Ina Koch

	2008
22		Eva Grafahrend-Belau, Falk Schreiber, Monika Heiner, Andrea Sackmann, Björn H. Junker, Stefanie Grunwald, Astrid Speer, Katja Winder, Ina Koch: Modularization of biochemical networks based on classification of Petri net t-invariants. BMC Bioinformatics 9: (2008)
21		Stefanie Grunwald, Astrid Speer, Jörg Ackermann, Ina Koch: Petri net modelling of gene regulation of the Duchenne muscular dystrophy. Biosystems 92(2): 189-205 (2008)
20		Ina Koch, Georg Fuellen: A review of bioinformatics education in Germany. Briefings in Bioinformatics 9(3): 232-242 (2008)
	2007
19		Andrea Sackmann, Dorota Formanowicz, Piotr Formanowicz, Ina Koch, Jacek Blazewicz: An analysis of the Petri net based model of the human body iron homeostasis process. Computational Biology and Chemistry 31(1): 1-10 (2007)
	2006
18		Andrea Sackmann, Monika Heiner, Ina Koch: Application of Petri net based analysis techniques to signal transduction pathways. BMC Bioinformatics 7: 482 (2006)
17		Maurice Scheer, Frank Klawonn, Richard Münch, Andreas Grote, Karsten Hiller, Claudia Choi, Ina Koch, Max Schobert, Elisabeth Härtig, Ulrich Klages, Dieter Jahn: JProGO: a novel tool for the functional interpretation of prokaryotic microarray data using Gene Ontology information. Nucleic Acids Research 34(Web-Server-Issue): 510-515 (2006)
	2005
16		Silke Trißl, Kristian Rother, Heiko Müller, Thomas Steinke, Ina Koch, Robert Preissner, Cornelius Frömmel, Ulf Leser: Columba: an integrated database of proteins, structures, and annotations. BMC Bioinformatics 6: 81 (2005)
15		Ina Koch, Björn H. Junker, Monika Heiner: Application of Petri net theory for modelling and validation of the sucrose breakdown pathway in the potato tuber. Bioinformatics 21(7): 1219-1226 (2005)
14		Louchka Popova-Zeugmann, Monika Heiner, Ina Koch: Time Petri Nets for Modelling and Analysis of Biochemical Networks. Fundam. Inform. 67(1-3): 149-162 (2005)
	2004
13		Kristian Rother, Heiko Müller, Silke Trißl, Ina Koch, Thomas Steinke, Robert Preissner, Cornelius Frömmel, Ulf Leser: Columba: Multidimensional Data Integration of Protein Annotations. DILS 2004: 156-171
12		Monika Heiner, Ina Koch: Petri Net Based Model Validation in Systems Biology. ICATPN 2004: 216-237
11		Patrick May, Stefan Barthel, Ina Koch: PTGL - a web-based database application for protein topologies. Bioinformatics 20(17): 3277-3279 (2004)
10		Ina Koch, Markus Schüler, Monika Heiner: STEPP - Search Tool for Exploration of Petri net Paths: A new tool for Petri net-based path analysis in biochemical networks. In Silico Biology 5: (2004)
	2003
9		Monika Heiner, Ina Koch, Jürgen Will: Model Validation of Biological Pathways Using Petri Nets - Demonstrated for Apoptosis. CMSB 2003: 173
8		Klaus Voss, Monika Heiner, Ina Koch: Steady state analysis of metabolic pathways using Petri nets. In Silico Biology 3: 31 (2003)
	2002
7		Stéphanie Boué, Martin Vingron, Evgenia V. Kriventseva, Ina Koch: Theoretical analysis of alternative splice forms using computational methods. ECCB 2002: 65-73
6		Stefan Schuster, Thomas Pfeiffer, Ferdinand Moldenhauer, Ina Koch, Thomas Dandekar: Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae. Bioinformatics 18(2): 351-361 (2002)
	2001
5		Ina Koch: Enumerating all connected maximal common subgraphs in two graphs. Theor. Comput. Sci. 250(1-2): 1-30 (2001)
	2000
4		Stefan Schuster, Thomas Pfeiffer, Ferdinand Moldenhauer, Ina Koch, Thomas Dandekar: Structural Analysis of Metabolic Networks: Elementary Flux Modes, Analogy to Petri Nets, and Application to Mycoplasma Pneumoniae. German Conference on Bioinformatics 2000: 115-120
	1999
3		Ina Koch, Stefan Schuster, Monika Heiner: Simulation and analysis of metabolic networks by time-dependent Petri nets. German Conference on Bioinformatics 1999: 208-209
	1997
2		Ina Koch, Thomas Lengauer: Detection of Distant Structural Similarities in a Set of Proteins Using a Fast Graph-Based Method. ISMB 1997: 167-178
	1996
1		Ina Koch, Thomas Lengauer, Egon Wanke: An Algorithm for Finding Maximal Common Subtopologies in a Set of Protein Structures. Journal of Computational Biology 3(2): 289-306 (1996)

Coauthor Index

1	Jörg Ackermann	[21]
2	Stefan Barthel	[11]
3	Jacek Blazewicz	[19]
4	Stéphanie Boué	[7]
5	Claudia Choi	[17]
6	Thomas Dandekar	[4] [6]
7	Dorota Formanowicz	[19]
8	Piotr Formanowicz	[19]
9	Cornelius Frömmel	[13] [16]
10	Georg Fuellen	[20]
11	Eva Grafahrend-Belau	[22]
12	Andreas Grote	[17]
13	Stefanie Grunwald	[21] [22]
14	Elisabeth Härtig	[17]
15	Monika Heiner	[3] [8] [9] [10] [12] [14] [15] [18] [22]
16	Karsten Hiller	[17]
17	Dieter Jahn	[17]
18	Björn H. Junker	[15] [22]
19	Ulrich Klages	[17]
20	Frank Klawonn	[17]
21	Evgenia V. Kriventseva	[7]
22	Thomas Lengauer	[1] [2]
23	Ulf Leser	[13] [16]
24	Patrick May	[11]
25	Ferdinand Moldenhauer	[4] [6]
26	Heiko Müller	[13] [16]
27	Richard Münch	[17]
28	Thomas Pfeiffer	[4] [6]
29	Louchka Popova-Zeugmann	[14]
30	Robert Preissner	[13] [16]
31	Kristian Rother	[13] [16]
32	Andrea Sackmann	[18] [19] [22]
33	Maurice Scheer	[17]
34	Max Schobert	[17]
35	Falk Schreiber	[22]
36	Markus Schüler	[10]
37	Stefan Schuster	[3] [4] [6]
38	Astrid Speer	[21] [22]
39	Thomas Steinke	[13] [16]
40	Silke Trißl	[13] [16]
41	Martin Vingron	[7]
42	Klaus Voss	[8]
43	Egon Wanke	[1]
44	Jürgen Will	[9]
45	Katja Winder	[22]

Colors in the list of coauthors