 | 2009 |
| 17 |  | Izhar Wallach,
Ryan H. Lilien:
Prediction of sub-cavity binding preferences using an adaptive physicochemical structure representation.
Bioinformatics 25(12): (2009) |
| 16 |  | Izhar Wallach,
Ryan H. Lilien:
The protein-small-molecule database, a non-redundant structural resource for the analysis of protein-ligand binding.
Bioinformatics 25(5): 615-620 (2009) |
| 2008 |
| 15 |  | Clifton Forlines,
Ryan H. Lilien:
Adapting a single-user, single-display molecular visualization application for use in a multi-user, multi-display environment.
AVI 2008: 367-371 |
| 14 |  | Ivelin Georgiev,
Ryan H. Lilien,
Bruce Randall Donald:
The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles.
Journal of Computational Chemistry 29(10): 1527-1542 (2008) |
| 2006 |
| 13 |  | Ivelin Georgiev,
Ryan H. Lilien,
Bruce Randall Donald:
Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design.
ISMB (Supplement of Bioinformatics) 2006: 174-183 |
| 12 |  | Ivelin Georgiev,
Ryan H. Lilien,
Bruce Randall Donald:
A Novel Minimized Dead-End Elimination Criterion and Its Application to Protein Redesign in a Hybrid Scoring and Search Algorithm for Computing Partition Functions over Molecular Ensembles.
RECOMB 2006: 530-545 |
| 2005 |
| 11 |  | Ramgopal R. Mettu,
Ryan H. Lilien,
Bruce Randall Donald:
High-throughput inference of protein-protein interfaces from unassigned NMR data.
ISMB (Supplement of Bioinformatics) 2005: 292-301 |
| 10 |  | Ryan H. Lilien,
Brian W. Stevens,
Amy C. Anderson,
Bruce Randall Donald:
A Novel Ensemble-Based Scoring and Search Algorithm for Protein Redesign and Its Application to Modify the Substrate Specificity of the Gramicidin Synthetase A Phenylalanine Adenylation Enzyme.
Journal of Computational Biology 12(6): 740-761 (2005) |
| 2004 |
| 9 |  | Ryan H. Lilien,
Brian W. Stevens,
Amy C. Anderson,
Bruce Randall Donald:
A novel ensemble-based scoring and search algorithm for protein redesign, and its application to modify the substrate specificity of the gramicidin synthetase a phenylalanine adenylation enzyme.
RECOMB 2004: 46-57 |
| 8 |  | Christopher James Langmead,
Anthony K. Yan,
Ryan H. Lilien,
Lincong Wang,
Bruce Randall Donald:
A Polynomial-Time Nuclear Vector Replacement Algorithm for Automated NMR Resonance Assignments.
Journal of Computational Biology 11(2/3): 277-298 (2004) |
| 7 |  | Richard E. Gillilan,
Ryan H. Lilien:
Optimization and dynamics of protein-protein complexes using B-splines.
Journal of Computational Chemistry 25(13): 1630-1646 (2004) |
| 2003 |
| 6 |  | Lincong Wang,
Ramgopal R. Mettu,
Ryan H. Lilien,
Bruce Randall Donald:
An Exact Algorithm For Determining Protein Backbone Structure From NH Residual Dipolar Couplings.
CSB 2003: 611-612 |
| 5 |  | Christopher James Langmead,
Anthony K. Yan,
Ryan H. Lilien,
Lincong Wang,
Bruce Randall Donald:
Large a polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments.
RECOMB 2003: 176-187 |
| 4 |  | Ryan H. Lilien,
Hany Farid,
Bruce Randall Donald:
Probabilistic Disease Classification of Expression-Dependent Proteomic Data from Mass Spectrometry of Human Serum.
Journal of Computational Biology 10(6): 925-946 (2003) |
| 2001 |
| 3 |  | Bruce Randall Donald,
Christopher Bailey-Kellogg,
Jack Kelley,
Ryan H. Lilien:
Physical Geometric Algorithms for Structural Molecular Biology.
ICRA 2001: 940-947 |
| 1999 |
| 2 |  | Daniel P. Huttenlocher,
Ryan H. Lilien,
Clark F. Olson:
View-Based Recognition Using an Eigenspace Approximation to the Hausdorff Measure.
IEEE Trans. Pattern Anal. Mach. Intell. 21(9): 951-955 (1999) |
| 1996 |
| 1 |  | Daniel P. Huttenlocher,
Ryan H. Lilien,
Clark F. Olson:
Object Recognition Using Subspace Methods.
ECCV (1) 1996: 536-545 |