Simon Kasif

	2009
55		Dikla Dotan-Cohen, Simon Kasif, Avraham A. Melkman: Seeing the forest for the trees: using the Gene Ontology to restructure hierarchical clustering. Bioinformatics 25(14): 1789-1795 (2009)
	2008
54		Xiaoyu Jiang, Naoki Nariai, Martin Steffen, Simon Kasif, Eric D. Kolaczyk: Integration of relational and hierarchical network information for protein function prediction. BMC Bioinformatics 9: (2008)
	2007
53		Dikla Dotan-Cohen, Avraham A. Melkman, Simon Kasif: Hierarchical tree snipping: clustering guided by prior knowledge. Bioinformatics 23(24): 3335-3342 (2007)
	2006
52		Noga Alon, Vera Asodi, Charles Cantor, Simon Kasif, John Rachlin: Multi-Node Graphs: A Framework for Multiplexed Biological Assays. Journal of Computational Biology 13(10): 1659-1672 (2006)
	2005
51		Satoru Miyano, Jill P. Mesirov, Simon Kasif, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman: Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings Springer 2005
50		Joseph D. Szustakowski, Simon Kasif, Zhiping Weng: Less is more: towards an optimal universal description of protein folds. ECCB/JBI 2005: 71
49		Yu Zheng, Brian P. Anton, Richard J. Roberts, Simon Kasif: Phylogenetic detection of conserved gene clusters in microbial genomes. BMC Bioinformatics 6: 243 (2005)
48		John Rachlin, Chunming Ding, Charles Cantor, Simon Kasif: MuPlex: multi-objective multiplex PCR assay design. Nucleic Acids Research 33(Web-Server-Issue): 544-547 (2005)
47		Chang-Jiun Wu, Simon Kasif: GEMS: a web server for biclustering analysis of expression data. Nucleic Acids Research 33(Web-Server-Issue): 596-599 (2005)
	2004
46		Nathan O. Stitziel, T. Andrew Binkowski, Yan Yuan Tseng, Simon Kasif, Jie Liang: topoSNP: a topographic database of non-synonymous single nucleotide polymorphisms with and without known disease association. Nucleic Acids Research 32(Database-Issue): 520-522 (2004)
45		Noga Alon, Richard Beigel, Simon Kasif, Steven Rudich, Benny Sudakov: Learning a Hidden Matching. SIAM J. Comput. 33(2): 487-501 (2004)
	2003
44		Stanley Letovsky, Simon Kasif: Predicting protein function from protein/protein interaction data: a probabilistic approach. ISMB (Supplement of Bioinformatics) 2003: 197-204
43		T. M. Murali, Simon Kasif: Extracting Conserved Gene Expression Motifs from Gene Expression Data. Pacific Symposium on Biocomputing 2003: 77-88
42		Jie Wu, Simon Kasif, Charles DeLisi: Identification of functional links between genes using phylogenetic profiles. Bioinformatics 19(12): 1524-1530 (2003)
41		Yang Su, T. M. Murali, Vladimir Pavlovic, Michael Schaffer, Simon Kasif: RankGene: identification of diagnostic genes based on expression data. Bioinformatics 19(12): 1578-1579 (2003)
	2002
40		Noga Alon, Richard Beigel, Simon Kasif, Steven Rudich, Benny Sudakov: Learning a Hidden Matching. FOCS 2002: 197-
39		Vladimir Pavlovic, Ashutosh Garg, Simon Kasif: A Bayesian framework for combining gene predictions. Bioinformatics 18(1): 19-27 (2002)
	2001
38		Richard Beigel, Noga Alon, Simon Kasif, Mehmet Serkan Apaydin, Lance Fortnow: An optimal procedure for gap closing in whole genome shotgun sequencing. RECOMB 2001: 22-30
	2000
37		Deyou Cai, Arthur L. Delcher, Ben Kao, Simon Kasif: Modeling splice sites with Bayes networks. Bioinformatics 16(2): 152-158 (2000)
	1998
36		Simon Kasif, Steven Salzberg, David L. Waltz, John Rachlin, David W. Aha: A Probabilistic Framework for Memory-Based Reasoning. Artif. Intell. 104(1-2): 287-311 (1998)
	1997
35		Simon Kasif: Towards a Constraint-Based Engineering Framework for Algorithm Design and Application. Constraints 2(1): 75-82 (1997)
	1996
34		Truxton Fulton, Simon Kasif, Steven Salzberg, David L. Waltz: Local Induction of Decision Trees: Towards Interactive Data Mining. KDD 1996: 14-19
33		Simon Kasif: Towards a Constraint-Based Engineering Framework for Algorithm Design and Application. ACM Comput. Surv. 28(4es): 66 (1996)
32		Arthur L. Delcher, Adam J. Grove, Simon Kasif, Judea Pearl: Logarithmic-Time Updates and Queries in Probabilistic Networks CoRR cs.AI/9602102: (1996)
31		Arthur L. Delcher, Adam J. Grove, Simon Kasif, Judea Pearl: Logarithmic-Time Updates and Queries in Probabilistic Networks. J. Artif. Intell. Res. (JAIR) 4: 37-59 (1996)
30		David G. Heath, Simon Kasif, S. Rao Kosaraju, Steven Salzberg, Gregory F. Sullivan: Learning nested concept classes with limited storage. J. Exp. Theor. Artif. Intell. 8(2): 129-147 (1996)
	1995
29		Truxton Fulton, Simon Kasif, Steven Salzberg: Efficient Algorithms for Finding Multi-way Splits for Decision Trees. ICML 1995: 244-251
28		Arthur L. Delcher, Adam J. Grove, Simon Kasif, Judea Pearl: Logarithmic-Time Updates and Queries in Probabilistic Networks. UAI 1995: 116-124
27		David L. Waltz, Simon Kasif: On Reasoning From Data. ACM Comput. Surv. 27(3): 356-359 (1995)
26		Arthur L. Delcher, Simon Kasif: Term Matching on a Mesh-Connected Array of Processors. Ann. Math. Artif. Intell. 14(2-4): 177-186 (1995)
25		Steven Salzberg, Arthur L. Delcher, David G. Heath, Simon Kasif: Best-Case Results for Nearest-Neighbor Learning. IEEE Trans. Pattern Anal. Mach. Intell. 17(6): 599-608 (1995)
	1994
24		Jonathan Bright, Simon Kasif, Lewis Stiller: Exploiting Algebraic Structure in Parallel State Space Search. AAAI 1994: 1341-1346
23		John Rachlin, Simon Kasif, Steven Salzberg, David W. Aha: Towards a Better Understanding of Memory-based Reasoning Systems. ICML 1994: 242-250
22		Simon Kasif, Arthur L. Delcher: Local Consistency in Parallel Constraint Satisfaction Networks. Artif. Intell. 69(1-2): 307-327 (1994)
21		Sreerama K. Murthy, Simon Kasif, Steven Salzberg: A System for Induction of Oblique Decision Trees. J. Artif. Intell. Res. (JAIR) 2: 1-32 (1994)
	1993
20		Arthur L. Delcher, Simon Kasif, Harry R. Goldberg, William H. Hsu: Probabilistic Prediction of Protein Secondary Structure Using Causal Networks (Extended Abstract). AAAI 1993: 316-321
19		Sreerama K. Murthy, Simon Kasif, Steven Salzberg, Richard Beigel: OC1: A Randomized Induction of Oblique Decision Trees. AAAI 1993: 322-327
18		David G. Heath, Simon Kasif, Steven Salzberg: Induction of Oblique Decision Trees. IJCAI 1993: 1002-1007
17		Arthur L. Delcher, Simon Kasif, Harry R. Goldberg, William H. Hsu: Protein Secondary-Structure Modeling with Probabilistic Networks. ISMB 1993: 109-117
16		Simon Kasif, Arthur L. Delcher: Local Consistency in Parallel Constraint-Satisfaction Networks. PPCP 1993: 139-145
15		Simon Kasif, Saibal Banerjee, Arthur L. Delcher, Gregory F. Sullivan: Some Results on the Computational Complexity of Symmetric Connectionist Networks. Ann. Math. Artif. Intell. 9(3-4): 327-344 (1993)
14		David G. Heath, Simon Kasif: The Complexity of Finding Minimal Voronoi Covers with Applications to Machine Learning. Comput. Geom. 3: 289-305 (1993)
	1992
13		Arthur L. Delcher, Simon Kasif: Improved Decision-Making in Game Trees: Recovering from Pathology. AAAI 1992: 513-518
12		Arthur L. Delcher, Simon Kasif: Efficient Parallel Term Matching and Anti-Unification. J. Autom. Reasoning 9(3): 391-406 (1992)
	1991
11		Steven Salzberg, Arthur L. Delcher, David G. Heath, Simon Kasif: Learning with a Helpful Teacher. IJCAI 1991: 705-711
10		David G. Heath, Simon Kasif, S. Rao Kosaraju, Steven Salzberg, Gregory F. Sullivan: Learning Nested Concept Classes with Limited Storage. IJCAI 1991: 777-782
	1990
9		Arthur L. Delcher, Simon Kasif: Efficient Parallel Term Matching and Anti-Unification. ICLP 1990: 355-369
8		Simon Kasif: On the Parallel Complexity of Discrete Relaxation in Constraint Satisfaction Networks. Artif. Intell. 45(3): 275-286 (1990)
	1989
7		Simon Kasif: Parallel Solutions to Constraint Satisfaction Problems. KR 1989: 180-188
6		Arthur L. Delcher, Simon Kasif: Some Results on the Complexity of Exploiting Data Dependency in Parallel Logic Programs. J. Log. Program. 6(3): 229-241 (1989)
	1986
5		Simon Kasif: On the Parallel Complexity of Some Constraint Satisfaction Problems. AAAI 1986: 349-353
	1985
4		Simon Kasif, Jack Minker: The Intelligent Channel: A Scheme for Result Sharing in Logic Programs. IJCAI 1985: 29-31
	1983
3		Simon Kasif, Madhur Kohli, Jack Minker: PRISM: A Parallel Inference System for Problem Solving. IJCAI 1983: 544-546
	1982
2		Norbert Eisinger, Simon Kasif, Jack Minker: Logic Programming: A Parallel Approach. ICLP 1982: 71-77
1		Upen S. Chakravarthy, Simon Kasif, Madhur Kohli, Jack Minker, D. Cao: Logic Programming on ZMOB: A Highly Parallel Machine. ICPP 1982: 347-349

Coauthor Index

1	David W. Aha	[23] [36]
2	Noga Alon	[38] [40] [45] [52]
3	Brian P. Anton	[49]
4	Mehmet Serkan Apaydin	[38]
5	Vera Asodi	[52]
6	Saibal Banerjee	[15]
7	Richard Beigel	[19] [38] [40] [45]
8	T. Andrew Binkowski	[46]
9	Jonathan Bright	[24]
10	Deyou Cai	[37]
11	Charles Cantor	[48] [52]
12	D. Cao	[1]
13	Upen S. Chakravarthy	[1]
14	Charles DeLisi	[42]
15	Arthur L. Delcher	[6] [9] [11] [12] [13] [15] [16] [17] [20] [22] [25] [26] [28] [31] [32] [37]
16	Chunming Ding	[48]
17	Dikla Dotan-Cohen	[53] [55]
18	Norbert Eisinger	[2]
19	Lance Fortnow	[38]
20	Truxton Fulton	[29] [34]
21	Ashutosh Garg	[39]
22	Harry R. Goldberg	[17] [20]
23	Adam J. Grove	[28] [31] [32]
24	David G. Heath	[10] [11] [14] [18] [25] [30]
25	William H. Hsu	[17] [20]
26	Sorin Istrail	[51]
27	Xiaoyu Jiang	[54]
28	Ben Kao (Benjamin C. M. Kao)	[37]
29	Madhur Kohli	[1] [3]
30	Eric D. Kolaczyk	[54]
31	S. Rao Kosaraju	[10] [30]
32	Stanley Letovsky (Stanley Ian Letovsky)	[44]
33	Jie Liang	[46]
34	Avraham A. Melkman	[53] [55]
35	Jill P. Mesirov	[51]
36	Jack Minker	[1] [2] [3] [4]
37	Satoru Miyano	[51]
38	T. M. Murali	[41] [43]
39	Sreerama K. Murthy	[19] [21]
40	Naoki Nariai	[54]
41	Vladimir Pavlovic	[39] [41]
42	Judea Pearl	[28] [31] [32]
43	Pavel A. Pevzner	[51]
44	John Rachlin	[23] [36] [48] [52]
45	Richard J. Roberts	[49]
46	Steven Rudich	[40] [45]
47	Steven Salzberg (Steven L. Salzberg)	[10] [11] [18] [19] [21] [23] [25] [29] [30] [34] [36]
48	Michael Schaffer	[41]
49	Martin Steffen	[54]
50	Lewis Stiller	[24]
51	Nathan O. Stitziel	[46]
52	Yang Su	[41]
53	Benny Sudakov	[40] [45]
54	Gregory F. Sullivan	[10] [15] [30]
55	Joseph D. Szustakowski	[50]
56	Yan Yuan Tseng	[46]
57	David L. Waltz	[27] [34] [36]
58	Michael S. Waterman	[51]
59	Zhiping Weng	[50]
60	Chang-Jiun Wu	[47]
61	Jie Wu	[42]
62	Yu Zheng	[49]

Colors in the list of coauthors