Trey Ideker

	2009
22		David M. Rocke, Trey Ideker, Olga G. Troyanskaya, John Quackenbush, Joaquín Dopazo: Papers on normalization, variable selection, classification or clustering of microarray data. Bioinformatics 25(6): 701-702 (2009)
	2008
21		Ryan M. Kelley, Hoda Feizi, Trey Ideker: Correcting for gene-specific dye bias in DNA microarrays using the method of maximum likelihood. Bioinformatics 24(1): 71-77 (2008)
20		Maxim Kalaev, Mike Smoot, Trey Ideker, Roded Sharan: NetworkBLAST: comparative analysis of protein networks. Bioinformatics 24(4): 594-596 (2008)
	2007
19		Trey Ideker, Vineet Bafna: Systems Biology and Computational Proteomics, Joint RECOMB 2006 Satellite Workshops on Systems Biology and on Computational Proteomics, San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers Springer 2007
18		Oved Ourfali, Tomer Shlomi, Trey Ideker, Eytan Ruppin, Roded Sharan: SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments. ISMB/ECCB (Supplement of Bioinformatics) 2007: 359-366
17		H. Craig Mak, Mike Daly, Bianca Gruebel, Trey Ideker: CellCircuits: a database of protein network models. Nucleic Acids Research 35(Database-Issue): 538-545 (2007)
	2006
16		Eleazar Eskin, Trey Ideker, Benjamin J. Raphael, Christopher T. Workman: Systems Biology and Regulatory Genomics, Joint Annual RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics, San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers Springer 2006
15		Sourav Bandyopadhyay, Ryan M. Kelley, Trey Ideker: Discovering Regulated Networks During HIV-1 Latency and Reactivation. Pacific Symposium on Biocomputing 2006: 354-366
14		Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker: A direct comparison of protein interaction confidence assignment schemes. BMC Bioinformatics 7: 360 (2006)
13		Trey Ideker, Alfonso Valencia: Bioinformatics in the human interactome project. Bioinformatics 22(24): 2973-2974 (2006)
12		Jacob Scott, Trey Ideker, Richard M. Karp, Roded Sharan: Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks. Journal of Computational Biology 13(2): 133-144 (2006)
	2005
11		Jacob Scott, Trey Ideker, Richard M. Karp, Roded Sharan: Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks. RECOMB 2005: 1-13
10		Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker: Comparison of Protein-Protein Interaction Confidence Assignment Schemes. Systems Biology and Regulatory Genomics 2005: 39-50
9		Roded Sharan, Trey Ideker, Brian P. Kelley, Ron Shamir, Richard M. Karp: Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Journal of Computational Biology 12(6): 835-846 (2005)
8		Christopher T. Workman, Yutong Yin, David L. Corcoran, Trey Ideker, Gary D. Stormo, Panayiotis V. Benos: enoLOGOS: a versatile web tool for energy normalized sequence logos. Nucleic Acids Research 33(Web-Server-Issue): 389-392 (2005)
7		Albert Hsiao, Trey Ideker, Jerrold M. Olefsky, Shankar Subramaniam: VAMPIRE microarray suite: a web-based platform for the interpretation of gene expression data. Nucleic Acids Research 33(Web-Server-Issue): 627-632 (2005)
	2004
6		Trey Ideker, Erik K. Neumann, Vincent Schächter: Session Introduction. Pacific Symposium on Biocomputing 2004: 471-473
5		Roded Sharan, Trey Ideker, Brian P. Kelley, Ron Shamir, Richard M. Karp: Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data. RECOMB 2004: 282-289
4		Chen-Hsiang Yeang, Trey Ideker, Tommi Jaakkola: Physical Network Models. Journal of Computational Biology 11(2/3): 243-262 (2004)
3		Brian P. Kelley, Bingbing Yuan, Fran Lewitter, Roded Sharan, Brent R. Stockwell, Trey Ideker: PathBLAST: a tool for alignment of protein interaction networks. Nucleic Acids Research 32(Web-Server-Issue): 83-88 (2004)
	2002
2		Trey Ideker, Owen Ozier, Benno Schwikowski, Andrew F. Siegel: Discovering regulatory and signalling circuits in molecular interaction networks. ISMB 2002: 233-240
	2000
1		Trey Ideker, Vesteinn Thorsson, Andrew F. Siegel, Leroy E. Hood: Testing for Differentially-Expressed Genes by Maximum-Likelihood Analysis of Microarray Data. Journal of Computational Biology 7(6): 805-817 (2000)

Coauthor Index

1	Vineet Bafna	[19]
2	Sourav Bandyopadhyay	[15]
3	Panayiotis V. Benos	[8]
4	David L. Corcoran	[8]
5	Mike Daly	[17]
6	Joaquín Dopazo	[22]
7	Eleazar Eskin	[16]
8	Hoda Feizi	[21]
9	Bianca Gruebel	[17]
10	Leroy E. Hood	[1]
11	Albert Hsiao	[7]
12	Tommi Jaakkola	[4]
13	Maxim Kalaev	[20]
14	Richard M. Karp	[5] [9] [11] [12]
15	Brian P. Kelley	[3] [5] [9]
16	Ryan M. Kelley	[15] [21]
17	Fran Lewitter	[3]
18	H. Craig Mak	[17]
19	Erik K. Neumann	[6]
20	Jerrold M. Olefsky	[7]
21	Oved Ourfali	[18]
22	Owen Ozier	[2]
23	John Quackenbush	[22]
24	Benjamin J. Raphael	[16]
25	David M. Rocke	[22]
26	Eytan Ruppin	[10] [14] [18]
27	Vincent Schächter	[6]
28	Benno Schwikowski	[2]
29	Jacob Scott	[11] [12]
30	Ron Shamir	[5] [9]
31	Roded Sharan	[3] [5] [9] [10] [11] [12] [14] [18] [20]
32	Tomer Shlomi	[10] [14] [18]
33	Andrew F. Siegel	[1] [2]
34	Mike Smoot	[20]
35	Brent R. Stockwell	[3]
36	Gary D. Stormo	[8]
37	Shankar Subramaniam	[7]
38	Silpa Suthram	[10] [14]
39	Vesteinn Thorsson	[1]
40	Olga G. Troyanskaya	[22]
41	Alfonso Valencia	[13]
42	Christopher T. Workman	[8] [16]
43	Chen-Hsiang Yeang	[4]
44	Yutong Yin	[8]
45	Bingbing Yuan	[3]

Colors in the list of coauthors