 | 2012 |
| 13 |  | Mario Latendresse,
Markus Krummenacker,
Miles Trupp,
Peter D. Karp:
Construction and completion of flux balance models from pathway databases.
Bioinformatics 28(3): 388-396 (2012) |
| 12 |  | Ron Caspi,
Tomer Altman,
Kate Dreher,
Carol A. Fulcher,
Pallavi Subhraveti,
Ingrid M. Keseler,
Anamika Kothari,
Markus Krummenacker,
Mario Latendresse,
Lukas A. Mueller,
Quang Ong,
Suzanne M. Paley,
Anuradha Pujar,
Alexander Glennon Shearer,
Michael Travers,
Deepika Weerasinghe,
Peifen Zhang,
Peter D. Karp:
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Nucleic Acids Research 40(Database-Issue): 742-753 (2012) |
| 2011 |
| 11 |  | Ingrid M. Keseler,
Julio Collado-Vides,
Alberto Santos-Zavaleta,
Martín Peralta-Gil,
Socorro Gama-Castro,
Luis Muñiz-Rascado,
César Bonavides-Martínez,
Suzanne M. Paley,
Markus Krummenacker,
Tomer Altman,
Pallavi Kaipa,
Aaron Spaulding,
John Pacheco,
Mario Latendresse,
Carol A. Fulcher,
Malabika Sarker,
Alexander Glennon Shearer,
Amanda Mackie,
Ian T. Paulsen,
Robert P. Gunsalus,
Peter D. Karp:
EcoCyc: a comprehensive database of Escherichia coli biology.
Nucleic Acids Research 39(Database-Issue): 583-590 (2011) |
| 2010 |
| 10 |  | Peter D. Karp,
Suzanne M. Paley,
Markus Krummenacker,
Mario Latendresse,
Joseph M. Dale,
Thomas J. Lee,
Pallavi Kaipa,
Fred Gilham,
Aaron Spaulding,
Liviu Popescu,
Tomer Altman,
Ian T. Paulsen,
Ingrid M. Keseler,
Ron Caspi:
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology.
Briefings in Bioinformatics 11(1): 40-79 (2010) |
| 9 |  | Ron Caspi,
Tomer Altman,
Joseph M. Dale,
Kate Dreher,
Carol A. Fulcher,
Fred Gilham,
Pallavi Kaipa,
Athikkattuvalasu S. Karthikeyan,
Anamika Kothari,
Markus Krummenacker,
Mario Latendresse,
Lukas A. Mueller,
Suzanne M. Paley,
Liviu Popescu,
Anuradha Pujar,
Alexander Glennon Shearer,
Peifen Zhang,
Peter D. Karp:
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Nucleic Acids Research 38(Database-Issue): 473-479 (2010) |
| 2009 |
| 8 |  | Ingrid M. Keseler,
César Bonavides-Martínez,
Julio Collado-Vides,
Socorro Gama-Castro,
Robert P. Gunsalus,
D. Aaron Johnson,
Markus Krummenacker,
Laura M. Nolan,
Suzanne M. Paley,
Ian T. Paulsen,
Martín Peralta-Gil,
Alberto D. Santos-Zavaleta,
Alexander Glennon Shearer,
Peter D. Karp:
EcoCyc: A comprehensive view of Escherichia coli biology.
Nucleic Acids Research 37(Database-Issue): 464-470 (2009) |
| 2008 |
| 7 |  | Ron Caspi,
Hartmut Foerster,
Carol A. Fulcher,
Pallavi Kaipa,
Markus Krummenacker,
Mario Latendresse,
Suzanne M. Paley,
Seung Yon Rhee,
Alexander Glennon Shearer,
Christophe Tissier,
Thomas C. Walk,
Peifen Zhang,
Peter D. Karp:
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.
Nucleic Acids Research 36(Database-Issue): 623-631 (2008) |
| 2006 |
| 6 |  | Ron Caspi,
Hartmut Foerster,
Carol A. Fulcher,
Rebecca Hopkinson,
John Ingraham,
Pallavi Kaipa,
Markus Krummenacker,
Suzanne M. Paley,
John Pick,
Seung Yon Rhee,
Christophe Tissier,
Peifen Zhang,
Peter D. Karp:
MetaCyc: a multiorganism database of metabolic pathways and enzymes.
Nucleic Acids Research 34(Database-Issue): 511-516 (2006) |
| 2005 |
| 5 |  | Markus Krummenacker,
Suzanne M. Paley,
Lukas A. Mueller,
Thomas Yan,
Peter D. Karp:
Querying and computing with BioCyc databases.
Bioinformatics 21(16): 3454-3455 (2005) |
| 1999 |
| 4 |  | Peter D. Karp,
Monica Riley,
Suzanne M. Paley,
Alida Pellegrini-Toole,
Markus Krummenacker:
Eco Cyc: encyclopedia of Escherichia coli genes and metabolism.
Nucleic Acids Research 27(1): 55-58 (1999) |
| 1998 |
| 3 |  | Peter D. Karp,
Monica Riley,
Suzanne M. Paley,
Alida Pellegrini-Toole,
Markus Krummenacker:
EcoCyc: Encyclopedia of Escherichia coli genes and metabolism.
Nucleic Acids Research 26(1): 50-53 (1998) |
| 1997 |
| 2 |  | Marie desJardins,
Peter D. Karp,
Markus Krummenacker,
Thomas J. Lee,
Christos A. Ouzounis:
Prediction of Enzyme Classification from Protein Sequence without the Use of Sequence Similarity.
ISMB 1997: 92-99 |
| 1 |  | Peter D. Karp,
Monica Riley,
Suzanne M. Paley,
Alida Pellegrini-Toole,
Markus Krummenacker:
EcoCyc: Enyclopedia of Escherichia coli Genes and Metabolism.
Nucleic Acids Research 25(1): 43-51 (1997) |