| 2009 | ||
|---|---|---|
| 34 | Ernst Althaus, Gunnar W. Klau, Oliver Kohlbacher, Hans-Peter Lenhof, Knut Reinert: Integer Linear Programming in Computational Biology. Efficient Algorithms 2009: 199-218 | |
| 33 | Gunnar W. Klau: A new graph-based method for pairwise global network alignment. BMC Bioinformatics 10(S-1): (2009) | |
| 32 | Sebastian Böcker, Sebastian Briesemeister, Gunnar W. Klau: On optimal comparability editing with applications to molecular diagnostics. BMC Bioinformatics 10(S-1): (2009) | |
| 2008 | ||
| 31 | Marcus T. Dittrich, Gunnar W. Klau, Andreas Rosenwald, Thomas Dandekar, Tobias Müller: Identifying functional modules in protein-protein interaction networks: an integrated exact approach. ISMB 2008: 223-231 | |
| 30 | Sebastian Böcker, Sebastian Briesemeister, Gunnar W. Klau: Exact Algorithms for Cluster Editing: Evaluation and Experiments. WEA 2008: 289-302 | |
| 29 | Christoph Buchheim, Markus Chimani, Dietmar Ebner, Carsten Gutwenger, Michael Jünger, Gunnar W. Klau, Petra Mutzel, René Weiskircher: A branch-and-cut approach to the crossing number problem. Discrete Optimization 5(2): 373-388 (2008) | |
| 2007 | ||
| 28 | Knut Reinert, Markus Bauer, Andreas Döring, Gunnar W. Klau, Aaron L. Halpern: A General Paradigm for Fast, Adaptive Clustering of Biological Sequences. German Conference on Bioinformatics 2007: 15-29 | |
| 27 | Markus Bauer, Gunnar W. Klau, Knut Reinert: Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization. BMC Bioinformatics 8: (2007) | |
| 26 | Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert: Integer linear programming approaches for non-unique probe selection. Discrete Applied Mathematics 155(6-7): 840-856 (2007) | |
| 2006 | ||
| 25 | Patrick May, Gunnar W. Klau, Markus Bauer, Thomas Steinke: Accelerated microRNA-Precursor Detection Using the Smith-Waterman Algorithm on FPGAs. GCCB 2006: 19-32 | |
| 24 | Christian A. Duncan, Gunnar W. Klau, Stephen G. Kobourov, Georg Sander: Graph-Drawing Contest Report. Graph Drawing 2006: 448-452 | |
| 23 | Sven Rahmann, Gunnar W. Klau: Integer Linear Programs for Discovering Approximate Gene Clusters. WABI 2006: 298-309 | |
| 22 | Ivana Ljubic, René Weiskircher, Ulrich Pferschy, Gunnar W. Klau, Petra Mutzel, Matteo Fischetti: An Algorithmic Framework for the Exact Solution of the Prize-Collecting Steiner Tree Problem. Math. Program. 105(2-3): 427-449 (2006) | |
| 2005 | ||
| 21 | Ivana Ljubic, René Weiskircher, Ulrich Pferschy, Gunnar W. Klau, Petra Mutzel, Matteo Fischetti: Solving the Prize-Collecting Steiner Tree Problem to Optimality. ALENEX/ANALCO 2005: 68-76 | |
| 20 | Markus Bauer, Gunnar W. Klau, Knut Reinert: Fast and Accurate Structural RNA Alignment by Progressive Lagrangian Optimization. CompLife 2005: 217-228 | |
| 19 | Christoph Buchheim, Dietmar Ebner, Michael Jünger, Gunnar W. Klau, Petra Mutzel, René Weiskircher: Exact Crossing Minimization. Graph Drawing 2005: 37-48 | |
| 18 | Markus Chimani, Gunnar W. Klau, René Weiskircher: Non-planar Orthogonal Drawings with Fixed Topology. SOFSEM 2005: 96-105 | |
| 17 | Markus Bauer, Gunnar W. Klau, Knut Reinert: Multiple Structural RNA Alignment with Lagrangian Relaxation. WABI 2005: 303-314 | |
| 2004 | ||
| 16 | Gunnar W. Klau, Ivana Ljubic, Andreas Moser, Petra Mutzel, Philipp Neuner, Ulrich Pferschy, Günther R. Raidl, René Weiskircher: Combining a Memetic Algorithm with Integer Programming to Solve the Prize-Collecting Steiner Tree Problem. GECCO (1) 2004: 1304-1315 | |
| 15 | Dietmar Ebner, Gunnar W. Klau, René Weiskircher: Label Number Maximization in the Slider Model. Graph Drawing 2004: 144-154 | |
| 14 | Markus Bauer, Gunnar W. Klau: Structural Alignment of Two RNA Sequences with Lagrangian Relaxation. ISAAC 2004: 113-123 | |
| 13 | Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert: Optimal robust non-unique probe selection using Integer Linear Programming. ISMB/ECCB (Supplement of Bioinformatics) 2004: 186-193 | |
| 12 | Gunnar W. Klau, René Weiskircher: Robustness and Resilience. Network Analysis 2004: 417-437 | |
| 2003 | ||
| 11 | Gunnar W. Klau, Ivana Ljubic, Petra Mutzel, Ulrich Pferschy, René Weiskircher: The Fractional Prize-Collecting Steiner Tree Problem on Trees: Extended Abstract. ESA 2003: 691-702 | |
| 2002 | ||
| 10 | Gunnar W. Klau, Neal Lesh, Joe Marks, Michael Mitzenmacher: Human-Guided Tabu Search. AAAI/IAAI 2002: 41-47 | |
| 9 | Stacey D. Scott, Neal Lesh, Gunnar W. Klau: Investigating human-computer optimization. CHI 2002: 155-162 | |
| 2001 | ||
| 8 | Carsten Gutwenger, Michael Jünger, Gunnar W. Klau, Sebastian Leipert, Petra Mutzel, René Weiskircher: AGD: A Library of Algorithms for Graph Drawing. Graph Drawing 2001: 473-474 | |
| 7 | Carsten Gutwenger, Michael Jünger, Gunnar W. Klau, Sebastian Leipert, Petra Mutzel: Graph Drawing Algorithm Engineering with AGD. Software Visualization 2001: 307-323 | |
| 2000 | ||
| 6 | Gunnar W. Klau, Petra Mutzel: Optimal Labelling of Point Features in the Slider Model. COCOON 2000: 340-350 | |
| 5 | Gunnar W. Klau, Karsten Klein, Petra Mutzel: An Experimental Comparison of Orthogonal Compaction Algorithms (Extended Abstract). Graph Drawing 2000: 37-51 | |
| 1999 | ||
| 4 | Markus Eiglsperger, Sándor P. Fekete, Gunnar W. Klau: Orthogonal Graph Drawing. Drawing Graphs 1999: 121-171 | |
| 3 | Gunnar W. Klau, Petra Mutzel: Combining Graph Labeling and Compaction. Graph Drawing 1999: 27-37 | |
| 2 | Gunnar W. Klau, Petra Mutzel: Optimal Compaction of Orthogonal Grid Drawings. IPCO 1999: 304-319 | |
| 1998 | ||
| 1 | Petra Mutzel, Carsten Gutwenger, Ralf Brockenauer, Sergej Fialko, Gunnar W. Klau, Michael Krüger, Thomas Ziegler, Stefan Näher, David Alberts, Dirk Ambras, Gunter Koch, Michael Jünger, Christoph Buchheim, Sebastian Leipert: A Library of Algorithms for Graph Drawing. Graph Drawing 1998: 456-457 | |