 | 2009 |
| 12 |  | Rutger W. W. Brouwer,
Sacha A. F. T. van Hijum,
Oscar P. Kuipers:
MINOMICS: visualizing prokaryote transcriptomics and proteomics data in a genomic context.
Bioinformatics 25(1): 139-140 (2009) |
| 11 |  | Evert-Jan Blom,
Jos B. T. M. Roerdink,
Oscar P. Kuipers,
Sacha A. F. T. van Hijum:
MOTIFATOR: detection and characterization of regulatory motifs using prokaryote transcriptome data.
Bioinformatics 25(4): 550-551 (2009) |
| 2008 |
| 10 |  | Evert-Jan Blom,
Sacha A. F. T. van Hijum,
Klaas J. Hofstede,
Remko Silvis,
Jos B. T. M. Roerdink,
Oscar P. Kuipers:
DISCLOSE : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcription factor binding sites.
BMC Bioinformatics 9: (2008) |
| 9 |  | Sacha A. F. T. van Hijum,
Richard J. S. Baerends,
Aldert L. Zomer,
Harma A. Karsens,
Victoria Martin-Requena,
Oswaldo Trelles,
Jan Kok,
Oscar P. Kuipers:
Supervised Lowess normalization of comparative genome hybridization data - application to lactococcal strain comparisons.
BMC Bioinformatics 9: (2008) |
| 8 |  | Rutger W. W. Brouwer,
Oscar P. Kuipers,
Sacha A. F. T. van Hijum:
The relative value of operon predictions.
Briefings in Bioinformatics 9(5): 367-375 (2008) |
| 7 |  | Michel A. Westenberg,
Sacha A. F. T. van Hijum,
Oscar P. Kuipers,
J. B. T. M. Roerdink:
Visualizing Genome Expression and Regulatory Network Dynamics in Genomic and Metabolic Context.
Comput. Graph. Forum 27(3): 887-894 (2008) |
| 2007 |
| 6 |  | Evert-Jan Blom,
Dinne W. J. Bosman,
Sacha A. F. T. van Hijum,
Rainer Breitling,
Lars Tijsma,
Remko Silvis,
Jos B. T. M. Roerdink,
Oscar P. Kuipers:
FIVA: Functional Information Viewer and Analyzer extracting biological knowledge from transcriptome data of prokaryotes.
Bioinformatics 23(9): 1161-1163 (2007) |
| 2006 |
| 5 |  | Casper J. Albers,
Ritsert C. Jansen,
Jan Kok,
Oscar P. Kuipers,
Sacha A. F. T. van Hijum:
SIMAGE: simulation of DNA-microarray gene expression data.
BMC Bioinformatics 7: 205 (2006) |
| 4 |  | Anne de Jong,
Sacha A. F. T. van Hijum,
Jetta J. E. Bijlsma,
Jan Kok,
Oscar P. Kuipers:
BAGEL: a web-based bacteriocin genome mining tool.
Nucleic Acids Research 34(Web-Server-Issue): 273-279 (2006) |
| 2005 |
| 3 |  | Sacha A. F. T. van Hijum,
Aldert L. Zomer,
Oscar P. Kuipers,
Jan Kok:
Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies.
Nucleic Acids Research 33(Web-Server-Issue): 560-566 (2005) |
| 2004 |
| 2 |  | Morris A. Swertz,
E. O. de Brock,
Sacha A. F. T. van Hijum,
Anne de Jong,
Girbe Buist,
Richard J. S. Baerends,
Jan Kok,
Oscar P. Kuipers,
Ritsert C. Jansen:
Molecular Genetics Information System (MOLGENIS): alternatives in developing local experimental genomics databases.
Bioinformatics 20(13): 2075-2083 (2004) |
| 2003 |
| 1 |  | Sacha A. F. T. van Hijum,
Anne de Jong,
Girbe Buist,
Jan Kok,
Oscar P. Kuipers:
UniFrag and GenomePrimer: selection of primers for genome-wide production of unique amplicons.
Bioinformatics 19(12): 1580-1582 (2003) |