Minoru Kanehisa

	2009
63		Yoshihiro Yamanishi, Masahiro Hattori, Masaaki Kotera, Susumu Goto, Minoru Kanehisa: E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs. Bioinformatics 25(12): (2009)
	2008
62		Minoru Kanehisa: KEGG for Medical and Pharmaceutical Applications. APBC 2008: 5
61		Kosuke Hashimoto, Ichigaku Takigawa, Motoki Shiga, Minoru Kanehisa, Hiroshi Mamitsuka: Mining significant tree patterns in carbohydrate sugar chains. ECCB 2008: 167-173
60		Yoshihiro Yamanishi, Michihiro Araki, Alex Gutteridge, Wataru Honda, Minoru Kanehisa: Prediction of drug-target interaction networks from the integration of chemical and genomic spaces. ISMB 2008: 232-240
59		C. Nelson Hayes, Diego Diez, Nicolas Joannin, Wataru Honda, Minoru Kanehisa, Mats Wahlgren, Craig E. Wheelock, Susumu Goto: varDB: a pathogen-specific sequence database of protein families involved in antigenic variation. Bioinformatics 24(21): 2564-2565 (2008)
58		Shuichi Kawashima, Piotr Pokarowski, Maria Pokarowska, Andrzej Kolinski, Toshiaki Katayama, Minoru Kanehisa: AAindex: amino acid index database, progress report 2008. Nucleic Acids Research 36(Database-Issue): 202-205 (2008)
57		Minoru Kanehisa, Michihiro Araki, Susumu Goto, Masahiro Hattori, Mika Hirakawa, Masumi Itoh, Toshiaki Katayama, Shuichi Kawashima, Shujiro Okuda, Toshiaki Tokimatsu, Yoshihiro Yamanishi: KEGG for linking genomes to life and the environment. Nucleic Acids Research 36(Database-Issue): 480-484 (2008)
56		Shujiro Okuda, Takuji Yamada, Masami Hamajima, Masumi Itoh, Toshiaki Katayama, Peer Bork, Susumu Goto, Minoru Kanehisa: KEGG Atlas mapping for global analysis of metabolic pathways. Nucleic Acids Research 36(Web-Server-Issue): 423-426 (2008)
55		Kosuke Hashimoto, Kiyoko F. Aoki-Kinoshita, Nobuhisa Ueda, Minoru Kanehisa, Hiroshi Mamitsuka: A new efficient probabilistic model for mining labeled ordered trees applied to glycobiology. TKDD 2(1): (2008)
	2007
54		Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh: Inference of Protein-Protein Interactions by Using Co-evolutionary Information. AB 2007: 322-333
53		Masashi Fujita, Hisaaki Mihara, Susumu Goto, Nobuyoshi Esaki, Minoru Kanehisa: Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach. BMC Bioinformatics 8: (2007)
52		Alex Gutteridge, Minoru Kanehisa, Susumu Goto: Regulation of metabolic networks by small molecule metabolites. BMC Bioinformatics 8: (2007)
51		Vachiranee Limviphuvadh, Seigo Tanaka, Susumu Goto, Kunihiro Ueda, Minoru Kanehisa: The commonality of protein interaction networks determined in neurodegenerative disorders (NDDs). Bioinformatics 23(16): 2129-2138 (2007)
50		Yuki Moriya, Masumi Itoh, Shujiro Okuda, Akiyasu C. Yoshizawa, Minoru Kanehisa: KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Research 35(Web-Server-Issue): 182-185 (2007)
49		Zhenjun Hu, David M. Ng, Takuji Yamada, Chunnuan Chen, Shuichi Kawashima, Joe Mellor, Bolan Linghu, Minoru Kanehisa, Joshua M. Stuart, Charles DeLisi: VisANT 3.0: new modules for pathway visualization, editing, prediction and construction. Nucleic Acids Research 35(Web-Server-Issue): 625-632 (2007)
	2006
48		Kiyoko F. Aoki-Kinoshita, Minoru Kanehisa, Ming-Yang Kao, Xiang-Yang Li, Weizhao Wang: A 6-Approximation Algorithm for Computing Smallest Common AoN-Supertree with Application to the Reconstruction of Glycan Trees. ISAAC 2006: 100-110
47		Kiyoko F. Aoki-Kinoshita, Nobuhisa Ueda, Hiroshi Mamitsuka, Minoru Kanehisa: ProfilePSTMM: capturing tree-structure motifs in carbohydrate sugar chains. ISMB (Supplement of Bioinformatics) 2006: 25-34
46		Jose C. Nacher, Jean-Marc Schwartz, Minoru Kanehisa, Tatsuya Akutsu: Identification of metabolic units induced by environmental signals. ISMB (Supplement of Bioinformatics) 2006: 375-383
45		Kosuke Hashimoto, Kiyoko F. Aoki-Kinoshita, Nobuhisa Ueda, Minoru Kanehisa, Hiroshi Mamitsuka: A new efficient probabilistic model for mining labeled ordered trees. KDD 2006: 177-186
44		Takuji Yamada, Minoru Kanehisa, Susumu Goto: Extraction of phylogenetic network modules from the metabolic network. BMC Bioinformatics 7: 130 (2006)
43		Jean-Marc Schwartz, Minoru Kanehisa: Quantitative elementary mode analysis of metabolic pathways: the example of yeast glycolysis. BMC Bioinformatics 7: 186 (2006)
42		Jian Huang, Alex Gutteridge, Wataru Honda, Minoru Kanehisa: MIMOX: a web tool for phage display based epitope mapping. BMC Bioinformatics 7: 451 (2006)
41		Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh: Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions. Bioinformatics 22(20): 2488-2492 (2006)
40		Minoru Kanehisa, Susumu Goto, Masahiro Hattori, Kiyoko F. Aoki-Kinoshita, Masumi Itoh, Shuichi Kawashima, Toshiaki Katayama, Michihiro Araki, Mika Hirakawa: From genomics to chemical genomics: new developments in KEGG. Nucleic Acids Research 34(Database-Issue): 354-357 (2006)
39		Shujiro Okuda, Toshiaki Katayama, Shuichi Kawashima, Susumu Goto, Minoru Kanehisa: ODB: a database of operons accumulating known operons across multiple genomes. Nucleic Acids Research 34(Database-Issue): 358-362 (2006)
38		Ali Masoudi-Nejad, Koichiro Tonomura, Shuichi Kawashima, Yuki Moriya, Masanori Suzuki, Masumi Itoh, Minoru Kanehisa, Takashi Endo, Susumu Goto: EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments. Nucleic Acids Research 34(Web-Server-Issue): 459-462 (2006)
	2005
37		Jean-Marc Schwartz, Minoru Kanehisa: A quadratic programming approach for decomposing steady-state metabolic flux distributions onto elementary modes. ECCB/JBI 2005: 205
36		Yoshihiro Yamanishi, Jean-Philippe Vert, Minoru Kanehisa: Supervised enzyme network inference from the integration of genomic data and chemical information. ISMB (Supplement of Bioinformatics) 2005: 468-477
35		Tetsuya Sato, Yoshihiro Yamanishi, Minoru Kanehisa, Hiroyuki Toh: The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships. Bioinformatics 21(17): 3482-3489 (2005)
34		Shin Kawano, Kosuke Hashimoto, Takashi Miyama, Susumu Goto, Minoru Kanehisa: Prediction of glycan structures from gene expression data based on glycosyltransferase reactions. Bioinformatics 21(21): 3976-3982 (2005)
33		Masumi Itoh, Susumu Goto, Tatsuya Akutsu, Minoru Kanehisa: Fast and accurate database homology search using upper bounds of local alignment scores. Bioinformatics 21(7): 912-921 (2005)
32		Kiyoko F. Aoki, Hiroshi Mamitsuka, Tatsuya Akutsu, Minoru Kanehisa: A score matrix to reveal the hidden links in glycans. Bioinformatics 21(8): 1457-1463 (2005)
31		Yoshinori Tamada, Hideo Bannai, Seiya Imoto, Toshiaki Katayama, Minoru Kanehisa, Satoru Miyano: Utilizing Evolutionary Information and Gene Expression Data for Estimating Gene Networks with Bayesian Network Models. J. Bioinformatics and Computational Biology 3(6): 1295-1314 (2005)
	2004
30		Yoshihiro Yamanishi, Jean-Philippe Vert, Minoru Kanehisa: Protein network inference from multiple genomic data: a supervised approach. ISMB/ECCB (Supplement of Bioinformatics) 2004: 363-370
29		Kiyoko F. Aoki, Nobuhisa Ueda, Atsuko Yamaguchi, Minoru Kanehisa, Tatsuya Akutsu, Hiroshi Mamitsuka: Application of a new probabilistic model for recognizing complex patterns in glycans. ISMB/ECCB (Supplement of Bioinformatics) 2004: 6-14
28		Jose C. Nacher, Nobuhisa Ueda, Takuji Yamada, Minoru Kanehisa, Tatsuya Akutsu: Clustering under the line graph transformation: application to reaction network. BMC Bioinformatics 5: 207 (2004)
27		Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Yasushi Okuno, Masahiro Hattori: The KEGG resource for deciphering the genome. Nucleic Acids Research 32(Database-Issue): 277-280 (2004)
26		Kiyoko F. Aoki, Atsuko Yamaguchi, Nobuhisa Ueda, Tatsuya Akutsu, Hiroshi Mamitsuka, Susumu Goto, Minoru Kanehisa: KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains. Nucleic Acids Research 32(Web-Server-Issue): 267-272 (2004)
25		Kiyoko F. Aoki, Nobuhisa Ueda, Atsuko Yamaguchi, Tatsuya Akutsu, Minoru Kanehisa, Hiroshi Mamitsuka: Managing and Analyzing Carbohydrate Data. SIGMOD Record 33(2): 33-38 (2004)
	2003
24		Jean-Philippe Vert, Minoru Kanehisa: Extracting active pathways from gene expression data. ECCB 2003: 238-244
23		Yoshihiro Yamanishi, Jean-Philippe Vert, A. Nakaya, Minoru Kanehisa: Extraction of correlated gene clusters from multiple genomic data by generalized kernel canonical correlation analysis. ISMB (Supplement of Bioinformatics) 2003: 323-330
22		Keun-Joon Park, Minoru Kanehisa: Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs. Bioinformatics 19(13): 1656-1663 (2003)
	2002
21		Jean-Philippe Vert, Minoru Kanehisa: Graph-Driven Feature Extraction From Microarray Data Using Diffusion Kernels and Kernel CCA. NIPS 2002: 1425-1432
20		Takeshi Kawashima, Shuichi Kawashima, Yuji Kohara, Minoru Kanehisa, Kazuhiro W. Makabe: Update of MAGEST: Maboya Gene Expression patterns and Sequence Tags. Nucleic Acids Research 30(1): 119-120 (2002)
19		Susumu Goto, Yasushi Okuno, Masahiro Hattori, Takaaki Nishioka, Minoru Kanehisa: LIGAND: database of chemical compounds and reactions in biological pathways. Nucleic Acids Research 30(1): 402-404 (2002)
18		Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Akihiro Nakaya: The KEGG databases at GenomeNet. Nucleic Acids Research 30(1): 42-46 (2002)
	2000
17		Minoru Kanehisa: Sequence comparison to graph comparison--a new generation of algorithms for network analysis of interacting molecules (abstract only). RECOMB 2000: 176
16		Takeshi Kawashima, Shuichi Kawashima, Minoru Kanehisa, Hiroki Nishida, Kazuhiro W. Makabe: MAGEST: MAboya Gene Expression patterns and Sequence Tags. Nucleic Acids Research 28(1): 133-135 (2000)
15		Minoru Kanehisa, Susumu Goto: KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Research 28(1): 27-30 (2000)
14		Shuichi Kawashima, Minoru Kanehisa: AAindex: Amino Acid index database. Nucleic Acids Research 28(1): 374 (2000)
13		Susumu Goto, Takaaki Nishioka, Minoru Kanehisa: LIGAND: chemical database of enzyme reactions. Nucleic Acids Research 28(1): 380-382 (2000)
	1999
12		Kentaro Tomii, Minoru Kanehisa: Systematic Detection of Protein Structural Motifs. Pattern Discovery in Biomolecular Data 1999: 97-110
11		Hiroyuki Ogata, Susumu Goto, Kazushige Sato, Wataru Fujibuchi, Hidemasa Bono, Minoru Kanehisa: KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Research 27(1): 29-34 (1999)
10		Shuichi Kawashima, Hiroyuki Ogata, Minoru Kanehisa: AAindex: Amino Acid Index Database. Nucleic Acids Research 27(1): 368-369 (1999)
9		Susumu Goto, Takaaki Nishioka, Minoru Kanehisa: LIGAND database for enzymes, compounds and reactions. Nucleic Acids Research 27(1): 377-379 (1999)
	1998
8		Susumu Goto, Takaaki Nishioka, Minoru Kanehisa: LIGAND: chemical database for enzyme reactions. Bioinformatics 14(7): 591-599 (1998)
	1994
7		Takahiko Suzuki, Toshihisa Takagi, Satoru Kuhara, Minoru Kanehisa: Development of an integrated Database for Genome Mapping and Nucleotide Sequences. HICSS (5) 1994: 68-76
	1993
6		Y. Matsuo, Minoru Kanehisa: An approach to systematic detection of protein structural motifs. Computer Applications in the Biosciences 9(2): 153-159 (1993)
5		Masato Ishikawa, Tomoyuki Toya, Masaki Hoshida, Katsumi Nitta, A. Ogiwara, Minoru Kanehisa: Multiple sequence alignment by parallel simulated annealing. Computer Applications in the Biosciences 9(3): 267-273 (1993)
	1985
4		Christian Burks, James W. Fickett, W. B. Goad, Minoru Kanehisa, F. I. Lewitter, W. P. Rindone, C. D. Swindell, C. S. Tung, H. S. Bilofsky: The GenBank nucleic acid sequence database. Computer Applications in the Biosciences 1(4): 225-233 (1985)
	1984
3		Minoru Kanehisa, James W. Fickett, W. B. Goad: A relational database system for the maintenance and verification of the Los Alamos sequence library. Nucleic Acids Research 12(1): 149-158 (1984)
2		Minoru Kanehisa: Use of statistical criteria for screening potential homologies in nucleic acid sequences. Nucleic Acids Research 12(1): 203-213 (1984)
1		Minoru Kanehisa, P. Klein, P. Greif, Charles DeLisi: Computer analysis and structure prediction of nucleic acids and proteins. Nucleic Acids Research 12(1): 417-428 (1984)

Coauthor Index

1	Tatsuya Akutsu	[25] [26] [28] [29] [32] [33] [46]
2	Kiyoko F. Aoki-Kinoshita (Kiyoko F. Aoki)	[25] [26] [29] [32] [40] [45] [47] [48] [55]
3	Michihiro Araki	[40] [57] [60]
4	Hideo Bannai	[31]
5	H. S. Bilofsky	[4]
6	Hidemasa Bono	[11]
7	Peer Bork	[56]
8	Christian Burks	[4]
9	Chunnuan Chen	[49]
10	Charles DeLisi	[1] [49]
11	Diego Diez	[59]
12	Takashi Endo	[38]
13	Nobuyoshi Esaki	[53]
14	James W. Fickett	[3] [4]
15	Wataru Fujibuchi	[11]
16	Masashi Fujita	[53]
17	W. B. Goad	[3] [4]
18	Susumu Goto	[8] [9] [11] [13] [15] [18] [19] [26] [27] [33] [34] [38] [39] [40] [44] [51] [52] [53] [56] [57] [59] [63]
19	P. Greif	[1]
20	Alex Gutteridge	[42] [52] [60]
21	Masami Hamajima	[56]
22	Kosuke Hashimoto	[34] [45] [55] [61]
23	Masahiro Hattori	[19] [27] [40] [57] [63]
24	C. Nelson Hayes	[59]
25	Mika Hirakawa	[40] [57]
26	Wataru Honda	[42] [59] [60]
27	Katsuhisa Horimoto	[41] [54]
28	Masaki Hoshida	[5]
29	Zhenjun Hu	[49]
30	Jian Huang	[42]
31	Seiya Imoto	[31]
32	Masato Ishikawa	[5]
33	Masumi Itoh	[33] [38] [40] [50] [56] [57]
34	Nicolas Joannin	[59]
35	Ming-Yang Kao	[48]
36	Toshiaki Katayama	[31] [39] [40] [56] [57] [58]
37	Shin Kawano	[34]
38	Shuichi Kawashima	[10] [14] [16] [18] [20] [27] [38] [39] [40] [49] [57] [58]
39	Takeshi Kawashima	[16] [20]
40	P. Klein	[1]
41	Yuji Kohara	[20]
42	Andrzej Kolinski	[58]
43	Masaaki Kotera	[63]
44	Satoru Kuhara	[7]
45	F. I. Lewitter	[4]
46	Xiang-Yang Li	[48]
47	Vachiranee Limviphuvadh	[51]
48	Bolan Linghu	[49]
49	Kazuhiro W. Makabe	[16] [20]
50	Hiroshi Mamitsuka	[25] [26] [29] [32] [45] [47] [55] [61]
51	Ali Masoudi-Nejad	[38]
52	Y. Matsuo	[6]
53	Joe Mellor	[49]
54	Hisaaki Mihara	[53]
55	Takashi Miyama	[34]
56	Satoru Miyano	[31]
57	Yuki Moriya	[38] [50]
58	Jose C. Nacher	[28] [46]
59	A. Nakaya	[23]
60	Akihiro Nakaya	[18]
61	David M. Ng	[49]
62	Hiroki Nishida	[16]
63	Takaaki Nishioka	[8] [9] [13] [19]
64	Katsumi Nitta	[5]
65	Hiroyuki Ogata	[10] [11]
66	A. Ogiwara	[5]
67	Shujiro Okuda	[39] [50] [56] [57]
68	Yasushi Okuno	[19] [27]
69	Keun-Joon Park	[22]
70	Maria Pokarowska	[58]
71	Piotr Pokarowski	[58]
72	W. P. Rindone	[4]
73	Kazushige Sato	[11]
74	Tetsuya Sato	[35] [41] [54]
75	Jean-Marc Schwartz	[37] [43] [46]
76	Motoki Shiga	[61]
77	Joshua M. Stuart	[49]
78	Masanori Suzuki	[38]
79	Takahiko Suzuki	[7]
80	C. D. Swindell	[4]
81	Toshihisa Takagi	[7]
82	Ichigaku Takigawa	[61]
83	Yoshinori Tamada	[31]
84	Seigo Tanaka	[51]
85	Hiroyuki Toh	[35] [41] [54]
86	Toshiaki Tokimatsu	[57]
87	Kentaro Tomii	[12]
88	Koichiro Tonomura	[38]
89	Tomoyuki Toya	[5]
90	C. S. Tung	[4]
91	Kunihiro Ueda	[51]
92	Nobuhisa Ueda	[25] [26] [28] [29] [45] [47] [55]
93	Jean-Philippe Vert	[21] [23] [24] [30] [36]
94	Mats Wahlgren	[59]
95	Weizhao Wang	[48]
96	Craig E. Wheelock	[59]
97	Takuji Yamada	[28] [44] [49] [56]
98	Atsuko Yamaguchi	[25] [26] [29]
99	Yoshihiro Yamanishi	[23] [30] [35] [36] [41] [54] [57] [60] [63]
100	Akiyasu C. Yoshizawa	[50]

Colors in the list of coauthors