Burkhard Morgenstern

	2009
47		Fabian Schreiber, Kerstin Pick, Dirk Erpenbeck, Gert Wörheide, Burkhard Morgenstern: OrthoSelect: a protocol for selecting orthologous groups in phylogenomics. BMC Bioinformatics 10: (2009)
46		Dietmar Sommerfeld, Thomas Lingner, Mario Stanke, Burkhard Morgenstern, Harald Richter: AUGUSTUS at MediGRID: Adaption of a bioinformatics application to grid computing for efficient genome analysis. Future Generation Comp. Syst. 25(3): 337-345 (2009)
45		Fabian Schreiber, Gert Wörheide, Burkhard Morgenstern: OrthoSelect: a web server for selecting orthologous gene alignments from EST sequences. Nucleic Acids Research 37(Web-Server-Issue): 185-188 (2009)
44		Anne-Kathrin Schultz, Ming Zhang, Ingo Bulla, Thomas Leitner, Bette Korber, Burkhard Morgenstern, Mario Stanke: jpHMM: Improving the reliability of recombination prediction in HIV-1. Nucleic Acids Research 37(Web-Server-Issue): 647-651 (2009)
	2008
43		Amarendran R. Subramanian, Michael Kaufmann, Burkhard Morgenstern: DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment. Algorithms for Molecular Biology 3: (2008)
42		Peter Meinicke, Thomas Lingner, Alexander Kaever, Kirstin Feussner, Cornelia Göbel, Ivo Feussner, Petr Karlovsky, Burkhard Morgenstern: Metabolite-based clustering and visualization of mass spectrometry data using one-dimensional self-organizing maps. Algorithms for Molecular Biology 3: (2008)
41		Holger Wagner, Burkhard Morgenstern, Andreas W. M. Dress: Stability of multiple alignments and phylogenetic trees: an analysis of ABC-transporter proteins family. Algorithms for Molecular Biology 3: (2008)
40		Katharina J. Hoff, Maike Tech, Thomas Lingner, Rolf Daniel, Burkhard Morgenstern, Peter Meinicke: Gene prediction in metagenomic fragments: A large scale machine learning approach. BMC Bioinformatics 9: (2008)
	2006
39		Burkhard Morgenstern, Sonja J. Prohaska, Dirk Pöhler, Peter F. Stadler: Multiple sequence alignment with user-defined anchor points. Algorithms for Molecular Biology 1: (2006)
38		Burkhard Morgenstern, Peter F. Stadler: New journal: Algorithms for Molecular Biology. Algorithms for Molecular Biology 1: (2006)
37		Anne-Kathrin Schultz, Ming Zhang, Thomas Leitner, Carla Kuiken, Bette Korber, Burkhard Morgenstern, Mario Stanke: A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes. BMC Bioinformatics 7: 265 (2006)
36		Mario Stanke, Oliver Schöffmann, Burkhard Morgenstern, Stephan Waack: Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources. BMC Bioinformatics 7: 62 (2006)
35		Mario Stanke, Oliver Keller, Irfan Gunduz, Alec Hayes, Stephan Waack, Burkhard Morgenstern: AUGUSTUS: ab initio prediction of alternative transcripts. Nucleic Acids Research 34(Web-Server-Issue): 435-439 (2006)
34		Ming Zhang, Anne-Kathrin Schultz, Charles Calef, Carla Kuiken, Thomas Leitner, Bette Korber, Burkhard Morgenstern, Mario Stanke: jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1. Nucleic Acids Research 34(Web-Server-Issue): 463-465 (2006)
33		Maike Tech, Burkhard Morgenstern, Peter Meinicke: TICO: a tool for postprocessing the predictions of prokaryotic translation initiation sites. Nucleic Acids Research 34(Web-Server-Issue): 588-590 (2006)
	2005
32		Amarendran R. Subramanian, Jan Weyer-Menkhoff, Michael Kaufmann, Burkhard Morgenstern: DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment. BMC Bioinformatics 6: 66 (2005)
31		Maike Tech, Nico Pfeifer, Burkhard Morgenstern, Peter Meinicke: TICO: a tool for improving predictions of prokaryotic translation initiation sites. Bioinformatics 21(17): 3568-3569 (2005)
30		Burkhard Morgenstern, Nadine Werner, Sonja J. Prohaska, Rasmus Steinkamp, Isabelle Schneider, Amarendran R. Subramanian, Peter F. Stadler, Jan Weyer-Menkhoff: Multiple sequence alignment with user-defined constraints at GOBICS. Bioinformatics 21(7): 1271-1273 (2005)
29		Mario Stanke, Burkhard Morgenstern: AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints. Nucleic Acids Research 33(Web-Server-Issue): 465-467 (2005)
28		Dirk Pöhler, Nadine Werner, Rasmus Steinkamp, Burkhard Morgenstern: Multiple alignment of genomic sequences using CHAOS, DIALIGN and ABC. Nucleic Acids Research 33(Web-Server-Issue): 532-534 (2005)
	2004
27		Burkhard Morgenstern, Sonja J. Prohaska, Nadine Werner, Jan Weyer-Menkhoff, Isabelle Schneider, Amarendran R. Subramanian, Peter F. Stadler: Multiple sequence alignment with user-defined constraints. German Conference on Bioinformatics 2004: 25-36
26		Martin Schmollinger, Kay Nieselt, Michael Kaufmann, Burkhard Morgenstern: DIALIGN P: Fast pair-wise and multiple sequence alignment using parallel processors. BMC Bioinformatics 5: 128 (2004)
25		Peter Meinicke, Maike Tech, Burkhard Morgenstern, Rainer Merkl: Oligo kernels for datamining on biological sequences: a case study on prokaryotic translation initiation sites. BMC Bioinformatics 5: 169 (2004)
24		Leila Taher, Oliver Rinner, Saurabh Garg, Alexander Sczyrba, Burkhard Morgenstern: AGenDA: gene prediction by cross-species sequence comparison. Nucleic Acids Research 32(Web-Server-Issue): 305-308 (2004)
23		Mario Stanke, Rasmus Steinkamp, Stephan Waack, Burkhard Morgenstern: AUGUSTUS: a web server for gene finding in eukaryotes. Nucleic Acids Research 32(Web-Server-Issue): 309-312 (2004)
22		Burkhard Morgenstern: DIALIGN: multiple DNA and protein sequence alignment at BiBiServ. Nucleic Acids Research 32(Web-Server-Issue): 33-36 (2004)
21		Michael Brudno, Rasmus Steinkamp, Burkhard Morgenstern: The CHAOS/DIALIGN WWW server for multiple alignment of genomic sequences. Nucleic Acids Research 32(Web-Server-Issue): 41-44 (2004)
	2003
20		Michael Sammeth, Burkhard Morgenstern, Jens Stoye: Divide-and-conquer multiple alignment with segment-based constraints. ECCB 2003: 189-195
19		Michael Brudno, Michael Chapman, Berthold Göttgens, Serafim Batzoglou, Burkhard Morgenstern: Fast and sensitive multiple alignment of large genomic sequences. BMC Bioinformatics 4: 66 (2003)
18		Leila Taher, Oliver Rinner, Saurabh Garg, Alexander Sczyrba, Michael Brudno, Serafim Batzoglou, Burkhard Morgenstern: AGenDA: homology-based gene prediction. Bioinformatics 19(12): 1575-1577 (2003)
17		Burkhard Morgenstern, Sachin Goel, Alexander Sczyrba, Andreas W. M. Dress: AltAVisT: Comparing alternative multiple sequence alignments. Bioinformatics 19(3): 425-426 (2003)
	2002
16		Michael Brudno, Burkhard Morgenstern: Fast and Sensitive Alignment of Large Genomic Sequences. CSB 2002: 138-
15		Burkhard Morgenstern: A simple and space-efficient fragment-chaining algorithm for alignment of DNA and protein sequences. Appl. Math. Lett. 15(1): 11-16 (2002)
14		Burkhard Morgenstern, Oliver Rinner, Saïd Abdeddaïm, Dirk Haase, Klaus F. X. Mayer, Andreas W. M. Dress, Hans-Werner Mewes: Exon discovery by genomic sequence alignment. Bioinformatics 18(6): 777-787 (2002)
13		Oliver Rinner, Burkhard Morgenstern: AGenDA: Gene prediction by comparative sequence analysis. In Silico Biology 2: 18 (2002)
12		Hans-Werner Mewes, Dmitrij Frishman, Ulrich Güldener, Gertrud Mannhaupt, Klaus F. X. Mayer, Martin Mokrejs, Burkhard Morgenstern, Martin Münsterkötter, Stephen Rudd, B. Weil: MIPS: a database for genomes and protein sequences. Nucleic Acids Research 30(1): 31-34 (2002)
	2001
11		Oliver Rinner, Burkhard Morgenstern: Gene prediction by comparative sequence analysis. German Conference on Bioinformatics 2001: 131-134
10		Birgitta Geier, Gabi Kastenmüller, Matthias Fellenberg, Hans-Werner Mewes, Burkhard Morgenstern: The HIB database of annotated UniGene clusters. Bioinformatics 17(6): 571-572 (2001)
	2000
9		Saïd Abdeddaïm, Burkhard Morgenstern: Speeding Up the DIALIGN Multiple Alignment Program by Using the `Greedy Alignment of BIOlogical Sequences LIBrary' (GABIOS-LIB). JOBIM 2000: 1-11
8		Burkhard Morgenstern: A space-efficient algorithm for aligning large genomic sequences. Bioinformatics 16(10): 948-949 (2000)
	1999
7		Hans-Peter Lenhof, Burkhard Morgenstern, Knut Reinert: An exact solution for the segment-to-segment multiple sequence alignment problem. Bioinformatics 15(3): 203-210 (1999)
6		Burkhard Morgenstern: DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment. Bioinformatics 15(3): 211-218 (1999)
	1998
5		Knut Reinert, Hans-Peter Lenhof, Burkhard Morgenstern: An exact solution for the Segment-to-Segment multiple sequence alignment problem. German Conference on Bioinformatics 1998
4		Burkhard Morgenstern: DIALIGN2: Improvement of the segment to segment approach to multiple sequence alignment. German Conference on Bioinformatics 1998
3		Burkhard Morgenstern, William R. Atchley, Klaus Hahn, Andreas W. M. Dress: Segment-Based Scores for Pairwise and Multiple Sequence Alignments. ISMB 1998: 115-121
2		Burkhard Morgenstern, Kornelie Frech, Andreas W. M. Dress, Thomas Werner: DIALIGN: finding local similarities by multiple sequence alignment. Bioinformatics 14(3): 290-294 (1998)
	1997
1		Burkhard Morgenstern, Thomas Werner: Dialign 1.0: Multiple alignment by Segment rather than by Position comparison. German Conference on Bioinformatics 1997: 69-71

Coauthor Index

1	Saïd Abdeddaïm	[9] [14]
2	William R. Atchley	[3]
3	Serafim Batzoglou	[18] [19]
4	Michael Brudno	[16] [18] [19] [21]
5	Ingo Bulla	[44]
6	Charles Calef	[34]
7	Michael Chapman	[19]
8	Rolf Daniel	[40]
9	Andreas W. M. Dress	[2] [3] [14] [17] [41]
10	Dirk Erpenbeck	[47]
11	Matthias Fellenberg	[10]
12	Ivo Feussner	[42]
13	Kirstin Feussner	[42]
14	Kornelie Frech	[2]
15	Dmitrij Frishman	[12]
16	Saurabh Garg	[18] [24]
17	Birgitta Geier	[10]
18	Cornelia Göbel	[42]
19	Sachin Goel	[17]
20	Berthold Göttgens	[19]
21	Ulrich Güldener	[12]
22	Irfan Gunduz	[35]
23	Dirk Haase	[14]
24	Klaus Hahn	[3]
25	Alec Hayes	[35]
26	Katharina J. Hoff	[40]
27	Alexander Kaever	[42]
28	Petr Karlovsky	[42]
29	Gabi Kastenmüller	[10]
30	Michael Kaufmann	[26] [32] [43]
31	Oliver Keller	[35]
32	Bette Korber	[34] [37] [44]
33	Carla Kuiken	[34] [37]
34	Thomas Leitner	[34] [37] [44]
35	Hans-Peter Lenhof	[5] [7]
36	Thomas Lingner	[40] [42] [46]
37	Gertrud Mannhaupt	[12]
38	Klaus F. X. Mayer	[12] [14]
39	Peter Meinicke	[25] [31] [33] [40] [42]
40	Rainer Merkl	[25]
41	Hans-Werner Mewes	[10] [12] [14]
42	Martin Mokrejs	[12]
43	Martin Münsterkötter	[12]
44	Kay Nieselt	[26]
45	Nico Pfeifer	[31]
46	Kerstin Pick	[47]
47	Dirk Pöhler	[28] [39]
48	Sonja J. Prohaska	[27] [30] [39]
49	Knut Reinert	[5] [7]
50	Harald Richter	[46]
51	Oliver Rinner	[11] [13] [14] [18] [24]
52	Stephen Rudd	[12]
53	Michael Sammeth	[20]
54	Martin Schmollinger	[26]
55	Isabelle Schneider	[27] [30]
56	Oliver Schöffmann	[36]
57	Fabian Schreiber	[45] [47]
58	Anne-Kathrin Schultz	[34] [37] [44]
59	Alexander Sczyrba	[17] [18] [24]
60	Dietmar Sommerfeld	[46]
61	Peter F. Stadler	[27] [30] [38] [39]
62	Mario Stanke	[23] [29] [34] [35] [36] [37] [44] [46]
63	Rasmus Steinkamp	[21] [23] [28] [30]
64	Jens Stoye	[20]
65	Amarendran R. Subramanian	[27] [30] [32] [43]
66	Leila Taher	[18] [24]
67	Maike Tech	[25] [31] [33] [40]
68	Stephan Waack	[23] [35] [36]
69	Holger Wagner	[41]
70	B. Weil	[12]
71	Nadine Werner	[27] [28] [30]
72	Thomas Werner	[1] [2]
73	Jan Weyer-Menkhoff	[27] [30] [32]
74	Gert Wörheide	[45] [47]
75	Ming Zhang	[34] [37] [44]

Colors in the list of coauthors