Yixue Li

Yi-Xue Li

	2009
39		Zhen Wang, Guohui Ding, Zhong-Hao Yu, Lei Liu, Yixue Li: CHSMiner: a GUI tool to identify chromosomal homologous segments. Algorithms for Molecular Biology 4: (2009)
38		Pei Hao, SiYuan Zheng, Jie Ping, Kang Tu, Christian Gieger, Rui Wang-Sattler, Yang Zhong, Yixue Li: Human gene expression sensitivity according to large scale meta-analysis. BMC Bioinformatics 10(S-1): (2009)
37		Hong Li, Guohui Ding, Lu Xie, Yixue Li: PAnnBuilder: an R package for assembling proteomic annotation data. Bioinformatics 25(8): 1094-1095 (2009)
36		Guohui Ding, Peter Lorenz, Michael Kreutzer, Yixue Li, Hans-Jürgen Thiesen: SysZNF: the C2H2 zinc finger gene database. Nucleic Acids Research 37(Database-Issue): 267-273 (2009)
35		Su-Jun Li, Mao Peng, Hong Li, Bo-Shu Liu, Chuan Wang, Jia-Rui Wu, Yi-Xue Li, Rong Zeng: Sys-BodyFluid: a systematical database for human body fluid proteome research. Nucleic Acids Research 37(Database-Issue): 907-912 (2009)
34		Hong Xi, Jongsun Park, Guohui Ding, Yong-Hwan Lee, Yixue Li: SysPIMP: the web-based systematical platform for identifying human disease-related mutated sequences from mass spectrometry. Nucleic Acids Research 37(Database-Issue): 913-920 (2009)
	2008
33		Yong Fuga Li, Randy J. Arnold, Yixue Li, Predrag Radivojac, Quanhu Sheng, Haixu Tang: A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics. RECOMB 2008: 167-180
32		Qingwei Xu, Yixiang Shi, Qiang Lu, Guo-qing Zhang, Qing-ming Luo, Yixue Li: GORouter: an RDF model for providing semantic query and inference services for Gene Ontology and its associations. BMC Bioinformatics 9(S-1): (2008)
31		Xiaojing Wang, Di Wu, SiYuan Zheng, Jing Sun, Lin Tao, Yixue Li, Zhi-Wei Cao: Ab-origin: an enhanced tool to identify the sourcing gene segments in germline for rearranged antibodies. BMC Bioinformatics 9(S-12): (2008)
30		Guangyong Zheng, Ziliang Qian, Qing Yang, Chaochun Wei, Lu Xie, Yangyong Zhu, Yixue Li: The combination approach of SVM and ECOC for powerful identification and classification of transcription factor. BMC Bioinformatics 9: (2008)
29		Pedro Alves, Randy J. Arnold, David E. Clemmer, Yixue Li, James P. Reilly, Quanhu Sheng, Haixu Tang, Zhiyin Xun, Rong Zeng, Predrag Radivojac: Fast and accurate identification of semi-tryptic peptides in shotgun proteomics. Bioinformatics 24(1): 102-109 (2008)
28		SiYuan Zheng, Jia Sheng, Chuan Wang, Xiaojing Wang, Yao Yu, Yun Li, Alex Michie, Jianliang Dai, Yang Zhong, Pei Hao, Lei Liu, Yixue Li: MPSQ: a web tool for protein-state searching. Bioinformatics 24(20): 2412-2413 (2008)
27		Guangyong Zheng, Kang Tu, Qing Yang, Yun Xiong, Chaochun Wei, Lu Xie, Yangyong Zhu, Yixue Li: ITFP: an integrated platform of mammalian transcription factors. Bioinformatics 24(20): 2416-2417 (2008)
26		Guohui Ding, Yan Sun, Hong Li, Zhen Wang, Haiwei Fan, Chuan Wang, Dan Yang, Yixue Li: EPGD: a comprehensive web resource for integrating and displaying eukaryotic paralog/paralogon information. Nucleic Acids Research 36(Database-Issue): 255-262 (2008)
25		Jian Cui, Peng Li, Guang Li, Feng Xu, Chen Zhao, Yuhua Li, Zhongnan Yang, Guang Wang, Qingbo Yu, Yi-Xue Li, Tieliu Shi: AtPID: Arabidopsis thaliana protein interactome database - an integrative platform for plant systems biology. Nucleic Acids Research 36(Database-Issue): 999-1008 (2008)
	2007
24		Yixue Li: Biological data integration and high-performance computing. China HPC 2007: 51-61
23		Xiaojing Wang, Wu Wei, SiYuan Zheng, Zhi-Wei Cao, Yixue Li: Ab-origin: An Improved Tool of Heavy Chain Rearrangement Analysis for Human Immunoglobulin. International Conference on Computational Science (2) 2007: 363-369
22		Jingchun Sun, Yan Sun, Guohui Ding, Qi Liu, Chuan Wang, Youyu He, Tieliu Shi, Yixue Li, Zhongming Zhao: InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes. BMC Bioinformatics 8: (2007)
21		Jing Zhao, Guohui Ding, Lin Tao, Hong Yu, Zhong-Hao Yu, Jianhua Luo, Zhi-Wei Cao, Yi-Xue Li: Modular co-evolution of metabolic networks. BMC Bioinformatics 8: (2007)
20		Hui Yu, Feng Wang, Kang Tu, Lu Xie, Yuan-Yuan Li, Yi-Xue Li: Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data. BMC Bioinformatics 8: (2007)
19		Ziliang Qian, Lingyi Lu, Xiao-Jun Liu, Yu-Dong Cai, Yixue Li: An approach to predict transcription factor DNA binding site specificity based upon gene and transcription factor functional categorization. Bioinformatics 23(18): 2449-2454 (2007)
18		Lingyi Lu, Ziliang Qian, Yu-Dong Cai, Yixue Li: ECS: An automatic enzyme classifier based on functional domain composition. Computational Biology and Chemistry 31(3): 226-232 (2007)
	2006
17		Zhuo Wang, Xin-Guang Zhu, Yazhu Chen, Yi-Xue Li, Lei Liu: Comparison of Modularization Methods in Application to Different Biological Networks. VDMB 2006: 185-195
16		Yuan-Yuan Li, Lei Qin, Zong-Ming Guo, Lei Liu, Hao Xu, Pei Hao, Jiong Su, Yixiang Shi, Wei-Zhong He, Yi-Xue Li: In silico discovery of human natural antisense transcripts. BMC Bioinformatics 7: 18 (2006)
15		Xiaojing Yu, Chuan Wang, Yixue Li: Classification of protein quaternary structure by functional domain composition. BMC Bioinformatics 7: 187 (2006)
14		Peilin Jia, Tieliu Shi, Yu-Dong Cai, Yixue Li: Demonstration of two novel methods for predicting functional siRNA efficiency. BMC Bioinformatics 7: 271 (2006)
13		Jing Zhao, Hong Yu, Jianhua Luo, Zhi-Wei Cao, Yi-Xue Li: Hierarchical modularity of nested bow-ties in metabolic networks. BMC Bioinformatics 7: 386 (2006)
12		Sujun Li, Boshu Liu, Rong Zeng, Yu-Dong Cai, Yixue Li: Predicting O-glycosylation sites in mammalian proteins by using SVMs. Computational Biology and Chemistry 30(3): 203-208 (2006)
11		Guo-qing Zhang, Zhi-Wei Cao, Qing-ming Luo, Yu-Dong Cai, Yixue Li: Operon prediction based on SVM. Computational Biology and Chemistry 30(3): 233-240 (2006)
10		Xing-Ming Zhao, Ji-Xiang Du, Hong-Qiang Wang, Yunping Zhu, Yixue Li: A new technique for selecting features from protein sequences. IJPRAI 20(2): 271-283 (2006)
9		Chun-Hou Zheng, Yan Chen, Xiu-Xia Li, Yi-Xue Li, Yun-Ping Zhu: Tumor classification based on independent component analysis. IJPRAI 20(2): 297-310 (2006)
8		Zhuo Fang, Jiong Yang, Yixue Li, Qing-ming Luo, Lei Liu: Knowledge guided analysis of microarray data. Journal of Biomedical Informatics: 401-411 (2006)
7		Qiang Lu, Pei Hao, Vasa Curcin, Wei-Zhong He, Yuan-Yuan Li, Qing-ming Luo, Yike Guo, Yi-Xue Li: KDE Bioscience: Platform for bioinformatics analysis workflows. Journal of Biomedical Informatics: 440-450 (2006)
	2005
6		Jingchun Sun, Jinlin Xu, Zhen Liu, Qi Liu, Aimin Zhao, Tieliu Shi, Yi-Xue Li: Refined phylogenetic profiles method for predicting protein-protein interactions. Bioinformatics 21(16): 3409-3415 (2005)
5		Pei Hao, Wei-Zhong He, Yin Huang, Liang-Xiao Ma, Ying Xu, Hong Xi, Chuan Wang, Bo-Shu Liu, Jin-Miao Wang, Yi-Xue Li, Yang Zhong: MPSS: an integrated database system for surveying a set of proteins. Bioinformatics 21(9): 2142-2143 (2005)
4		Guang-Zheng Zhang, De-Shuang Huang, Yun-Ping Zhu, Yi-Xue Li: Improving protein secondary structure prediction by using the residue conformational classes. Pattern Recognition Letters 26(15): 2346-2352 (2005)
	2004
3		Yong Deng, Qi Liu, Yi-Xue Li: Scoring hidden Markov models to discriminate -barrel membrane proteins. Computational Biology and Chemistry 28(3): 189-194 (2004)
	2003
2		Qi Liu, Yi-Sheng Zhu, Baohua Wang, Yi-Xue Li: A HMM-based method to predict the transmembrane regions of \beta-barrel membrane proteins. Computational Biology and Chemistry 27(1): 69-76 (2003)
1		Qi Liu, Yi-Sheng Zhu, Baohua Wang, Yi-Xue Li: Identification of -barrel membrane proteins based on amino acid composition properties and predicted secondary structure. Computational Biology and Chemistry 27(3): 355-361 (2003)

Coauthor Index

1	Pedro Alves	[29]
2	Randy J. Arnold	[29] [33]
3	Yu-Dong Cai	[11] [12] [14] [18] [19]
4	Zhi-Wei Cao	[11] [13] [21] [23] [31]
5	Yan Chen	[9]
6	Yazhu Chen	[17]
7	David E. Clemmer	[29]
8	Jian Cui	[25]
9	Vasa Curcin	[7]
10	Jianliang Dai	[28]
11	Yong Deng	[3]
12	Guohui Ding	[21] [22] [26] [34] [36] [37] [39]
13	Ji-Xiang Du	[10]
14	Haiwei Fan	[26]
15	Zhuo Fang	[8]
16	Christian Gieger	[38]
17	Yike Guo	[7]
18	Zong-Ming Guo	[16]
19	Pei Hao	[5] [7] [16] [28] [38]
20	Wei-Zhong He	[5] [7] [16]
21	Youyu He	[22]
22	De-Shuang Huang (Deshuang Huang)	[4]
23	Yin Huang	[5]
24	Peilin Jia	[14]
25	Michael Kreutzer	[36]
26	Yong-Hwan Lee	[34]
27	Guang Li	[25]
28	Hong Li	[26] [35] [37]
29	Peng Li	[25]
30	Su-Jun Li	[35]
31	Sujun Li	[12]
32	Xiu-Xia Li	[9]
33	Yong Fuga Li	[33]
34	Yuan-Yuan Li	[7] [16] [20]
35	Yuhua Li	[25]
36	Yun Li	[28]
37	Bo-Shu Liu	[5] [35]
38	Boshu Liu	[12]
39	Lei Liu	[8] [16] [17] [28] [39]
40	Qi Liu	[1] [2] [3] [6] [22]
41	Xiao-Jun Liu	[19]
42	Zhen Liu	[6]
43	Peter Lorenz	[36]
44	Lingyi Lu	[18] [19]
45	Qiang Lu	[7] [32]
46	Jianhua Luo	[13] [21]
47	Qing-ming Luo	[7] [8] [11] [32]
48	Liang-Xiao Ma	[5]
49	Alex Michie	[28]
50	Jongsun Park	[34]
51	Mao Peng	[35]
52	Jie Ping	[38]
53	Ziliang Qian	[18] [19] [30]
54	Lei Qin	[16]
55	Predrag Radivojac	[29] [33]
56	James P. Reilly	[29]
57	Jia Sheng	[28]
58	Quanhu Sheng	[29] [33]
59	Tieliu Shi	[6] [14] [22] [25]
60	Yixiang Shi	[16] [32]
61	Jiong Su	[16]
62	Jing Sun	[31]
63	Jingchun Sun	[6] [22]
64	Yan Lindsay Sun (Yan Sun)	[22] [26]
65	Haixu Tang	[29] [33]
66	Lin Tao	[21] [31]
67	Hans-Jürgen Thiesen	[36]
68	Kang Tu	[20] [27] [38]
69	Baohua Wang	[1] [2]
70	Chuan Wang	[5] [15] [22] [26] [28] [35]
71	Feng Wang	[20]
72	Guang Wang	[25]
73	Hong-Qiang Wang	[10]
74	Jin-Miao Wang	[5]
75	Xiaojing Wang	[23] [28] [31]
76	Zhen Wang	[26] [39]
77	Zhuo Wang	[17]
78	Rui Wang-Sattler	[38]
79	Chaochun Wei	[27] [30]
80	Wu Wei	[23]
81	Di Wu	[31]
82	Jia-Rui Wu	[35]
83	Hong Xi	[5] [34]
84	Lu Xie	[20] [27] [30] [37]
85	Yun Xiong	[27]
86	Feng Xu	[25]
87	Hao Xu	[16]
88	Jinlin Xu	[6]
89	Qingwei Xu	[32]
90	Ying Xu	[5]
91	Zhiyin Xun	[29]
92	Dan Yang	[26]
93	Jiong Yang	[8]
94	Qing Yang	[27] [30]
95	Zhongnan Yang	[25]
96	Hong Yu	[13] [21]
97	Hui Yu	[20]
98	Qingbo Yu	[25]
99	Xiaojing Yu	[15]
100	Yao Yu	[28]
101	Zhong-Hao Yu	[21] [39]
102	Rong Zeng	[12] [29] [35]
103	Guang-Zheng Zhang	[4]
104	Guo-qing Zhang	[11] [32]
105	Aimin Zhao	[6]
106	Chen Zhao	[25]
107	Jing Zhao	[13] [21]
108	Xing-Ming Zhao	[10]
109	Zhongming Zhao	[22]
110	Chun-Hou Zheng (Chunhou Zheng)	[9]
111	Guangyong Zheng	[27] [30]
112	SiYuan Zheng	[23] [28] [31] [38]
113	Yang Zhong	[5] [28] [38]
114	Xin-Guang Zhu	[17]
115	Yangyong Zhu	[27] [30]
116	Yi-Sheng Zhu	[1] [2]
117	Yun-Ping Zhu	[4] [9]
118	Yunping Zhu	[10]

Colors in the list of coauthors