Yixue Li

Yi-Xue Li

	2012
58		Xin Zhao, Qi Liu, Qingqing Cai, Yanyun Li, Congjian Xu, Yixue Li, Zuofeng Li, Xiaoyan Zhang: Dr.VIS: a database of human disease-related viral integration sites. Nucleic Acids Research 40(Database-Issue): 1041-1046 (2012)
57		Ying He, Menghuan Zhang, Yuanhu Ju, Zhong-Hao Yu, Daqing Lv, Han Sun, Weilan Yuan, Fei He, Jianshe Zhang, Hong Li, Jing Li, Rui Wang-Sattler, Yixue Li, Guoqing Zhang, Lu Xie: dbDEPC 2.0: updated database of differentially expressed proteins in human cancers. Nucleic Acids Research 40(Database-Issue): 964-971 (2012)
	2011
56		KaiYan Feng, JunHui Gao, KaiRui Feng, Lei Liu, Yixue Li: Active and Passive Nearest Neighbor Algorithm: A Newly-Developed Supervised Classifier. ICIC (2) 2011: 189-196
55		Kailin Tang, Ruixin Zhu, Yixue Li, Zhi-Wei Cao: Discrimination of Approved Drugs from Experimental Drugs by Learning Methods. BMC Bioinformatics 12: 157 (2011)
54		Hui Yu, Bao-Hong Liu, Zhi-Qiang Ye, Chun Li, Yi-Xue Li, Yuan-Yuan Li: Link-based Quantitative Methods to Identify Differentially Coexpressed Genes and Gene Pairs. BMC Bioinformatics 12: 315 (2011)
53		Qianghu Wang, Jie Sun, Meng Zhou, Haixiu Yang, Yan Li, Xiang Li, Sali Lv, Xia Li, Yixue Li: A novel network-based method for measuring the functional relationship between gene sets. Bioinformatics 27(11): 1521-1528 (2011)
52		Tao Huang, Lei Liu, Qi Liu, Guohui Ding, Yejun Tan, Zhidong Tu, Yixue Li, Hongyue Dai, Lu Xie: The role of Hepatitis C Virus in the dynamic protein interaction networks of hepatocellular cirrhosis and carcinoma. I. J. Computational Biology and Drug Design 4(1): 5-18 (2011)
51		Yun Li, Kang Tu, Siyuan Zheng, Jingfang Wang, Yixue Li, Pei Hao, Xuan Li: Association of Feature Gene Expression with Structural Fingerprints of Chemical Compounds. J. Bioinformatics and Computational Biology 9(4): 503-519 (2011)
50		Hao Ye, Li Ye, Hong Kang, Duanfeng Zhang, Lin Tao, Kailin Tang, Xueping Liu, Ruixin Zhu, Qi Liu, Y. Z. Chen, Yixue Li, Zhi-Wei Cao: HIT: linking herbal active ingredients to targets. Nucleic Acids Research 39(Database-Issue): 1055-1059 (2011)
49		Zhimin Huang, Liang Zhu, Yan Cao, Geng Wu, Xinyi Liu, Yingyi Chen, Qi Wang, Ting Shi, Yaxue Zhao, Yuefei Wang, Weihua Li, Yixue Li, Haifeng Chen, Guoqiang Chen, Jian Zhang: ASD: a comprehensive database of allosteric proteins and modulators. Nucleic Acids Research 39(Database-Issue): 663-669 (2011)
	2010
48		Tao Huang, Guohui Ding, Yixue Li, Lei Liu, Eugene Tan, Hongyue Dai, Qi Liu, Zhidong Tu, Lu Xie: Dysfunctional gene/protein networks in hepatitis C virus-induced hepatocellular cirrhosis and carcinoma. BCB 2010: 502-507
47		Bao-Hong Liu, Hui Yu, Kang Tu, Chun Li, Yi-Xue Li, Yuan-Yuan Li: DCGL: an R package for identifying differentially coexpressed genes and links from gene expression microarray data. Bioinformatics 26(20): 2637-2638 (2010)
46		Hong Li, Ying He, Guohui Ding, Chuan Wang, Lu Xie, Yixue Li: dbDEPC: a database of Differentially Expressed Proteins in human Cancers. Nucleic Acids Research 38(Database-Issue): 658-664 (2010)
	2009
45		Zhen Wang, Guohui Ding, Zhong-Hao Yu, Lei Liu, Yixue Li: CHSMiner: a GUI tool to identify chromosomal homologous segments. Algorithms for Molecular Biology 4: (2009)
44		Yao Yu, Kang Tu, Siyuan Zheng, Yun Li, Guohui Ding, Jie Ping, Pei Hao, Yixue Li: GEOGLE: context mining tool for the correlation between gene expression and the phenotypic distinction. BMC Bioinformatics 10: 264 (2009)
43		Pei Hao, Siyuan Zheng, Jie Ping, Kang Tu, Christian Gieger, Rui Wang-Sattler, Yang Zhong, Yixue Li: Human gene expression sensitivity according to large scale meta-analysis. BMC Bioinformatics 10(S-1): (2009)
42		Hong Li, Guohui Ding, Lu Xie, Yixue Li: PAnnBuilder: an R package for assembling proteomic annotation data. Bioinformatics 25(8): 1094-1095 (2009)
41		Guohui Ding, Peter Lorenz, Michael Kreutzer, Yixue Li, Hans-Jürgen Thiesen: SysZNF: the C2H2 zinc finger gene database. Nucleic Acids Research 37(Database-Issue): 267-273 (2009)
40		Su-Jun Li, Mao Peng, Hong Li, Boshu Liu, Chuan Wang, Jia-Rui Wu, Yi-Xue Li, Rong Zeng: Sys-BodyFluid: a systematical database for human body fluid proteome research. Nucleic Acids Research 37(Database-Issue): 907-912 (2009)
39		Hong Xi, Jongsun Park, Guohui Ding, Yong-Hwan Lee, Yixue Li: SysPIMP: the web-based systematical platform for identifying human disease-related mutated sequences from mass spectrometry. Nucleic Acids Research 37(Database-Issue): 913-920 (2009)
	2008
38		Yong Fuga Li, Randy J. Arnold, Yixue Li, Predrag Radivojac, Quanhu Sheng, Haixu Tang: A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics. RECOMB 2008: 167-180
37		Qingwei Xu, Yixiang Shi, Qiang Lu, Guoqing Zhang, Qing-ming Luo, Yixue Li: GORouter: an RDF model for providing semantic query and inference services for Gene Ontology and its associations. BMC Bioinformatics 9(S-1): (2008)
36		Xiaojing Wang, Di Wu, Siyuan Zheng, Jing Sun, Lin Tao, Yixue Li, Zhi-Wei Cao: Ab-origin: an enhanced tool to identify the sourcing gene segments in germline for rearranged antibodies. BMC Bioinformatics 9(S-12): (2008)
35		Guangyong Zheng, Ziliang Qian, Qing Yang, Chaochun Wei, Lu Xie, Yangyong Zhu, Yixue Li: The combination approach of SVM and ECOC for powerful identification and classification of transcription factor. BMC Bioinformatics 9: (2008)
34		Pedro Alves, Randy J. Arnold, David E. Clemmer, Yixue Li, James P. Reilly, Quanhu Sheng, Haixu Tang, Zhiyin Xun, Rong Zeng, Predrag Radivojac: Fast and accurate identification of semi-tryptic peptides in shotgun proteomics. Bioinformatics 24(1): 102-109 (2008)
33		Siyuan Zheng, Jia Sheng, Chuan Wang, Xiaojing Wang, Yao Yu, Yun Li, Alex Michie, Jianliang Dai, Yang Zhong, Pei Hao, Lei Liu, Yixue Li: MPSQ: a web tool for protein-state searching. Bioinformatics 24(20): 2412-2413 (2008)
32		Guangyong Zheng, Kang Tu, Qing Yang, Yun Xiong, Chaochun Wei, Lu Xie, Yangyong Zhu, Yixue Li: ITFP: an integrated platform of mammalian transcription factors. Bioinformatics 24(20): 2416-2417 (2008)
31		Guohui Ding, Yan Sun, Hong Li, Zhen Wang, Haiwei Fan, Chuan Wang, Dan Yang, Yixue Li: EPGD: a comprehensive web resource for integrating and displaying eukaryotic paralog/paralogon information. Nucleic Acids Research 36(Database-Issue): 255-262 (2008)
30		Jian Cui, Peng Li, Guang Li, Feng Xu, Chen Zhao, Yuhua Li, Zhongnan Yang, Guang Wang, Qingbo Yu, Yi-Xue Li, Tieliu Shi: AtPID: Arabidopsis thaliana protein interactome database - an integrative platform for plant systems biology. Nucleic Acids Research 36(Database-Issue): 999-1008 (2008)
29		Bin Kang, Yuan-Yuan Li, Xiao Chang, Lei Liu, Yi-Xue Li: Modeling the Effects of Cell Cycle M-phase Transcriptional Inhibition on Circadian Oscillation. PLoS Computational Biology 4(3): (2008)
	2007
28		Yixue Li: Biological data integration and high-performance computing. China HPC 2007: 51-61
27		Xiaojing Wang, Wu Wei, Siyuan Zheng, Zhi-Wei Cao, Yixue Li: Ab-origin: An Improved Tool of Heavy Chain Rearrangement Analysis for Human Immunoglobulin. International Conference on Computational Science (2) 2007: 363-369
26		Jingchun Sun, Yan Sun, Guohui Ding, Qi Liu, Chuan Wang, Youyu He, Tieliu Shi, Yixue Li, Zhongming Zhao: InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes. BMC Bioinformatics 8: (2007)
25		Jing Zhao, Guohui Ding, Lin Tao, Hong Yu, Zhong-Hao Yu, Jianhua Luo, Zhi-Wei Cao, Yi-Xue Li: Modular co-evolution of metabolic networks. BMC Bioinformatics 8: (2007)
24		Hui Yu, Feng Wang, Kang Tu, Lu Xie, Yuan-Yuan Li, Yi-Xue Li: Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data. BMC Bioinformatics 8: (2007)
23		Ziliang Qian, Lingyi Lu, Xiao-Jun Liu, Yu-Dong Cai, Yixue Li: An approach to predict transcription factor DNA binding site specificity based upon gene and transcription factor functional categorization. Bioinformatics 23(18): 2449-2454 (2007)
22		Lingyi Lu, Ziliang Qian, Yu-Dong Cai, Yixue Li: ECS: An automatic enzyme classifier based on functional domain composition. Computational Biology and Chemistry 31(3): 226-232 (2007)
	2006
21		Yixue Li, Yu Xu, Gengzhong Feng, Wenqiang Dai: On Loan-to-Value Ratios of Inventory Financing with Doubly Stochastic Poisson Default Processes. APSCC 2006: 663-666
20		Zhuo Wang, Xin-Guang Zhu, Yazhu Chen, Yi-Xue Li, Lei Liu: Comparison of Modularization Methods in Application to Different Biological Networks. VDMB 2006: 185-195
19		Yuan-Yuan Li, Lei Qin, Zong-Ming Guo, Lei Liu, Hao Xu, Pei Hao, Jiong Su, Yixiang Shi, Wei-Zhong He, Yi-Xue Li: In silico discovery of human natural antisense transcripts. BMC Bioinformatics 7: 18 (2006)
18		Xiaojing Yu, Chuan Wang, Yixue Li: Classification of protein quaternary structure by functional domain composition. BMC Bioinformatics 7: 187 (2006)
17		Peilin Jia, Tieliu Shi, Yu-Dong Cai, Yixue Li: Demonstration of two novel methods for predicting functional siRNA efficiency. BMC Bioinformatics 7: 271 (2006)
16		Jing Zhao, Hong Yu, Jianhua Luo, Zhi-Wei Cao, Yi-Xue Li: Hierarchical modularity of nested bow-ties in metabolic networks. BMC Bioinformatics 7: 386 (2006)
15		Sujun Li, Boshu Liu, Rong Zeng, Yu-Dong Cai, Yixue Li: Predicting O-glycosylation sites in mammalian proteins by using SVMs. Computational Biology and Chemistry 30(3): 203-208 (2006)
14		Guoqing Zhang, Zhi-Wei Cao, Qing-ming Luo, Yu-Dong Cai, Yixue Li: Operon prediction based on SVM. Computational Biology and Chemistry 30(3): 233-240 (2006)
13		Xing-Ming Zhao, Ji-Xiang Du, Hong-Qiang Wang, Yunping Zhu, Yixue Li: A new technique for selecting features from protein sequences. IJPRAI 20(2): 271-283 (2006)
12		Chun-Hou Zheng, Yan Chen, Xiu-Xia Li, Yi-Xue Li, Yunping Zhu: Tumor classification based on independent component analysis. IJPRAI 20(2): 297-310 (2006)
11		Zhuo Fang, Jiong Yang, Yixue Li, Qing-ming Luo, Lei Liu: Knowledge guided analysis of microarray data. Journal of Biomedical Informatics: 401-411 (2006)
10		Qiang Lu, Pei Hao, Vasa Curcin, Wei-Zhong He, Yuan-Yuan Li, Qing-ming Luo, Yike Guo, Yi-Xue Li: KDE Bioscience: Platform for bioinformatics analysis workflows. Journal of Biomedical Informatics: 440-450 (2006)
9		Yuan-Yuan Li, Hui Yu, Zong-Ming Guo, Ting-Qing Guo, Kang Tu, Yi-Xue Li: Systematic Analysis of Head-to-Head Gene Organization: Evolutionary Conservation and Potential Biological Relevance. PLoS Computational Biology 2(7): (2006)
8		Yuan-Yuan Li, Hui Yu, Zong-Ming Guo, Ting-Qing Guo, Kang Tu, Yi-Xue Li: Correction: Systematic Analysis of Head-to-Head Gene Organization: Evolutionary Conservation and Potential Biological Relevance. PLoS Computational Biology 2(8): (2006)
7		Guohui Ding, Jiuhong Kang, Qi Liu, Tieliu Shi, Gang Pei, Yixue Li: Insights into the Coupling of Duplication Events and Macroevolution from an Age Profile of Animal Transmembrane Gene Families. PLoS Computational Biology 2(8): (2006)
	2005
6		Jingchun Sun, Jinlin Xu, Zhen Liu, Qi Liu, Aimin Zhao, Tieliu Shi, Yi-Xue Li: Refined phylogenetic profiles method for predicting protein-protein interactions. Bioinformatics 21(16): 3409-3415 (2005)
5		Pei Hao, Wei-Zhong He, Yin Huang, Liang-Xiao Ma, Ying Xu, Hong Xi, Chuan Wang, Boshu Liu, Jin-Miao Wang, Yi-Xue Li, Yang Zhong: MPSS: an integrated database system for surveying a set of proteins. Bioinformatics 21(9): 2142-2143 (2005)
4		Guang-Zheng Zhang, De-Shuang Huang, Yunping Zhu, Yi-Xue Li: Improving protein secondary structure prediction by using the residue conformational classes. Pattern Recognition Letters 26(15): 2346-2352 (2005)
	2004
3		Yong Deng, Qi Liu, Yi-Xue Li: Scoring hidden Markov models to discriminate -barrel membrane proteins. Computational Biology and Chemistry 28(3): 189-194 (2004)
	2003
2		Qi Liu, Yi-Sheng Zhu, Baohua Wang, Yi-Xue Li: A HMM-based method to predict the transmembrane regions of \beta-barrel membrane proteins. Computational Biology and Chemistry 27(1): 69-76 (2003)
1		Qi Liu, Yi-Sheng Zhu, Baohua Wang, Yi-Xue Li: Identification of -barrel membrane proteins based on amino acid composition properties and predicted secondary structure. Computational Biology and Chemistry 27(3): 355-361 (2003)

Coauthor Index

1	Pedro Alves	[34]
2	Randy J. Arnold	[34] [38]
3	Qingqing Cai	[58]
4	Yu-Dong Cai	[14] [15] [17] [22] [23]
5	Yan Cao	[49]
6	Zhi-Wei Cao	[14] [16] [25] [27] [36] [50] [55]
7	Xiao Chang	[29]
8	Guoqiang Chen	[49]
9	Haifeng Chen	[49]
10	Y. Z. Chen	[50]
11	Yan Chen	[12]
12	Yazhu Chen	[20]
13	Yingyi Chen	[49]
14	David E. Clemmer	[34]
15	Jian Cui	[30]
16	Vasa Curcin	[10]
17	Hongyue Dai	[48] [52]
18	Jianliang Dai	[33]
19	Wenqiang Dai	[21]
20	Yong Deng	[3]
21	Guohui Ding	[7] [25] [26] [31] [39] [41] [42] [44] [45] [46] [48] [52]
22	Ji-Xiang Du	[13]
23	Haiwei Fan	[31]
24	Zhuo Fang	[11]
25	Gengzhong Feng	[21]
26	KaiRui Feng	[56]
27	KaiYan Feng	[56]
28	JunHui Gao	[56]
29	Christian Gieger	[43]
30	Ting-Qing Guo	[8] [9]
31	Yike Guo	[10]
32	Zong-Ming Guo	[8] [9] [19]
33	Pei Hao	[5] [10] [19] [33] [43] [44] [51]
34	Fei He	[57]
35	Wei-Zhong He	[5] [10] [19]
36	Ying He	[46] [57]
37	Youyu He	[26]
38	De-Shuang Huang (Deshuang Huang)	[4]
39	Tao Huang	[48] [52]
40	Yin Huang	[5]
41	Zhimin Huang	[49]
42	Peilin Jia	[17]
43	Yuanhu Ju	[57]
44	Bin Kang	[29]
45	Hong Kang	[50]
46	Jiuhong Kang	[7]
47	Michael Kreutzer	[41]
48	Yong-Hwan Lee	[39]
49	Chun Li	[47] [54]
50	Guang Li	[30]
51	Hong Li	[31] [40] [42] [46] [57]
52	Jing Li	[57]
53	Peng Li	[30]
54	Su-Jun Li	[40]
55	Sujun Li	[15]
56	Weihua Li	[49]
57	Xia Li	[53]
58	Xiang Li	[53]
59	Xiu-Xia Li	[12]
60	Xuan Li	[51]
61	Yan Li	[53]
62	Yanyun Li	[58]
63	Yong Fuga Li	[38]
64	Yuan-Yuan Li	[8] [9] [10] [19] [24] [29] [47] [54]
65	Yuhua Li	[30]
66	Yun Li	[33] [44] [51]
67	Zuofeng Li	[58]
68	Bao-Hong Liu	[47] [54]
69	Boshu Liu	[5] [15] [40]
70	Lei Liu	[11] [19] [20] [29] [33] [45] [48] [52] [56]
71	Qi Liu	[1] [2] [3] [6] [7] [26] [48] [50] [52] [58]
72	Xiao-Jun Liu	[23]
73	Xinyi Liu	[49]
74	Xueping Liu	[50]
75	Zhen Liu	[6]
76	Peter Lorenz	[41]
77	Lingyi Lu	[22] [23]
78	Qiang Lu	[10] [37]
79	Jianhua Luo	[16] [25]
80	Qing-ming Luo	[10] [11] [14] [37]
81	Daqing Lv	[57]
82	Sali Lv	[53]
83	Liang-Xiao Ma	[5]
84	Alex Michie	[33]
85	Jongsun Park	[39]
86	Gang Pei	[7]
87	Mao Peng	[40]
88	Jie Ping	[43] [44]
89	Ziliang Qian	[22] [23] [35]
90	Lei Qin	[19]
91	Predrag Radivojac	[34] [38]
92	James P. Reilly	[34]
93	Jia Sheng	[33]
94	Quanhu Sheng	[34] [38]
95	Tieliu Shi	[6] [7] [17] [26] [30]
96	Ting Shi	[49]
97	Yixiang Shi	[19] [37]
98	Jiong Su	[19]
99	Han Sun	[57]
100	Jie Sun	[53]
101	Jing Sun	[36]
102	Jingchun Sun	[6] [26]
103	Yan Lindsay Sun (Yan Sun)	[26] [31]
104	Eugene Tan	[48]
105	Yejun Tan	[52]
106	Haixu Tang	[34] [38]
107	Kailin Tang	[50] [55]
108	Lin Tao	[25] [36] [50]
109	Hans-Jürgen Thiesen	[41]
110	Kang Tu	[8] [9] [24] [32] [43] [44] [47] [51]
111	Zhidong Tu	[48] [52]
112	Baohua Wang	[1] [2]
113	Chuan Wang	[5] [18] [26] [31] [33] [40] [46]
114	Feng Wang	[24]
115	Guang Wang	[30]
116	Hong-Qiang Wang	[13]
117	Jin-Miao Wang	[5]
118	Jingfang Wang	[51]
119	Qi Wang	[49]
120	Qianghu Wang	[53]
121	Xiaojing Wang	[27] [33] [36]
122	Yuefei Wang	[49]
123	Zhen Wang	[31] [45]
124	Zhuo Wang	[20]
125	Rui Wang-Sattler	[43] [57]
126	Chaochun Wei	[32] [35]
127	Wu Wei	[27]
128	Di Wu	[36]
129	Geng Wu	[49]
130	Jia-Rui Wu	[40]
131	Hong Xi	[5] [39]
132	Lu Xie	[24] [32] [35] [42] [46] [48] [52] [57]
133	Yun Xiong	[32]
134	Congjian Xu	[58]
135	Feng Xu	[30]
136	Hao Xu	[19]
137	Jinlin Xu	[6]
138	Qingwei Xu	[37]
139	Ying Xu	[5]
140	Yu Xu	[21]
141	Zhiyin Xun	[34]
142	Dan Yang	[31]
143	Haixiu Yang	[53]
144	Jiong Yang	[11]
145	Qing Yang	[32] [35]
146	Zhongnan Yang	[30]
147	Hao Ye	[50]
148	Li Ye	[50]
149	Zhi-Qiang Ye	[54]
150	Hong Yu	[16] [25]
151	Hui Yu	[8] [9] [24] [47] [54]
152	Qingbo Yu	[30]
153	Xiaojing Yu	[18]
154	Yao Yu	[33] [44]
155	Zhong-Hao Yu	[25] [45] [57]
156	Weilan Yuan	[57]
157	Rong Zeng	[15] [34] [40]
158	Duanfeng Zhang	[50]
159	Guang-Zheng Zhang	[4]
160	Guoqing Zhang	[14] [37] [57]
161	Jian Zhang	[49]
162	Jianshe Zhang	[57]
163	Menghuan Zhang	[57]
164	Xiaoyan Zhang	[58]
165	Aimin Zhao	[6]
166	Chen Zhao	[30]
167	Jing Zhao	[16] [25]
168	Xin Zhao	[58]
169	Xing-Ming Zhao	[13]
170	Yaxue Zhao	[49]
171	Zhongming Zhao	[26]
172	Chun-Hou Zheng (Chunhou Zheng)	[12]
173	Guangyong Zheng	[32] [35]
174	Siyuan Zheng	[27] [33] [36] [43] [44] [51]
175	Yang Zhong	[5] [33] [43]
176	Meng Zhou	[53]
177	Liang Zhu	[49]
178	Ruixin Zhu	[50] [55]
179	Xin-Guang Zhu	[20]
180	Yangyong Zhu	[32] [35]
181	Yi-Sheng Zhu	[1] [2]
182	Yunping Zhu	[4] [12] [13]

Last update Fri May 25 01:42:58 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page