 | 2009 |
|---|
| 58 |       | Gregory Kucherov,
Esko Ukkonen:
Combinatorial Pattern Matching, 20th Annual Symposium, CPM 2009, Lille, France, June 22-24, 2009, Proceedings
Springer 2009 |
| 57 | | Elena Yavorska Harris,
Thierry Lecroq,
Gregory Kucherov,
Stefano Lonardi:
CPM's 20th Anniversary: A Statistical Retrospective.
CPM 2009: 1-11 |
| 56 | | Marta Gîrdea,
Laurent Noé,
Gregory Kucherov:
Back-Translation for Discovering Distant Protein Homologies.
WABI 2009: 108-120 |
| 55 | | Roman Kolpakov,
Gregory Kucherov,
Pascal Ochem:
On maximal repetitions of arbitrary exponent
CoRR abs/0906.4750: (2009) |
| 54 | | Mikhail A. Roytberg,
Anna Gambin,
Laurent Noé,
Slawomir Lasota,
Eugenia Furletova,
Ewa Szczurek,
Gregory Kucherov:
On Subset Seeds for Protein Alignment.
IEEE/ACM Trans. Comput. Biology Bioinform. 6(3): 483-494 (2009) |
| 2008 |
|---|
| 53 | | Mikhail A. Roytberg,
Anna Gambin,
Laurent Noé,
Slawomir Lasota,
Eugenia Furletova,
Ewa Szczurek,
Gregory Kucherov:
Efficient Seeding Techniques for Protein Similarity Search.
BIRD 2008: 466-478 |
| 52 | | Roman Kolpakov,
Gregory Kucherov:
Searching for Gapped Palindromes.
CPM 2008: 18-30 |
| 51 | | Gregory Kucherov,
Dina Sokol:
Approximate Tandem Repeats.
Encyclopedia of Algorithms 2008 |
| 50 | | Pierre Peterlongo,
Laurent Noé,
Dominique Lavenier,
Van Hoa Nguyen,
Gregory Kucherov,
Mathieu Giraud:
Optimal neighborhood indexing for protein similarity search.
BMC Bioinformatics 9: (2008) |
| 49 | | Fabrice Touzain,
Sophie Schbath,
Isabelle Debled-Rennesson,
Bertrand Aigle,
Gregory Kucherov,
Pierre Leblond:
SIGffRid: A tool to search for sigma factor binding sites in bacterial genomes using comparative approach and biologically driven statistics.
BMC Bioinformatics 9: (2008) |
| 48 | | Ségolène Caboche,
Maude Pupin,
Valérie Leclère,
Arnaud Fontaine,
Philippe Jacques,
Gregory Kucherov:
NORINE: a database of nonribosomal peptides.
Nucleic Acids Research 36(Database-Issue): 326-331 (2008) |
| 2007 |
|---|
| 47 | | Gregory Kucherov,
Laurent Noé,
Mikhail A. Roytberg:
Subset Seed Automaton.
CIAA 2007: 180-191 |
| 46 | | Pierre Peterlongo,
Laurent Noé,
Dominique Lavenier,
Gilles Georges,
Julien Jacques,
Gregory Kucherov,
Mathieu Giraud:
Protein Similarity Search with Subset Seeds on a Dedicated Reconfigurable Hardware.
PPAM 2007: 1240-1248 |
| 2006 |
|---|
| 45 | | Johanne Cohen,
Fedor V. Fomin,
Pinar Heggernes,
Dieter Kratsch,
Gregory Kucherov:
Optimal Linear Arrangement of Interval Graphs.
MFCS 2006: 267-279 |
| 44 | | Gregory Kucherov,
Laurent Noé,
Mikhail A. Roytberg:
A unifying framework for seed sensitivity and its application to subset seeds
CoRR abs/cs/0601116: (2006) |
| 43 | | Gregory Kucherov,
Laurent Noé,
Mikhail A. Roytberg:
A unifying framework for seed sensitivity and its application to subset seeds (Extended abstract)
CoRR abs/cs/0603105: (2006) |
| 42 | | Gregory Kucherov,
Laurent Noé,
Yann Ponty:
Estimating seed sensitivity on homogeneous alignments
CoRR abs/cs/0603106: (2006) |
| 41 | | Gregory Kucherov,
Laurent Noé,
Mikhail A. Roytberg:
A Unifying Framework for Seed Sensitivity and its Application to Subset Seeds.
J. Bioinformatics and Computational Biology 4(2): 553-570 (2006) |
| 40 | | Gregory Kucherov,
Andrey A. Mironov,
Mikhail A. Roytberg:
An Overview of the Algorithmic Session of MCCMB'05.
J. Bioinformatics and Computational Biology 4(2): (2006) |
| 2005 |
|---|
| 39 | | Gregory Kucherov,
Laurent Noé,
Mikhail A. Roytberg:
A Unifying Framework for Seed Sensitivity and Its Application to Subset Seeds.
WABI 2005: 251-263 |
| 38 | | Mathilde Bouvel,
Vladimir Grebinski,
Gregory Kucherov:
Combinatorial Search on Graphs Motivated by Bioinformatics Applications: A Brief Survey.
WG 2005: 16-27 |
| 37 | | Gregory Kucherov,
Laurent Noé,
Mikhail A. Roytberg:
Multiseed Lossless Filtration.
IEEE/ACM Trans. Comput. Biology Bioinform. 2(1): 51-61 (2005) |
| 36 | | Laurent Noé,
Gregory Kucherov:
YASS: enhancing the sensitivity of DNA similarity search.
Nucleic Acids Research 33(Web-Server-Issue): 540-543 (2005) |
| 2004 |
|---|
| 35 | | Gregory Kucherov,
Laurent Noé,
Yann Ponty:
Estimating Seed Sensitivity on Homogeneous Alignments.
BIBE 2004: 387-394 |
| 34 | | Gregory Kucherov,
Laurent Noé,
Mikhail A. Roytberg:
Multi-seed Lossless Filtration (Extended Abstract).
CPM 2004: 297-310 |
| 33 | | Laurent Noé,
Gregory Kucherov:
Improved hit criteria for DNA local alignment.
BMC Bioinformatics 5: 149 (2004) |
| 32 | | Jean-Pierre Duval,
Roman Kolpakov,
Gregory Kucherov,
Thierry Lecroq,
Arnaud Lefebvre:
Linear-time computation of local periods.
Theor. Comput. Sci. 326(1-3): 229-240 (2004) |
| 2003 |
|---|
| 31 | | Jean-Pierre Duval,
Roman Kolpakov,
Gregory Kucherov,
Thierry Lecroq,
Arnaud Lefebvre:
Linear-Time Computation of Local Periods.
MFCS 2003: 388-397 |
| 30 | | Gregory Kucherov,
Pascal Ochem,
Michaël Rao:
How Many Square Occurrences Must a Binary Sequence Contain?
Electr. J. Comb. 10: (2003) |
| 29 |  | Roman M. Kolpakov,
Ghizlane Bana,
Gregory Kucherov:
mreps: efficient and flexible detection of tandem repeats in DNA.
Nucleic Acids Research 31(13): 3672-3678 (2003) |
| 28 | | Roman M. Kolpakov,
Gregory Kucherov:
Finding approximate repetitions under Hamming distance.
Theor. Comput. Sci. 1(303): 135-156 (2003) |
| 2001 |
|---|
| 27 | | Roman M. Kolpakov,
Gregory Kucherov:
Finding Approximate Repetitions under Hamming Distance.
ESA 2001: 170-181 |
| 2000 |
|---|
| 26 | | Roman M. Kolpakov,
Gregory Kucherov:
Finding Repeats with Fixed Gap.
SPIRE 2000: 162-168 |
| 25 | | Vladimir Grebinski,
Gregory Kucherov:
Optimal Reconstruction of Graphs under the Additive Model.
Algorithmica 28(1): 104-124 (2000) |
| 1999 |
|---|
| 24 | | Gregory Kucherov,
Michaël Rusinowitch:
Patterns in Words versus Patterns in Trees: A Brief Survey and New Results.
Ershov Memorial Conference 1999: 283-296 |
| 23 | | Roman M. Kolpakov,
Gregory Kucherov:
On Maximal Repetitions in Words.
FCT 1999: 374-385 |
| 22 | | Roman M. Kolpakov,
Gregory Kucherov:
Finding Maximal Repetitions in a Word in Linear Time.
FOCS 1999: 596-604 |
| 21 | | Vladimir Grebinski,
Gregory Kucherov:
Reconstructing Set Partitions.
SODA 1999: 915-916 |
| 20 | | David A. Plaisted,
Gregory Kucherov:
The Complexity of Some Complementation Problems.
Inf. Process. Lett. 71(3-4): 159-165 (1999) |
| 19 | | Roman M. Kolpakov,
Gregory Kucherov,
Yuriy Tarannikov:
On Repetition-Free Binary Words of Minimal Density.
Theor. Comput. Sci. 218(1): 161-175 (1999) |
| 1998 |
|---|
| 18 | | Roman M. Kolpakov,
Gregory Kucherov,
Yuriy Tarannikov:
On Repetition-Free Binary Words of Minimal Density.
MFCS 1998: 683-692 |
| 17 | | Vladimir Grebinski,
Gregory Kucherov:
Reconstructing a Hamiltonian Cycle by Querying the Graph: Application to DNA Physical Mapping.
Discrete Applied Mathematics 88(1-3): 147-165 (1998) |
| 1997 |
|---|
| 16 | | Vladimir Grebinski,
Gregory Kucherov:
Optimal Reconstruction of Graphs Under the Additive Model.
ESA 1997: 246-258 |
| 15 | | Vladimir Grebinski,
Gregory Kucherov:
Optimal Query Bounds for Reconstructing a Hamiltonian Cycle in Complete Graphs.
ISTCS 1997: 166-173 |
| 14 | | Roman M. Kolpakov,
Gregory Kucherov:
Minimal Letter Frequency in n-th Power-Free Binary Words.
MFCS 1997: 347-357 |
| 13 | | François Bertault,
Gregory Kucherov:
Visualization of Dynamic Automata Using Padnon.
Workshop on Implementing Automata 1997: 25-28 |
| 12 | | Gregory Kucherov,
Michaël Rusinowitch:
Matching a Set of Strings with Variable Length don't Cares.
Theor. Comput. Sci. 178(1-2): 129-154 (1997) |
| 1996 |
|---|
| 11 | | Gregory Kucherov,
Pierre Lescanne,
Peter D. Mosses:
Valentin M. Antimirov (1961-1995).
Theor. Comput. Sci. 155(2): 289-290 (1996) |
| 1995 |
|---|
| 10 | | Gregory Kucherov,
Michaël Rusinowitch:
Matching a Set of Strings with Variable Length Don't Cares.
CPM 1995: 230-247 |
| 9 | | Gregory Kucherov,
Mohamed Tajine:
Decidability of Regularity and Related Properties of Ground Normal Form Languages
Inf. Comput. 118(1): 91-100 (1995) |
| 8 | | Gregory Kucherov,
Michaël Rusinowitch:
Undecidability of Ground Reducibility for Word Rewriting Systems with Variables.
Inf. Process. Lett. 53(4): 209-215 (1995) |
| 1994 |
|---|
| 7 | | Dieter Hofbauer,
Maria Huber,
Gregory Kucherov:
Some Results on Top-Context-Free Tree Languages.
CAAP 1994: 157-171 |
| 6 | | Gregory Kucherov,
Michaël Rusinowitch:
The Complexitiy of Testing Ground Reducibility for Linear Word Rewriting Systems with Variables.
CTRS 1994: 262-275 |
| 5 | | Gregory Kucherov,
Michaël Rusinowitch:
On ground reducibility problem for word rewriting systems with variables.
SAC 1994: 271-276 |
| 1992 |
|---|
| 4 | | Gregory Kucherov,
Mohamed Tajine:
Decidability of Regularity and Related Properties of Ground Normal Form Languages.
CTRS 1992: 272-286 |
| 1991 |
|---|
| 3 | | Gregory Kucherov:
On Relationship Between Term Rewriting Systems and Regular Tree Languages.
RTA 1991: 299-311 |
| 1990 |
|---|
| 2 | | Alexandre V. Zamulin,
V. A. Kositov,
Gregory Kucherov,
E. V. Pak:
The Database Programming Language Atlant: Principal Features and Implementation techniques.
East/West Database Workshop 1990: 385-402 |
| 1988 |
|---|
| 1 | | Gregory Kucherov:
A New Quasi-Reducibility Testing Algorithm and its Application to Proofs by Induction.
ALP 1988: 204-213 |
