Bernard M. E. Moret

	2009
78		Nicholas D. Pattengale, Masoud Alipour, Olaf R. P. Bininda-Emonds, Bernard M. E. Moret, Alexandros Stamatakis: How Many Bootstrap Replicates Are Necessary?. RECOMB 2009: 184-200
77		Krister M. Swenson, Vaibhav Rajan, Yu Lin, Bernard M. E. Moret: Sorting Signed Permutations by Inversions in O(nlogn) Time. RECOMB 2009: 386-399
76		Xiuwei Zhang, Bernard M. E. Moret: Improving Inference of Transcriptional Regulatory Networks Based on Network Evolutionary Models. WABI 2009: 415-428
75		Krister M. Swenson, Bernard M. E. Moret: Inversion-based genomic signatures. BMC Bioinformatics 10(S-1): (2009)
74		Krister M. Swenson, Yokuki To, Jijun Tang, Bernard M. E. Moret: Maximum independent sets of commuting and noninterfering inversions. BMC Bioinformatics 10(S-1): (2009)
	2008
73		Krister M. Swenson, William Arndt, Jijun Tang, Bernard M. E. Moret: Phylogenetic Reconstruction from Complete Gene Orders of Whole Genomes. APBC 2008: 241-250
72		Xiuwei Zhang, Maryam Zaheri, Bernard M. E. Moret: Using Phylogenetic Relationships to Improve the Inference of Transcriptional Regulatory Networks. BMEI (1) 2008: 186-193
71		Yu Lin, Bernard M. E. Moret: Estimating true evolutionary distances under the DCJ model. ISMB 2008: 114-122
70		Michael Brudno, Bernard M. E. Moret, C. Randal Linder, Tandy Warnow: Session Introduction. Pacific Symposium on Biocomputing 2008: 1-2
69		Krister M. Swenson, Yu Lin, Vaibhav Rajan, Bernard M. E. Moret: Hurdles Hardly Have to Be Heeded. RECOMB-CG 2008: 241-251
68		Xiuwei Zhang, Bernard M. E. Moret: Boosting the Performance of Inference Algorithms for Transcriptional Regulatory Networks Using a Phylogenetic Approach. WABI 2008: 245-258
67		Krister M. Swenson, Mark Marron, Joel V. Earnest-DeYoung, Bernard M. E. Moret: Approximating the true evolutionary distance between two genomes. ACM Journal of Experimental Algorithmics 12: (2008)
	2007
66		Moulik Kothari, Bernard M. E. Moret: An Experimental Evaluation of Inversion-and Transposition-Based Genomic Distances through Simulations. CIBCB 2007: 151-158
65		Nicholas D. Pattengale, Eric J. Gottlieb, Bernard M. E. Moret: Efficiently Computing the Robinson-Foulds Metric. Journal of Computational Biology 14(6): 724-735 (2007)
	2006
64		Philipp Bucher, Bernard M. E. Moret: Algorithms in Bioinformatics, 6th International Workshop, WABI 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings Springer 2006
63		Liying Cui, Feng Yue, Claude W. dePamphilis, Bernard M. E. Moret, Jijun Tang: Inferring Ancestral Chloroplast Genomes with Inverted Repea. BIOCOMP 2006: 75-81
62		Nicholas D. Pattengale, Bernard M. E. Moret: A Sublinear-Time Randomized Approximation Scheme for the Robinson-Foulds Metric. RECOMB 2006: 221-230
61		M. M. Morin, Bernard M. E. Moret: NetGen: generating phylogenetic networks with diploid hybrids. Bioinformatics 22(15): 1921-1923 (2006)
	2005
60		Krister M. Swenson, Mark Marron, Joel V. Earnest-DeYoung, Bernard M. E. Moret: Approximating the True Evolutionary Distance between Two Genomes. ALENEX/ANALCO 2005: 121-129
59		Bernard M. E. Moret: Computational Challenges from the Tree of Life. ALENEX/ANALCO 2005: 3-16
58		Tao Liu, Jijun Tang, Bernard M. E. Moret: Quartet-Based Phylogeny Reconstruction from Gene Orders. COCOON 2005: 63-73
57		Jijun Tang, Bernard M. E. Moret: Linear Programming for Phylogenetic Reconstruction Based on Gene Rearrangements. CPM 2005: 406-416
56		Nicholas D. Pattengale, Bernard M. E. Moret: Phylogenetic Postprocessing. CSB Workshops 2005: 57-58
55		Krister M. Swenson, Nicholas D. Pattengale, Bernard M. E. Moret: A Framework for Orthology Assignment from Gene Rearrangement Data. Comparative Genomics 2005: 153-166
	2004
54		Jijun Tang, Bernard M. E. Moret, Liying Cui, Claude W. dePamphilis: Phylogenetic Reconstruction from Arbitrary Gene-Order Data. BIBE 2004: 592-599
53		Usman Roshan, Bernard M. E. Moret, Tandy Warnow, Tiffani L. Williams: Rec-I-DCM3: A Fast Algorithmic Technique for Reconstructing Large Phylogenetic Trees. CSB 2004: 98-109
52		Joel V. Earnest-DeYoung, Emmanuelle Lerat, Bernard M. E. Moret: Reversing Gene Erosion - Reconstructing Ancestral Bacterial Genomes from Gene-Content and Order Data. WABI 2004: 1-13
51		Bernard M. E. Moret, Luay Nakhleh, Tandy Warnow, C. Randal Linder, Anna Tholse, Anneke Padolina, Jerry Sun, Ruth E. Timme: Phylogenetic Networks: Modeling, Reconstructibility, and Accuracy. IEEE/ACM Trans. Comput. Biology Bioinform. 1(1): 13-23 (2004)
50		Mark Marron, Krister M. Swenson, Bernard M. E. Moret: Genomic Distances under Deletions and Insertions. Theor. Comput. Sci. 325(3): 347-360 (2004)
	2003
49		Tiffani L. Williams, Bernard M. E. Moret: An Investigation of Phylogenetic Likelihood Methods. BIBE 2003: 79-86
48		Mark Marron, Krister M. Swenson, Bernard M. E. Moret: Genomic Distances under Deletions and Insertions. COCOON 2003: 537-547
47		Jijun Tang, Bernard M. E. Moret: Scaling up accurate phylogenetic reconstruction from gene-order data. ISMB (Supplement of Bioinformatics) 2003: 305-312
46		Luay Nakhleh, Jerry Sun, Tandy Warnow, C. Randal Linder, Bernard M. E. Moret, Anna Tholse: Towards the Development of Computational Tools for Evaluating Phylogenetic Network Reconstruction Methods. Pacific Symposium on Biocomputing 2003: 315-326
45		Jijun Tang, Bernard M. E. Moret: Phylogenetic Reconstruction from Gene-Rearrangement Data with Unequal Gene Content. WADS 2003: 37-46
44		Katherine St. John, Tandy Warnow, Bernard M. E. Moret, Lisa Vawter: Performance study of phylogenetic methods: (unweighted) quartet methods and neighbor-joining. J. Algorithms 48(1): 173-193 (2003)
	2002
43		Rudolf Fleischer, Bernard M. E. Moret, Erik Meineche Schmidt: Experimental Algorithmics, From Algorithm Design to Robust and Efficient Software [Dagstuhl seminar, September 2000] Springer 2002
42		Luay Nakhleh, Bernard M. E. Moret, Usman Roshan, Katherine St. John, Jerry Sun, Tandy Warnow: The Accuracy of Fast Phylogenetic Methods for Large Datasets. Pacific Symposium on Biocomputing 2002: 211-222
41		Li-San Wang, Robert K. Jansen, Bernard M. E. Moret, Linda A. Raubeson, Tandy Warnow: Fast Phylogenetic Methods for the Analysis of Genome Rearrangement Data: An Empirical Study. Pacific Symposium on Biocomputing 2002: 524-535
40		Bernard M. E. Moret, Usman Roshan, Tandy Warnow: Sequence-Length Requirements for Phylogenetic Methods. WABI 2002: 343-356
39		Bernard M. E. Moret, Adam C. Siepel, Jijun Tang, Tao Liu: Inversion Medians Outperform Breakpoint Medians in Phylogeny Reconstruction from Gene-Order Data. WABI 2002: 521-536
38		Bernard M. E. Moret, Li-San Wang, Tandy Warnow: Toward New Software for Computational Phylogenetics. IEEE Computer 35(7): 55-64 (2002)
37		Srinivas Doddi, Madhav V. Marathe, Bernard M. E. Moret: Point Set Labeling with Specified Positions. Int. J. Comput. Geometry Appl. 12(1-2): 29-66 (2002)
36		Bernard M. E. Moret, Jijun Tang, Li-San Wang, Tandy Warnow: Steps toward accurate reconstructions of phylogenies from gene-order data. J. Comput. Syst. Sci. 65(3): 508-525 (2002)
35		Bernard M. E. Moret, David A. Bader, Tandy Warnow: High-Performance Algorithm Engineering for Computational Phylogenetics. The Journal of Supercomputing 22(1): 99-111 (2002)
	2001
34		Olivier Gascuel, Bernard M. E. Moret: Algorithms in Bioinformatics, First International Workshop, WABI 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings Springer 2001
33		David A. Bader, Ajith K. Illendula, Bernard M. E. Moret, Nina R. Weisse-Bernstein: Using PRAM Algorithms on a Uniform-Memory-Access Shared-Memory Architecture. Algorithm Engineering 2001: 129-144
32		Bernard M. E. Moret, Li-San Wang, Tandy Warnow, Stacia K. Wyman: New approaches for reconstructing phylogenies from gene order data. ISMB (Supplement of Bioinformatics) 2001: 165-173
31		Bernard M. E. Moret, David A. Bader, Tandy Warnow: High-Performance Algorithm Engineering for Computational Phylogenetics. International Conference on Computational Science (2) 2001: 1012-1021
30		Bernard M. E. Moret, Stacia K. Wyman, David A. Bader, Tandy Warnow, Mi Yan: A New Implmentation and Detailed Study of Breakpoint Analysis. Pacific Symposium on Biocomputing 2001: 583-594
29		Tandy Warnow, Bernard M. E. Moret, Katherine St. John: Absolute convergence: true trees from short sequences. SODA 2001: 186-195
28		Katherine St. John, Tandy Warnow, Bernard M. E. Moret, Lisa Vawter: Performance study of phylogenetic methods: (unweighted) quartet methods and neighbor-joining. SODA 2001: 196-205
27		Adam C. Siepel, Bernard M. E. Moret: Finding an Optimal Inversion Median: Experimental Results. WABI 2001: 189-203
26		David A. Bader, Bernard M. E. Moret, Mi Yan: A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study. WADS 2001: 365-376
25		Bernard M. E. Moret: Foreword. J. Algorithms 38(1): 1 (2001)
24		Bernard M. E. Moret, Henry D. Shapiro: Algorithms and Experiments: The New (and Old) Methodology. J. UCS 7(5): 434-446 (2001)
23		David A. Bader, Bernard M. E. Moret, Mi Yan: A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study. Journal of Computational Biology 8(5): 483-491 (2001)
	2000
22		David A. Bader, Bernard M. E. Moret, Peter Sanders: Algorithm Engineering for Parallel Computation. Experimental Algorithmics 2000: 1-23
21		Bernard M. E. Moret, Tandy Warnow: Reconstructing Optimal Phylogenetic Trees: A Challenge in Experimental Algorithmics. Experimental Algorithmics 2000: 163-180
20		Mary E. Cosner, Robert K. Jansen, Bernard M. E. Moret, Linda A. Raubeson, Li-San Wang, Tandy Warnow, Stacia K. Wyman: A New Fast Heuristic for Computing the Breakpoint Phylogeny and Experimental Phylogenetic Analyses of Real and Synthetic Data. ISMB 2000: 104-115
19		Srinivas Doddi, Madhav V. Marathe, Bernard M. E. Moret: Point set labeling with specified positions. Symposium on Computational Geometry 2000: 182-190
	1999
18		Andrew V. Goldberg, Bernard M. E. Moret: Combinatorial Algorithms Test Sets [CATS]: The ACM/EATCS Platform for Experimental Research. SODA 1999: 913-914
17		Gregory L. Heileman, Chaouki T. Abdallah, Bernard M. E. Moret, Bradley J. Smith: Dynamical System Representation of Open Address Hash Functions. SODA 1999: 919-920
	1998
16		Michael J. Collins, Bernard M. E. Moret: Improved Lower Bounds for the Link Length of Rectilinear Spanning Paths in Grids. Inf. Process. Lett. 68(6): 317-319 (1998)
	1997
15		Srinivas Doddi, Madhav V. Marathe, Andy Mirzaian, Bernard M. E. Moret, Binhai Zhu: Map Labeling and Its Generalizations. SODA 1997: 148-157
	1995
14		Ali A. Kooshesh, Bernard M. E. Moret: Folding a Simple Polygon: A Paradigm for Computational Geometry. ACM Conference on Computer Science 1995: 114-118
13		Zhiqiang Chen, Andrew T. Holle, Bernard M. E. Moret, Jared Saia, Ali Boroujerdi: Network Routing Models Applied to Aircraft Routing Problems. Winter Simulation Conference 1995: 1200-1206
	1993
12		Paul Helman, Bernard M. E. Moret, Henry D. Shapiro: An Exact Characterization of Greedy Structures. SIAM J. Discrete Math. 6(2): 274-283 (1993)
	1992
11		Paul Helman, Bernard M. E. Moret, Henry D. Shapiro: An Exact Characterization of Greedy Structures. IPCO 1992: 287-297
10		Ali A. Kooshesh, Bernard M. E. Moret: Three-coloring the vertices of a triangulated simple polygon. Pattern Recognition 25(4): 443- (1992)
	1991
9		Ali A. Kooshesh, Bernard M. E. Moret: Folding a Triangulated Simple Polygon: Structural and Algorithmic Results. ICCI 1991: 102-110
8		Bernard M. E. Moret, Henry D. Shapiro: How to Find a Minimum Spanning Tree in Practice. New Results and New Trends in Computer Science 1991: 192-203
7		Bernard M. E. Moret, Henry D. Shapiro: An Emperical Analysis of Algorithms for Constructing a Minimum Spanning Tree. WADS 1991: 400-411
6		Karl R. Abrahamson, Michael R. Fellows, Michael A. Langston, Bernard M. E. Moret: Constructive complexity. Discrete Applied Mathematics 34(1-3): 3-16 (1991)
	1990
5		Chea-Tin (Tim) Tseng, Bernard M. E. Moret: A new method for one-dimensional linear feature transformations. Pattern Recognition 23(7): 745-752 (1990)
	1983
4		Michael J. Mathey, Bernard M. E. Moret: The Computational Metaphor and Quantum Physics. Commun. ACM 26(2): 137-145 (1983)
3		Bernard M. E. Moret, Michael G. Thomason, Rafael C. Gonzalez: Symmetric and Threshold Boolean Functions Are Exhaustive. IEEE Trans. Computers 32(12): 1211-1212 (1983)
	1982
2		Bernard M. E. Moret: Decision Trees and Diagrams. ACM Comput. Surv. 14(4): 593-623 (1982)
	1980
1		Bernard M. E. Moret, Michael G. Thomason, Rafael C. Gonzalez: The Activity of a Variable and Its Relation to Decision Trees. ACM Trans. Program. Lang. Syst. 2(4): 580-595 (1980)

Coauthor Index

1	Chaouki T. Abdallah	[17]
2	Karl R. Abrahamson	[6]
3	Masoud Alipour	[78]
4	William Arndt	[73]
5	David A. Bader	[22] [23] [26] [30] [31] [33] [35]
6	Olaf R. P. Bininda-Emonds	[78]
7	Ali Boroujerdi	[13]
8	Michael Brudno	[70]
9	Philipp Bucher	[64]
10	Zhiqiang Chen	[13]
11	Michael J. Collins	[16]
12	Mary E. Cosner	[20]
13	Liying Cui	[54] [63]
14	Srinivas Doddi	[15] [19] [37]
15	Joel V. Earnest-DeYoung	[52] [60] [67]
16	Michael R. Fellows (Mike Fellows)	[6]
17	Rudolf Fleischer	[43]
18	Olivier Gascuel	[34]
19	Andrew V. Goldberg	[18]
20	Rafael C. Gonzalez	[1] [3]
21	Eric J. Gottlieb	[65]
22	Gregory L. Heileman	[17]
23	Paul Helman	[11] [12]
24	Andrew T. Holle	[13]
25	Ajith K. Illendula	[33]
26	Robert K. Jansen	[20] [41]
27	Katherine St. John	[28] [29] [42] [44]
28	Ali A. Kooshesh	[9] [10] [14]
29	Moulik Kothari	[66]
30	Michael A. Langston	[6]
31	Emmanuelle Lerat	[52]
32	Yu Lin	[69] [71] [77]
33	C. Randal Linder	[46] [51] [70]
34	Tao Liu	[39] [58]
35	Madhav V. Marathe	[15] [19] [37]
36	Mark Marron	[48] [50] [60] [67]
37	Michael J. Mathey	[4]
38	Andranik Mirzaian (Andy Mirzaian)	[15]
39	M. M. Morin	[61]
40	Luay Nakhleh	[42] [46] [51]
41	Anneke Padolina	[51]
42	Nicholas D. Pattengale	[55] [56] [62] [65] [78]
43	Vaibhav Rajan	[69] [77]
44	Linda A. Raubeson	[20] [41]
45	Usman Roshan	[40] [42] [53]
46	Jared Saia	[13]
47	Peter Sanders	[22]
48	Erik Meineche Schmidt	[43]
49	Henry D. Shapiro	[7] [8] [11] [12] [24]
50	Adam C. Siepel	[27] [39]
51	Bradley J. Smith	[17]
52	Alexandros Stamatakis	[78]
53	Jerry Sun	[42] [46] [51]
54	Krister M. Swenson	[48] [50] [55] [60] [67] [69] [73] [74] [75] [77]
55	Jijun Tang	[36] [39] [45] [47] [54] [57] [58] [63] [73] [74]
56	Anna Tholse	[46] [51]
57	Michael G. Thomason	[1] [3]
58	Ruth E. Timme	[51]
59	Yokuki To	[74]
60	Chea-Tin (Tim) Tseng	[5]
61	Lisa Vawter	[28] [44]
62	Li-San Wang	[20] [32] [36] [38] [41]
63	Tandy Warnow	[20] [21] [28] [29] [30] [31] [32] [35] [36] [38] [40] [41] [42] [44] [46] [51] [53] [70]
64	Nina R. Weisse-Bernstein	[33]
65	Tiffani L. Williams	[49] [53]
66	Stacia K. Wyman	[20] [30] [32]
67	Mi Yan	[23] [26] [30]
68	Feng Yue	[63]
69	Maryam Zaheri	[72]
70	Xiuwei Zhang	[68] [72] [76]
71	Binhai Zhu	[15]
72	Claude W. dePamphilis	[54] [63]

Colors in the list of coauthors