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50Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVeli Mäkinen, Gonzalo Navarro, Jouni Sirén, Niko Välimäki: Storage and Retrieval of Individual Genomes. RECOMB 2009: 121-137
49Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDiego Arroyuelo, Francisco Claude, Sebastian Maneth, Veli Mäkinen, Gonzalo Navarro, Kim Nguyen, Jouni Sirén, Niko Välimäki: Fast In-Memory XPath Search over Compressed Text and Tree Indexes CoRR abs/0907.2089: (2009)
48Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLFrançois Nicolas, Veli Mäkinen, Esko Ukkonen: Efficient construction of maximal and minimal representations of motifs of a string. Theor. Comput. Sci. 410(30-32): 2999-3005 (2009)
2008
47Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJohannes Fischer, Veli Mäkinen, Gonzalo Navarro: An(other) Entropy-Bounded Compressed Suffix Tree. CPM 2008: 152-165
46Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVeli Mäkinen, Gonzalo Navarro: On Self-Indexing Images - Image Compression with Added Value. DCC 2008: 422-431
45Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJohannes Fischer, Veli Mäkinen, Niko Välimäki: Space Efficient String Mining under Frequency Constraints. ICDM 2008: 193-202
44Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJouni Sirén, Niko Välimäki, Veli Mäkinen, Gonzalo Navarro: Run-Length Compressed Indexes Are Superior for Highly Repetitive Sequence Collections. SPIRE 2008: 164-175
43Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVeli Mäkinen: Compressed Suffix Array. Encyclopedia of Algorithms 2008
42Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVeli Mäkinen, Gonzalo Navarro: Compressed Text Indexing. Encyclopedia of Algorithms 2008
41Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVeli Mäkinen, Esko Ukkonen: Point Pattern Matching. Encyclopedia of Algorithms 2008
40Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVeli Mäkinen, Gonzalo Navarro: Dynamic entropy-compressed sequences and full-text indexes. ACM Transactions on Algorithms 4(3): (2008)
39Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLSebastian Böcker, Veli Mäkinen: Combinatorial Approaches for Mass Spectra Recalibration. IEEE/ACM Trans. Comput. Biology Bioinform. 5(1): 91-100 (2008)
2007
38Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLNiko Välimäki, Veli Mäkinen: Space-Efficient Algorithms for Document Retrieval. CPM 2007: 205-215
37Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVeli Mäkinen, Gonzalo Navarro: Implicit Compression Boosting with Applications to Self-indexing. SPIRE 2007: 229-241
36Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLNiko Välimäki, Wolfgang Gerlach, Kashyap Dixit, Veli Mäkinen: Engineering a Compressed Suffix Tree Implementation. WEA 2007: 217-228
35Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGonzalo Navarro, Veli Mäkinen: Compressed full-text indexes. ACM Comput. Surv. 39(1): (2007)
34Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaolo Ferragina, Giovanni Manzini, Veli Mäkinen, Gonzalo Navarro: Compressed representations of sequences and full-text indexes. ACM Transactions on Algorithms 3(2): (2007)
33Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLNiko Välimäki, Wolfgang Gerlach, Kashyap Dixit, Veli Mäkinen: Compressed suffix tree - a basis for genome-scale sequence analysis. Bioinformatics 23(5): 629-630 (2007)
32Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLKimmo Fredriksson, Veli Mäkinen, Gonzalo Navarro: Rotation and lighting invariant template matching. Inf. Comput. 205(7): 1096-1113 (2007)
31Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVeli Mäkinen, Gonzalo Navarro: Rank and select revisited and extended. Theor. Comput. Sci. 387(3): 332-347 (2007)
2006
30Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVeli Mäkinen, Gonzalo Navarro: Dynamic Entropy-Compressed Sequences and Full-Text Indexes. CPM 2006: 306-317
29Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVeli Mäkinen, Gonzalo Navarro: Position-Restricted Substring Searching. LATIN 2006: 703-714
28Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLKimmo Fredriksson, Veli Mäkinen, Gonzalo Navarro: Flexible Music Retrieval in Sublinear Time. Int. J. Found. Comput. Sci. 17(6): 1345-1364 (2006)
27Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLSzymon Grabowski, Gonzalo Navarro, Rafal Przywarski, Alejandro Salinger, Veli Mäkinen: A Simple Alphabet-independent Fm-index. Int. J. Found. Comput. Sci. 17(6): 1365-1384 (2006)
2005
26Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVeli Mäkinen, Gonzalo Navarro: Succinct Suffix Arrays Based on Run-Length Encoding. CPM 2005: 45-56
25Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLSebastian Böcker, Veli Mäkinen: Combinatorial Approaches for Mass Spectra Recalibration. Computational Proteomics 2005
24Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLSebastian Böcker, Veli Mäkinen: Maximum line-pair stabbing problem and its variations. EWCG 2005: 183-186
23no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLKimmo Fredriksson, Veli Mäkinen, Gonzalo Navarro: Flexible music retrieval in sublinear time. Stringology 2005: 174-189
22no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLSzymon Grabowski, Veli Mäkinen, Gonzalo Navarro, Alejandro Salinger: A simple alphabet-independent FM-index. Stringology 2005: 231-245
21Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVeli Mäkinen, Gonzalo Navarro, Esko Ukkonen: Transposition invariant string matching. J. Algorithms 56(2): 124-153 (2005)
20Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLKjell Lemström, Veli Mäkinen: On minimizing pattern splitting in multi-track string matching. J. Discrete Algorithms 3(2-4): 248-266 (2005)
19no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVeli Mäkinen, Gonzalo Navarro: Succinct Suffix Arrays based on Run-Length Encoding. Nord. J. Comput. 12(1): 40-66 (2005)
2004
18Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVeli Mäkinen, Gonzalo Navarro: Compressed Compact Suffix Arrays. CPM 2004: 420-433
17Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVeli Mäkinen, Gonzalo Navarro, Kunihiko Sadakane: Advantages of Backward Searching - Efficient Secondary Memory and Distributed Implementation of Compressed Suffix Arrays. ISAAC 2004: 681-692
16Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLKimmo Fredriksson, Veli Mäkinen, Gonzalo Navarro: Rotation and Lighting Invariant Template Matching. LATIN 2004: 39-48
15Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaolo Ferragina, Giovanni Manzini, Veli Mäkinen, Gonzalo Navarro: An Alphabet-Friendly FM-Index. SPIRE 2004: 150-160
14Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLSzymon Grabowski, Veli Mäkinen, Gonzalo Navarro: First Huffman, Then Burrows-Wheeler: A Simple Alphabet-Independent FM-Index. SPIRE 2004: 210-211
13Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLShunsuke Inenaga, Teemu Kivioja, Veli Mäkinen: Finding Missing Patterns. WABI 2004: 463-474
2003
12Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLKjell Lemström, Veli Mäkinen: On Minimizing Pattern Splitting in Multi-track String Matching. CPM 2003: 237-253
11Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLEsko Ukkonen, Kjell Lemström, Veli Mäkinen: Sweepline the Music! Computer Science in Perspective 2003: 330-342
10Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLEsko Ukkonen, Kjell Lemström, Veli Mäkinen: Geometric algorithms for transposition invariant content based music retrieval. ISMIR 2003
9Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLKjell Lemström, Veli Mäkinen, Anna Pienimäki, M. Turkia, Esko Ukkonen: The C-BRAHMS project. ISMIR 2003
8Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVeli Mäkinen, Gonzalo Navarro, Esko Ukkonen: Algorithms for Transposition Invariant String Matching. STACS 2003: 191-202
7Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVeli Mäkinen, Esko Ukkonen, Gonzalo Navarro: Approximate Matching of Run-Length Compressed Strings. Algorithmica 35(4): 347-369 (2003)
6Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVeli Mäkinen: Compact Suffix Array -- A Space-Efficient Full-Text Index. Fundam. Inform. 56(1-2): 191-210 (2003)
2002
5Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVeli Mäkinen, Esko Ukkonen: Local Similarity Based Point-Pattern Matching. CPM 2002: 115-132
2001
4Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVeli Mäkinen: Trade Off Between Compression and Search Times in Compact Suffix Array. ALENEX 2001: 189-201
3Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVeli Mäkinen, Gonzalo Navarro, Esko Ukkonen: Approximate Matching of Run-Length Compressed Strings. CPM 2001: 31-49
2no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVeli Mäkinen: Using Edit Distance in Point-Pattern Matching. SPIRE 2001: 153-161
2000
1Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVeli Mäkinen: Compact Suffix Array. CPM 2000: 305-319

Coauthor Index

1Diego Arroyuelo [49]
2Sebastian Böcker [24] [25] [39]
3Francisco Claude [49]
4Kashyap Dixit [33] [36]
5Paolo Ferragina [15] [34]
6Johannes Fischer [45] [47]
7Kimmo Fredriksson [16] [23] [28] [32]
8Wolfgang Gerlach [33] [36]
9Szymon Grabowski [14] [22] [27]
10Shunsuke Inenaga [13]
11Teemu Kivioja [13]
12Kjell Lemström [9] [10] [11] [12] [20]
13Sebastian Maneth [49]
14Giovanni Manzini [15] [34]
15Gonzalo Navarro [3] [7] [8] [14] [15] [16] [17] [18] [19] [21] [22] [23] [26] [27] [28] [29] [30] [31] [32] [34] [35] [37] [40] [42] [44] [46] [47] [49] [50]
16Kim Nguyen [49]
17François Nicolas [48]
18Anna Pienimäki [9]
19Rafal Przywarski [27]
20Kunihiko Sadakane [17]
21Alejandro Salinger [22] [27]
22Jouni Sirén [44] [49] [50]
23M. Turkia [9]
24Esko Ukkonen [3] [5] [7] [8] [9] [10] [11] [21] [41] [48]
25Niko Välimäki [33] [36] [38] [44] [45] [49] [50]

Colors in the list of coauthors

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