Timothy R. Hughes

	2009
10		Trevis M. Alleyne, Lourdes Peña Castillo, Gwenael Badis, Shaheynoor Talukder, Michael F. Berger, Andrew R. Gehrke, Anthony A. Philippakis, Martha L. Bulyk, Quaid Morris, Timothy R. Hughes: Predicting the binding preference of transcription factors to individual DNA k-mers. Bioinformatics 25(8): 1012-1018 (2009)
	2008
9		Gerald Quon, Yee Whye Teh, Esther Chan, Timothy R. Hughes, Michael Brudno, Quaid Morris: A mixture model for the evolution of gene expression in non-homogeneous datasets. NIPS 2008: 1297-1304
	2007
8		Xiaoyu Chen, Timothy R. Hughes, Quaid Morris: RankMotif++: a motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors. ISMB/ECCB (Supplement of Bioinformatics) 2007: 72-79
7		Tomas Babak, Benjamin J. Blencowe, Timothy R. Hughes: Considerations in the identification of functional RNA structural elements in genomic alignments. BMC Bioinformatics 8: (2007)
	2006
6		Brendan J. Frey, Quaid Morris, Timothy R. Hughes: GenRate: A Generative Model that Reveals Novel Transcripts in Genome-Tiling Microarray Data. Journal of Computational Biology 13(2): 200-214 (2006)
	2005
5		Jim C. Huang, Quaid Morris, Timothy R. Hughes, Brendan J. Frey: GenXHC: a probabilistic generative model for cross-hybridization compensation in high-density genome-wide microarray data. ISMB (Supplement of Bioinformatics) 2005: 222-231
4		Brendan J. Frey, Quaid Morris, Wen Zhang, Naveed Mohammad, Timothy R. Hughes: GenRate: A Generative Model That Finds and Scores New Genes and Exons in Genomic Microarray Data. Pacific Symposium on Biocomputing 2005
3		Brendan J. Frey, Quaid Morris, Mark D. Robinson, Timothy R. Hughes: Finding Novel Transcripts in High-Resolution Genome-Wide Microarray Data Using the GenRate Model. RECOMB 2005: 66-82
	2004
2		Kimberly N. Lewis, Mark D. Robinson, Timothy R. Hughes, Christopher W. V. Hogue: MyMed: A database system for biomedical research on MEDLINE data. IBM Systems Journal 43(4): 756- (2004)
	2002
1		Mark D. Robinson, Jörg Grigull, Naveed Mohammad, Timothy R. Hughes: FunSpec: a web-based cluster interpreter for yeast. BMC Bioinformatics 3: 35 (2002)

Coauthor Index

1	Trevis M. Alleyne	[10]
2	Tomas Babak	[7]
3	Gwenael Badis	[10]
4	Michael F. Berger	[10]
5	Benjamin J. Blencowe	[7]
6	Michael Brudno	[9]
7	Martha L. Bulyk	[10]
8	Lourdes Peña Castillo	[10]
9	Esther Chan	[9]
10	Xiaoyu Chen	[8]
11	Brendan J. Frey	[3] [4] [5] [6]
12	Andrew R. Gehrke	[10]
13	Jörg Grigull	[1]
14	Christopher W. V. Hogue	[2]
15	Jim C. Huang	[5]
16	Kimberly N. Lewis	[2]
17	Naveed Mohammad	[1] [4]
18	Quaid Morris	[3] [4] [5] [6] [8] [9] [10]
19	Anthony A. Philippakis	[10]
20	Gerald Quon	[9]
21	Mark D. Robinson	[1] [2] [3]
22	Shaheynoor Talukder	[10]
23	Yee Whye Teh	[9]
24	Wen Zhang	[4]