Bin Ma

	2009
87		Weiming Li, Bin Ma, Kaizhong Zhang: Amino Acid Classification and Hash Seeds for Homology Search. BICoB 2009: 44-51
86		Chong Long, Jie Zhang, Minlie Huang, Xiaoyan Zhu, Ming Li, Bin Ma: Specialized Review Selection for Feature Rating Estimation. Web Intelligence 2009: 214-221
85		Xiaowen Liu, Yonghua Han, Denis Yuen, Bin Ma: Automated protein (re)sequencing with MS/MS and a homologous database yields almost full coverage and accuracy. Bioinformatics 25(17): 2174-2180 (2009)
84		Bin Ma, Hongyi Yao: Seed optimization for i.i.d. similarities is no easier than optimal Golomb ruler design. Inf. Process. Lett. 109(19): 1120-1124 (2009)
83		Shihyen Chen, Bin Ma, Kaizhong Zhang: On the similarity metric and the distance metric. Theor. Comput. Sci. 410(24-25): 2365-2376 (2009)
	2008
82		Xiaole Bai, Wenjun Gu, Sriram Chellappan, Xun Wang, Dong Xuan, Bin Ma: PAS: Predicate-Based Authentication Services Against Powerful Passive Adversaries. ACSAC 2008: 433-442
81		Bin Ma, Hongyi Yao: Seed Optimization Is No Easier than Optimal Golomb Ruler Design. APBC 2008: 133-144
80		Chong Long, Xiaoyan Zhu, Ming Li, Bin Ma: Information shared by many objects. CIKM 2008: 1213-1220
79		Bin Ma: Why Greed Works for Shortest Common Superstring Problem. CPM 2008: 244-254
78		Chien-Lin Huang, Chung-Hsien Wu, Haizhou Li, Chia-Hsin Hsieh, Bin Ma: Unsupervised pronunciation grammar growing using knowledge-based and data-driven approaches. ICME 2008: 1097-1100
77		Omid Dehzangi, Bin Ma, Chng Eng Siong, Haizhou Li: Fuzzy rule selection using Iterative Rule Learning for speech data classification. ICPR 2008: 1-4
76		Bin Ma, Xiaoming Sun: More Efficient Algorithms for Closest String and Substring Problems. RECOMB 2008: 396-409
75		Bin Ma: Peptide De Novo Sequencing with MS/MS. Encyclopedia of Algorithms 2008
74		Hao Lin, Zefeng Zhang, Michael Q. Zhang, Bin Ma, Ming Li: ZOOM! Zillions of oligos mapped. Bioinformatics 24(21): 2431-2437 (2008)
73		Donglai Zhu, Haizhou Li, Bin Ma, Chin-Hui Lee: Optimizing the Performance of Spoken Language Recognition With Discriminative Training. IEEE Transactions on Audio, Speech & Language Processing 16(8): 1642-1653 (2008)
72		Xiaolin Wu, Bin Ma, Nima Sarshar: Rainbow Network Flow of Multiple Description Codes. IEEE Transactions on Information Theory 54(10): 4565-4574 (2008)
71		Baozhen Shan, Bin Ma, Kaizhong Zhang, Gilles Lajoie: Complexities and Algorithms for Glycan Sequencing Using Tandem Mass Spectrometry. J. Bioinformatics and Computational Biology 6(1): 77-91 (2008)
70		Bin Ma, Lei Xin, Kaizhong Zhang: A new quartet approach for reconstructing phylogenetic trees: quartet joining method. J. Comb. Optim. 16(3): 293-306 (2008)
	2007
69		Bin Ma, Kaizhong Zhang: Combinatorial Pattern Matching, 18th Annual Symposium, CPM 2007, London, Canada, July 9-11, 2007, Proceedings Springer 2007
68		Baozhen Shan, Bin Ma, Kaizhong Zhang, Gilles Lajoie: Complexities and Algorithms for Glycan Structure Sequencing using Tandem Mass Spectrometry. APBC 2007: 297-306
67		Shihyen Chen, Bin Ma, Kaizhong Zhang: The Normalized Similarity Metric and Its Applications. BIBM 2007: 172-180
66		Chin-Wei Eugene Koh, Hanwu Sun, Tin Lay Nwe, Trung Hieu Nguyen, Bin Ma, Chng Eng Siong, Haizhou Li, Susanto Rahardja: Speaker Diarization Using Direction of Arrival Estimate and Acoustic Feature Information: The I2R-NTU Submission for the NIST RT 2007 Evaluation. CLEAR 2007: 484-496
65		Lei Xin, Bin Ma, Kaizhong Zhang: A New Quartet Approach for Reconstructing Phylogenetic Trees: Quartet Joining Method. COCOON 2007: 40-50
64		Miklós Csürös, Bin Ma: Rapid Homology Search with Neighbor Seeds. Algorithmica 48(2): 187-202 (2007)
63		Sriram Chellappan, Wenjun Gu, Xiaole Bai, Dong Xuan, Bin Ma, Kaizhong Zhang: Deploying Wireless Sensor Networks under Limited Mobility Constraints. IEEE Trans. Mob. Comput. 6(10): 1142-1157 (2007)
62		Sriram Chellappan, Xiaole Bai, Bin Ma, Dong Xuan, Changqing Xu: Mobility Limited Flip-Based Sensor Networks Deployment. IEEE Trans. Parallel Distrib. Syst. 18(2): 199-211 (2007)
61		Haizhou Li, Bin Ma, Chin-Hui Lee: A Vector Space Modeling Approach to Spoken Language Identification. IEEE Transactions on Audio, Speech & Language Processing 15(1): 271-284 (2007)
60		Bin Ma, Haizhou Li, Rong Tong: Spoken Language Recognition Using Ensemble Classifiers. IEEE Transactions on Audio, Speech & Language Processing 15(7): 2053-2062 (2007)
59		Bin Ma, Lusheng Wang, Ming Li: Near optimal multiple alignment within a band in polynomial time. J. Comput. Syst. Sci. 73(6): 997-1011 (2007)
58		Bin Ma, Ming Li: On the complexity of the spaced seeds. J. Comput. Syst. Sci. 73(7): 1024-1034 (2007)
	2006
57		Qiang Huo, Bin Ma, Chng Eng Siong, Haizhou Li: Chinese Spoken Language Processing, 5th International Symposium, ISCSLP 2006, Singapore, December 13-16, 2006, Proceedings Springer 2006
56		Kong-Aik Lee, Hanwu Sun, Rong Tong, Bin Ma, Minghui Dong, Changhuai You, Donglai Zhu, Chin-Wei Eugene Koh, Lei Wang, Tomi Kinnunen, Chng Eng Siong, Haizhou Li: The IIR Submission to CSLP 2006 Speaker Recognition Evaluation. ISCSLP 2006: 494-505
55		Rong Tong, Bin Ma, Kong-Aik Lee, Changhuai You, Donglai Zhu, Tomi Kinnunen, Hanwu Sun, Minghui Dong, Chng Eng Siong, Haizhou Li: Fusion of Acoustic and Tokenization Features for Speaker Recognition. ISCSLP 2006: 566-577
54		Ming Li, Bin Ma, Louxin Zhang: Superiority and complexity of the spaced seeds. SODA 2006: 444-453
53		Jian Liu, Bin Ma, Ming Li: Prima: Peptide Robust Identification from Ms/ms Spectra. J. Bioinformatics and Computational Biology 4(1): 125-138 (2006)
52		Bin Ma, Lieyu Wu, Kaizhong Zhang: Improving the Sensitivity and Specificity of Protein Homology Search by Incorporating Predicted Secondary Structures. J. Bioinformatics and Computational Biology 4(3): 709-720 (2006)
51		Jinbo Xu, Daniel G. Brown, Ming Li, Bin Ma: Optimizing Multiple Spaced Seeds for Homology Search. Journal of Computational Biology 13(7): 1355-1368 (2006)
	2005
50		Haizhou Li, Bin Ma: A Phonotactic Language Model for Spoken Language Identification. ACL 2005
49		Jian Liu, Bin Ma, Ming Li: PRIME: Peptide robust identification from MS/MS spectra. APBC 2005: 181-190
48		Miklós Csürös, Bin Ma: Rapid Homology Search with Two-Stage Extension and Daughter Seeds. COCOON 2005: 104-114
47		Bin Ma, Kaizhong Zhang: On the Longest Common Rigid Subsequence Problem. CPM 2005: 11-20
46		Bin Ma, Lieyu Wu, Kaizhong Zhang: Improving the Sensitivity and Specificity of Protein Homology Search by Incorporating Predicted Secondary Structures. International Conference on Computational Science (2) 2005: 960-967
45		Bin Ma, Haizhou Li: A phonotactic-semantic paradigm for automatic spoken document classification. SIGIR 2005: 369-376
44		Derek Kisman, Ming Li, Bin Ma, Li Wang: tPatternHunter: gapped, fast and sensitive translated homology search . Bioinformatics 21(4): 542-544 (2005)
43		Yonghua Han, Bin Ma, Kaizhong Zhang: An automata approach to match gapped sequence tags against protein database. Int. J. Found. Comput. Sci. 16(3): 487-497 (2005)
42		Yonghua Han, Bin Ma, Kaizhong Zhang: Spider: Software for Protein Identification from Sequence Tags with de Novo Sequencing Error. J. Bioinformatics and Computational Biology 3(3): 697-716 (2005)
41		Bin Ma, Kaizhong Zhang, Chengzhi Liang: An effective algorithm for peptide de novo sequencing from MS/MS spectra. J. Comput. Syst. Sci. 70(3): 418-430 (2005)
	2004
40		Xiaolong Yang, Qianbin Chen, Youju Mao, Keping Long, Bin Ma: Mobility Prediction-Based Wireless Resource Allocation and Reservation. AWCC 2004: 1-11
39		Yonghua Han, Bin Ma, Kaizhong Zhang: An Automata Approach to Match Gapped Sequence Tags Against Protein Database. CIAA 2004: 167-177
38		Jinbo Xu, Daniel G. Brown, Ming Li, Bin Ma: Optimizing Multiple Spaced Seeds for Homology Search. CPM 2004: 47-58
37		Yonghua Han, Bin Ma, Kaizhong Zhang: SPIDER: Software for Protein Identification from Sequence Tags with De Novo Sequencing Error. CSB 2004: 206-215
36		Uri Keich, Ming Li, Bin Ma, John Tromp: On spaced seeds for similarity search. Discrete Applied Mathematics 138(3): 253-263 (2004)
35		Ming Li, Xin Chen, Xin Li, Bin Ma, Paul M. B. Vitányi: The similarity metric. IEEE Transactions on Information Theory 50(12): 3250-3264 (2004)
34		Ming Li, Bin Ma, Derek Kisman, John Tromp: Patternhunter Ii: Highly Sensitive and Fast Homology Search. J. Bioinformatics and Computational Biology 2(3): 417-440 (2004)
33		Daniel G. Brown, Ming Li, Bin Ma: A Tutorial of Recent Developments in the Seeding of Local Alignment. J. Bioinformatics and Computational Biology 2(4): 819-842 (2004)
32		Tao Jiang, Guohui Lin, Bin Ma, Kaizhong Zhang: The longest common subsequence problem for arc-annotated sequences. J. Discrete Algorithms 2(2): 257-270 (2004)
	2003
31		Bin Ma, Zhuozhi Wang, Kaizhong Zhang: Alignment between Two Multiple Alignments. CPM 2003: 254-265
30		Bin Ma, Kaizhong Zhang, Chengzhi Liang: An Effective Algorithm for the Peptide De Novo Sequencing from MS/MS Spectrum. CPM 2003: 266-277
29		Ming Li, Xin Chen, Xin Li, Bin Ma, Paul M. B. Vitányi: The similarity metric. SODA 2003: 863-872
28		Louxin Zhang, Bin Ma, Lusheng Wang, Ying Xu: Greedy method for inferring tandem duplication history. Bioinformatics 19(12): 1497-1504 (2003)
27		J. Kevin Lanctot, Ming Li, Bin Ma, Shaojiu Wang, Louxin Zhang: Distinguishing string selection problems. Inf. Comput. 185(1): 41-55 (2003)
26		Xiaotie Deng, Guojun Li, Zimao Li, Bin Ma, Lusheng Wang: Genetic Design of Drugs Without Side-Effects. SIAM J. Comput. 32(4): 1073-1090 (2003)
	2002
25		Xiaotie Deng, Guojun Li, Zimao Li, Bin Ma, Lusheng Wang: A PTAS for Distinguishing (Sub)string Selection. ICALP 2002: 740-751
24		Louxin Zhang, Bin Ma, Lusheng Wang: Efficient Methods for Inferring Tandem Duplication History. WABI 2002: 97-111
23		Xin Chen, Ming Li, Bin Ma, John Tromp: DNACompress: fast and effective DNA sequence compression. Bioinformatics 18(12): 1696-1698 (2002)
22		Bin Ma, John Tromp, Ming Li: PatternHunter: faster and more sensitive homology search. Bioinformatics 18(3): 440-445 (2002)
21		Ming Li, Bin Ma, Lusheng Wang: On the closest string and substring problems. J. ACM 49(2): 157-171 (2002)
20		Ming Li, Bin Ma, Lusheng Wang: Finding Similar Regions in Many Sequences. J. Comput. Syst. Sci. 65(1): 73-96 (2002)
19		Deep Jaitly, Paul E. Kearney, Guo-Hui Lin, Bin Ma: Methods for reconstructing the history of tandem repeats and their application to the human genome. J. Comput. Syst. Sci. 65(3): 494-507 (2002)
18		Tao Jiang, Guohui Lin, Bin Ma, Kaizhong Zhang: A General Edit Distance between RNA Structures. Journal of Computational Biology 9(2): 371-388 (2002)
17		Bin Ma, Qiong Wu: Parametric study of repeatable gait for a planar five-link biped. Robotica 20(5): 493-498 (2002)
16		Bin Ma, Lusheng Wang, Kaizhong Zhang: Computing similarity between RNA structures. Theor. Comput. Sci. 276(1-2): 111-132 (2002)
	2001
15		Guohui Lin, Bin Ma, Kaizhong Zhang: Edit distance between two RNA structures. RECOMB 2001: 211-220
14		Ming Li, Xin Chen, Xin Li, Bin Ma, Paul M. B. Vitányi: The similarity metric CoRR cs.CC/0111054: (2001)
	2000
13		Tao Jiang, Guohui Lin, Bin Ma, Kaizhong Zhang: The Longest Common Subsequence Problem for Arc-Annotated Sequences. CPM 2000: 154-165
12		Bin Ma: A Polynominal Time Approximation Scheme for the Closest Substring Problem. CPM 2000: 99-107
11		Ming Li, Bin Ma, Lusheng Wang: Near optimal multiple alignment within a band in polynomial time. STOC 2000: 425-434
10		Ming Li, Bin Ma, Lusheng Wang: On The Closest String and Substring Problems CoRR cs.CE/0002012: (2000)
9		Lusheng Wang, Bin Ma, Ming Li: Fixed topology alignment with recombination. Discrete Applied Mathematics 104(1-3): 281-300 (2000)
8		Bin Ma, Lusheng Wang: On the Inapproximability of Disjoint Paths and Minimum Steiner Forest with Bandwidth Constraints. J. Comput. Syst. Sci. 60(1): 1-12 (2000)
7		Bin Ma, Ming Li, Louxin Zhang: From Gene Trees to Species Trees. SIAM J. Comput. 30(3): 729-752 (2000)
	1999
6		Kaizhong Zhang, Lusheng Wang, Bin Ma: Computing Similarity between RNA Structures. CPM 1999: 281-293
5		J. Kevin Lanctot, Ming Li, Bin Ma, Shaojiu Wang, Louxin Zhang: Distinguishing String Selection Problems. SODA 1999: 633-642
4		Ming Li, Bin Ma, Lusheng Wang: Finding Similar Regions in Many Strings. STOC 1999: 473-482
3		Bin Ma, Lusheng Wang, Louxin Zhang: Fitting Distances by Tree Metrics with Increment Error. J. Comb. Optim. 3(2-3): 213-225 (1999)
	1998
2		Bin Ma, Lusheng Wang, Ming Li: Fixed Topology Alignment with Recombination. CPM 1998: 174-188
1		Bin Ma, Ming Li, Louxin Zhang: On reconstructing species trees from gene trees in term of duplications and losses. RECOMB 1998: 182-191

Coauthor Index

1	Xiaole Bai	[62] [63] [82]
2	Daniel G. Brown	[33] [38] [51]
3	Sriram Chellappan	[62] [63] [82]
4	Qianbin Chen	[40]
5	Shihyen Chen	[67] [83]
6	Xin Chen	[14] [23] [29] [35]
7	Miklós Csürös	[48] [64]
8	Omid Dehzangi	[77]
9	Xiaotie Deng	[25] [26]
10	Minghui Dong	[55] [56]
11	Wenjun Gu	[63] [82]
12	Yonghua Han	[37] [39] [42] [43] [85]
13	Chia-Hsin Hsieh	[78]
14	Chien-Lin Huang	[78]
15	Minlie Huang	[86]
16	Qiang Huo	[57]
17	Deep Jaitly	[19]
18	Tao Jiang	[13] [18] [32]
19	Paul E. Kearney	[19]
20	Uri Keich	[36]
21	Tomi Kinnunen	[55] [56]
22	Derek Kisman	[34] [44]
23	Chin-Wei Eugene Koh	[56] [66]
24	Gilles Lajoie	[68] [71]
25	J. Kevin Lanctot	[5] [27]
26	Chin-Hui Lee	[61] [73]
27	Kong-Aik Lee	[55] [56]
28	Guojun Li	[25] [26]
29	Haizhou Li	[45] [50] [55] [56] [57] [60] [61] [66] [73] [77] [78]
30	Ming Li	[1] [2] [4] [5] [7] [9] [10] [11] [14] [20] [21] [22] [23] [27] [29] [33] [34] [35] [36] [38] [44] [49] [51] [53] [54] [58] [59] [74] [80] [86]
31	Weiming Li	[87]
32	Xin Li	[14] [29] [35]
33	Zimao Li	[25] [26]
34	Chengzhi Liang	[30] [41]
35	Guohui Lin (Guo-Hui Lin)	[13] [15] [18] [19] [32]
36	Hao Lin	[74]
37	Jian Liu	[49] [53]
38	Xiaowen Liu	[85]
39	Chong Long	[80] [86]
40	Keping Long	[40]
41	Youju Mao	[40]
42	Trung Hieu Nguyen	[66]
43	Tin Lay Nwe	[66]
44	Susanto Rahardja	[66]
45	Nima Sarshar	[72]
46	Baozhen Shan	[68] [71]
47	Chng Eng Siong (Engsiong Chng)	[55] [56] [57] [66] [77]
48	Hanwu Sun	[55] [56] [66]
49	Xiaoming Sun	[76]
50	Rong Tong	[55] [56] [60]
51	John Tromp	[22] [23] [34] [36]
52	Paul M. B. Vitányi	[14] [29] [35]
53	Lei Wang	[56]
54	Li Wang	[44]
55	Lusheng Wang	[2] [3] [4] [6] [8] [9] [10] [11] [16] [20] [21] [24] [25] [26] [28] [59]
56	Shaojiu Wang	[5] [27]
57	Xun Wang	[82]
58	Zhuozhi Wang	[31]
59	Chung-Hsien Wu	[78]
60	Lieyu Wu	[46] [52]
61	Qiong Wu	[17]
62	Xiaolin Wu	[72]
63	Lei Xin	[65] [70]
64	Changqing Xu	[62]
65	Jinbo Xu	[38] [51]
66	Ying Xu	[28]
67	Dong Xuan	[62] [63] [82]
68	Xiaolong Yang	[40]
69	Hongyi Yao	[81] [84]
70	Changhuai You	[55] [56]
71	Denis Yuen	[85]
72	Jie Zhang	[86]
73	Kaizhong Zhang	[6] [13] [15] [16] [18] [30] [31] [32] [37] [39] [41] [42] [43] [46] [47] [52] [63] [65] [67] [68] [69] [70] [71] [83] [87]
74	Louxin Zhang	[1] [3] [5] [7] [24] [27] [28] [54]
75	Michael Q. Zhang	[74]
76	Zefeng Zhang	[74]
77	Donglai Zhu	[55] [56] [73]
78	Xiaoyan Zhu	[80] [86]

Colors in the list of coauthors