Sun Kim

	2009
44		Jakramate Bootkrajang, Sun Kim, Byoung-Tak Zhang: Evolutionary hypernetwork classifiers for protein-proteininteraction sentence filtering. GECCO 2009: 185-192
43		Youngik Yang, Sun Kim: Experience report: issues in comparing gene function annotation in text. SIGDOC 2009: 227-232
42		Fuxiao Xin, Meng Li, Curtis Balch, Michael Thomson, Meiyun Fan, Yunlong Liu, Scott M. Hammond, Sun Kim, Kenneth P. Nephew: Computational analysis of microRNA profiles and their target genes suggests significant involvement in breast cancer antiestrogen resistance. Bioinformatics 25(4): 430-434 (2009)
41		Seungyoon Nam, Meng Li, Kwangmin Choi, Curtis Balch, Sun Kim, Kenneth P. Nephew: MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression. Nucleic Acids Research 37(Web-Server-Issue): 356-362 (2009)
	2008
40		Sun Kim, Meng Li, Hyun-il Henry Paik, Kenneth P. Nephew, Huidong Shi, Robin Kramer, Dong Xu, T.-H. Huang: Predicting DNA Methylation Susceptibility Using CpG Flanking Sequences. Pacific Symposium on Biocomputing 2008: 315-326
39		Meng Hu, Kwangmin Choi, Wei Su, Sun Kim, Jiong Yang: A gene pattern mining algorithm using interchangeable gene sets for prokaryotes. BMC Bioinformatics 9: (2008)
38		Kwangmin Choi, Sun Kim: ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts. BMC Bioinformatics 9: (2008)
37		Meng Li, Hyun-il Henry Paik, Curtis Balch, Yoosung Kim, Lang Li, Tim Hui-Ming Huang, Kenneth P. Nephew, Sun Kim: Enriched transcription factor binding sites in hypermethylated gene promoters in drug resistant cancer cells. Bioinformatics 24(16): 1745-1748 (2008)
36		Jeong-Hyeon Choi, Sun Kim, Haixu Tang, Justen Andrews, Don G. Gilbert, John Colbourne: A machine-learning approach to combined evidence validation of genome assemblies. Bioinformatics 24(6): 744-750 (2008)
35		Sun Kim, Soo-Yong Shin, In-Hee Lee, Soo-Jin Kim, Ram Sriram, Byoung-Tak Zhang: PIE: an online prediction system for protein-protein interactions from text. Nucleic Acids Research 36(Web-Server-Issue): 411-415 (2008)
	2007
34		Chan-Hoon Park, Soo-Jin Kim, Sun Kim, Dong-Yeon Cho, Byoung-Tak Zhang: Finding Cancer-Related Gene Combinations Using a Molecular Evolutionary Algorithm. BIBE 2007: 158-163
33		Sun Kim, Ankita Bhan, Bharath K. Maryada, Kwangmin Choi, Yves V. Brun: EGGS: Extraction of Gene Clusters Using Genome Context Based Sequence Matching Techniques. BIBM 2007: 23-28
32		Sun Kim, Soo-Jin Kim, Byoung-Tak Zhang: Evolving hypernetwork classifiers for microRNA expression profile analysis. IEEE Congress on Evolutionary Computation 2007: 313-319
31		Haixu Tang, Sun Kim: Bioinformatics: Mining the Massive Data from High Throughput Genomics Experiments. Analysis of Biological Data: A Soft Computing Approach 2007: 3-24
30		Seung-Hee Bae, Haixu Tang, Jing Wu, Jun Xie, Sun Kim: dPattern: transcription factor binding site (TFBS) discovery in human genome using a discriminative pattern analysis. Bioinformatics 23(19): 2619-2621 (2007)
	2006
29		Mehmet M. Dalkilic, Sun Kim, Jiong Yang: Data Mining and Bioinformatics, First International Workshop, VDMB 2006, Seoul, Korea, September 11, 2006, Revised Selected Papers Springer 2006
28		Sun Kim, Byoung-Tak Zhang: Human Papillomavirus Risk Type Classification from Protein Sequences Using Support Vector Machines. EvoWorkshops 2006: 57-66
27		Kwangmin Choi, Amit Saple, Sun Kim: Genome Data Type: a Vehicle to Deliver a Genome Comparison System on the Web. ICDM Workshops 2006: 142-146
26		Sun Kim, Jae-Hong Eom: Prediction of the Human Papillomavirus Risk Types Using Gap-Spectrum Kernels. ISNN (2) 2006: 710-715
25		Jae-Hong Eom, Sun Kim, Seong-Hwan Kim, Byoung-Tak Zhang: A Tree Kernel-Based Method for Protein-Protein Interaction Mining from Biomedical Literature. KDLL 2006: 42-52
24		Rupali Patwardhan, Haixu Tang, Sun Kim, Mehmet M. Dalkilic: An Approximate de Bruijn Graph Approach to Multiple Local Alignment and Motif Discovery in Protein Sequences. VDMB 2006: 158-169
23		Lang Li, Alfred S. L. Cheng, Victor X. Jin, Henry H. Paik, Meiyun Fan, Xiaoman Li, Wei Zhang, Jason Robarge, Curtis Balch, Ramana V. Davuluri, Sun Kim, Tim Hui-Ming Huang, Kenneth P. Nephew: A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha. Bioinformatics 22(18): 2210-2216 (2006)
22		Bin Song, Jeong-Hyeon Choi, Guangyu Chen, Jacek Szymanski, Guo-Qiang Zhang, Anthony K. H. Tung, Jaewoo Kang, Sun Kim, Jiong Yang: ARCS: an aggregated related column scoring scheme for aligned sequences. Bioinformatics 22(19): 2326-2332 (2006)
21		Do-Hoon Lee, Jeong-Hyeon Choi, Mehmet M. Dalkilic, Sun Kim: COMPAM : visualization of combining pairwise alignments for multiple genomes. Bioinformatics 22(2): 242-244 (2006)
20		Takuma Tsukahara, Sun Kim, Milton W. Taylor: REFINEMENT: A search framework for the identification of interferon-responsive elements in DNA sequences - a case study with ISRE and GAS. Computational Biology and Chemistry 30(2): 134-147 (2006)
19		Sun Kim, Jason Lee: BAG: a graph theoretic sequence clustering algorithm. IJDMB 1(2): 178-200 (2006)
	2005
18		Sun Kim, Jeong-Hyeon Choi, Jiong Yang: Gene Teams with Relaxed Proximity Constraint. CSB 2005: 44-55
17		Kwangmin Choi, Jeong-Hyeon Choi, Amit Saple, Zhiping Wang, Jason Lee, Sun Kim: PLATCOM: a Platform for Computational Comparative Genomics on the Web. CSB Workshops 2005: 27-30
16		Jason Lee, Sun Kim: Cluster Utility: A New Metric for Clustering Biological Sequences. CSB Workshops 2005: 45-46
15		Kwangmin Choi, Jeong-Hyeon Choi, Amit Saple, Zhiping Wang, Jason Lee, Sun Kim: PLATCOM: Current Status and Plan for the Next Stages. DILS 2005: 300-304
14		Sun Kim, Kyung-shik Shin, Kyungdo Park: An Application of Support Vector Machines for Customer Churn Analysis: Credit Card Case. ICNC (2) 2005: 636-647
13		Kwangmin Choi, Yu Ma, Jeong-Hyeon Choi, Sun Kim: PLATCOM: a Platform for Computational Comparative Genomics. Bioinformatics 21(10): 2514-2516 (2005)
12		Jeong-Hyeon Choi, Hwan-Gue Cho, Sun Kim: GAME: A simple and efficient whole genome alignment method using maximal exact match filtering. Computational Biology and Chemistry 29(3): 244-253 (2005)
	2004
11		Jeong-Hyeon Choi, Kwangmin Choi, Hwan-Gue Cho, Sun Kim: Multiple Genome Alignment by Clustering Pairwise Matches. Comparative Genomics 2004: 30-41
10		In-Hee Lee, Sun Kim, Byoung-Tak Zhang: Multi-objective Evolutionary Probe Design Based on Thermodynamic Criteria for HPV Detection. PRICAI 2004: 742-750
9		Zhiping Wang, Mehmet M. Dalkilic, Sun Kim: Guiding motif discovery by iterative pattern refinement. SAC 2004: 162-166
	2003
8		Irfan Gunduz, Sihui Zhao, Mehmet M. Dalkilic, Sun Kim: Motif Discovery from Large Number of Sequences: A Case Study with Disease Resistance Genes in Arabidopsos thaliana. METMBS 2003: 29-34
7		Sun Kim: Graph Theoretic Sequence Clustering Algorithms and Their Applications to Genome Comparison. Computational Biology and Genome Informatics 2003: 81-116
6		Sun Kim, Byoung-Tak Zhang: Genetic Mining of HTML Structures for Effective Web-Document Retrieval. Appl. Intell. 18(3): 243-256 (2003)
	2001
5		Sun Kim, Li Liao, Jean-Francois Tomb: A probabilistic approach to sequence assembly validation. BIOKDD 2001: 38-43
	2000
4		Sun Kim, Byoung-Tak Zhang: Web-Document Retrieval by Genetic Learning of Importance Factors for HTML Tags. PRICAI Workshop on Text and Web Mining 2000: 13-23
	1999
3		Dong-Ho Shin, Yu-Hwan Kim, Sun Kim, Jae-Hong Eom, Hyung-Joo Shin, Byoung-Tak Zhang: SCAI TREC-8 Experiments. TREC 1999
2		Sun Kim: A New String-Pattern Matching Algorithm Using Partitioning and Hashing Efficiently. ACM Journal of Experimental Algorithmics 4: 2 (1999)
	1994
1		Sun Kim, Hantao Zhang: ModGen: Theorem Proving by Model Generation. AAAI 1994: 162-167

Coauthor Index

1	Justen Andrews	[36]
2	Seung-Hee Bae	[30]
3	Curtis Balch	[23] [37] [41] [42]
4	Ankita Bhan	[33]
5	Jakramate Bootkrajang	[44]
6	Yves V. Brun	[33]
7	Guangyu Chen	[22]
8	Alfred S. L. Cheng	[23]
9	Dong-Yeon Cho	[34]
10	Hwan-Gue Cho	[11] [12]
11	Jeong-Hyeon Choi	[11] [12] [13] [15] [17] [18] [21] [22] [36]
12	Kwangmin Choi	[11] [13] [15] [17] [27] [33] [38] [39] [41]
13	John Colbourne	[36]
14	Mehmet M. Dalkilic	[8] [9] [21] [24] [29]
15	Ramana V. Davuluri	[23]
16	Jae-Hong Eom	[3] [25] [26]
17	Meiyun Fan	[23] [42]
18	Don G. Gilbert	[36]
19	Irfan Gunduz	[8]
20	Scott M. Hammond	[42]
21	Meng Hu	[39]
22	T.-H. Huang	[40]
23	Tim Hui-Ming Huang	[23] [37]
24	Victor X. Jin	[23]
25	Jaewoo Kang	[22]
26	Seong-Hwan Kim	[25]
27	Soo-Jin Kim	[32] [34] [35]
28	Yoosung Kim	[37]
29	Yu-Hwan Kim	[3]
30	Robin Kramer	[40]
31	Do-Hoon Lee	[21]
32	In-Hee Lee	[10] [35]
33	Jason Lee	[15] [16] [17] [19]
34	Lang Li	[23] [37]
35	Meng Li	[37] [40] [41] [42]
36	Xiaoman Li	[23]
37	Li Liao	[5]
38	Yunlong Liu	[42]
39	Yu Ma	[13]
40	Bharath K. Maryada	[33]
41	Seungyoon Nam	[41]
42	Kenneth P. Nephew	[23] [37] [40] [41] [42]
43	Henry H. Paik	[23]
44	Hyun-il Henry Paik	[37] [40]
45	Chan-Hoon Park	[34]
46	Kyungdo Park	[14]
47	Rupali Patwardhan	[24]
48	Jason Robarge	[23]
49	Amit Saple	[15] [17] [27]
50	Huidong Shi	[40]
51	Dong-Ho Shin	[3]
52	Hyung-Joo Shin	[3]
53	Kyung-shik Shin	[14]
54	Soo-Yong Shin	[35]
55	Bin Song	[22]
56	Ram Sriram	[35]
57	Wei Su	[39]
58	Jacek Szymanski	[22]
59	Haixu Tang	[24] [30] [31] [36]
60	Milton W. Taylor	[20]
61	Michael Thomson	[42]
62	Jean-Francois Tomb	[5]
63	Takuma Tsukahara	[20]
64	Anthony K. H. Tung	[22]
65	Zhiping Wang	[9] [15] [17]
66	Jing Wu	[30]
67	Jun Xie	[30]
68	Fuxiao Xin	[42]
69	Dong Xu	[40]
70	Jiong Yang	[18] [22] [29] [39]
71	Youngik Yang	[43]
72	Byoung-Tak Zhang	[3] [4] [6] [10] [25] [28] [32] [34] [35] [44]
73	Guo-Qiang Zhang	[22]
74	Hantao Zhang	[1]
75	Wei Zhang	[23]
76	Sihui Zhao	[8]

Colors in the list of coauthors