| 2009 | ||
|---|---|---|
| 10 | Hatice Gulcin Ozer, Doruk Bozdag, Terry Camerlengo, Jiejun Wu, Yi-Wen Huang, Timothy D. R. Hartley, Jeffrey D. Parvin, Tim Hui-Ming Huang, Ümit V. Çatalyürek, Kun Huang: A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments. BICoB 2009: 320-330 | |
| 9 | Cenny Taslim, Jiejun Wu, Pearlly Yan, Greg Singer, Jeffrey D. Parvin, Tim Hui-Ming Huang, Shili Lin, Kun Huang: Comparative study on ChIP-seq data: normalization and binding pattern characterization. Bioinformatics 25(18): 2334-2340 (2009) | |
| 2008 | ||
| 8 | Wei Dai, Jens M. Teodoridis, Janet Graham, Constanze Zeller, Tim Hui-Ming Huang, Pearlly Yan, J. Keith Vass, Robert Brown, Jim Paul: Methylation Linear Discriminant Analysis (MLDA) for identifying differentially methylated CpG islands. BMC Bioinformatics 9: (2008) | |
| 7 | Dustin P. Potter, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin: Probe signal correction for differential methylation hybridization experiments. BMC Bioinformatics 9: (2008) | |
| 6 | Meng Li, Hyun-il Henry Paik, Curtis Balch, Yoosung Kim, Lang Li, Tim Hui-Ming Huang, Kenneth P. Nephew, Sun Kim: Enriched transcription factor binding sites in hypermethylated gene promoters in drug resistant cancer cells. Bioinformatics 24(16): 1745-1748 (2008) | |
| 2007 | ||
| 5 | Zailong Wang, Pearlly Yan, Dustin P. Potter, Charis Eng, Tim Hui-Ming Huang, Shili Lin: Heritable clustering and pathway discovery in breast cancer integrating epigenetic and phenotypic data. BMC Bioinformatics 8: (2007) | |
| 2006 | ||
| 4 | Lang Li, Alfred S. L. Cheng, Victor X. Jin, Henry H. Paik, Meiyun Fan, Xiaoman Li, Wei Zhang, Jason Robarge, Curtis Balch, Ramana V. Davuluri, Sun Kim, Tim Hui-Ming Huang, Kenneth P. Nephew: A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha. Bioinformatics 22(18): 2210-2216 (2006) | |
| 3 | Hao Sun, Saranyan K. Palaniswamy, Twyla T. Pohar, Victor X. Jin, Tim Hui-Ming Huang, Ramana V. Davuluri: MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data. Nucleic Acids Research 34(Database-Issue): 98-103 (2006) | |
| 2005 | ||
| 2 | Lang Li, Huidong Shi, Constantin Yiannoutsos, Tim Hui-Ming Huang, Kenneth P. Nephew: Epigenetic Hypothesis Tests for Methylation and Acetylation in a Triple Microarray System. Journal of Computational Biology 12(3): 370-390 (2005) | |
| 1995 | ||
| 1 | James M. Keller, Paul D. Gader, Ozy Sjahputera, Charles William Caldwell, Tim Hui-Ming Huang: A Fuzzy Logic Rule-Based System for Chromosome Recognition. CBMS 1995: 125-132 | |