Eugene W. Myers

Gene Myers

	2009
85		Marie-France Sagot, B. J. Morrison McKay, Gene Myers: ISMB/ECCB 2009 Stockholm. Bioinformatics 25(12): 1570-1573 (2009)
84		Hanchuan Peng, Fuhui Long, Eugene W. Myers: VANO: a volume-object image annotation system. Bioinformatics 25(5): 695-697 (2009)
	2008
83		Fuhui Long, Hanchuan Peng, Xiao Liu, Stuart K. Kim, Gene Myers: Automatic Recognition of Cells (ARC) for 3D Images of C. elegans. RECOMB 2008: 128-139
82		Hanchuan Peng, Fuhui Long, Xiao Liu, Stuart K. Kim, Eugene W. Myers: Straightening Caenorhabditis elegans images. Bioinformatics 24(2): 234-242 (2008)
	2007
81		Hanchuan Peng, Fuhui Long, Eugene W. Myers: Straightening Worm Images. ISBI 2007: 292-295
80		Fuhui Long, Hanchuan Peng, Eugene W. Myers: Automatic Segmentation of Nuclei in 3d Microscopy Images of C.Elegans. ISBI 2007: 536-539
79		Paul Medvedev, Konstantinos Georgiou, Gene Myers, Michael Brudno: Computability of Models for Sequence Assembly. WABI 2007: 289-301
78		Gad M. Landau, Eugene W. Myers, Michal Ziv-Ukelson: Two algorithms for LCS Consecutive Suffix Alignment. J. Comput. Syst. Sci. 73(7): 1095-1117 (2007)
	2006
77		Gene Myers: Imaging-Based Systems Biology. HiPC 2006: 5
76		Hanchuan Peng, Fuhui Long, Michael B. Eisen, Eugene W. Myers: Clustering gene expression patterns of fly embryos. ISBI 2006: 1144-1147
75		Tien-ho Lin, Eugene W. Myers, Eric P. Xing: Interpreting anonymous DNA samples from mass disasters - probabilistic forensic inference using genetic markers. ISMB (Supplement of Bioinformatics) 2006: 298-306
74		Kim R. Rasmussen, Jens Stoye, Eugene W. Myers: Efficient q-Gram Filters for Finding All epsilon-Matches over a Given Length. Journal of Computational Biology 13(2): 296-308 (2006)
	2005
73		Rita Casadio, Gene Myers: Algorithms in Bioinformatics, 5th International Workshop, WABI 2005, Mallorca, Spain, October 3-6, 2005, Proceedings Springer 2005
72		Eugene W. Myers: The fragment assembly string graph. ECCB/JBI 2005: 85
71		Robert C. Edgar, Eugene W. Myers: PILER: identification and classification of genomic repeats. ISMB (Supplement of Bioinformatics) 2005: 152-158
70		Roded Sharan, Eugene W. Myers: A motif-based framework for recognizing sequence families. ISMB (Supplement of Bioinformatics) 2005: 387-393
69		Kim R. Rasmussen, Jens Stoye, Eugene W. Myers: Efficient q-Gram Filters for Finding All epsilon-Matches over a Given Length. RECOMB 2005: 189-203
	2004
68		Gad M. Landau, Eugene W. Myers, Michal Ziv-Ukelson: Two Algorithms for LCS Consecutive Suffix Alignment. CPM 2004: 173-193
67		Eugene W. Myers: Whole Genome Sequencing, Comparative Genomics, and Systems Biology. CSB 2004: 4
66		Hanchuan Peng, Eugene W. Myers: Comparing in situ mRNA expression patterns of drosophila embryos. RECOMB 2004: 157-166
	2003
65		Gene Myers: ISMB 2003 - Editorial. ISMB (Supplement of Bioinformatics) 2003: 1-2
64		Gene Myers: Advances in DNA Sequencing. PCK50 2003: 9
63		Gene Myers, Richard Durbin: A Table-Driven, Full-Sensitivity Similarity Search Algorithm. Journal of Computational Biology 10(2): 103-118 (2003)
	2002
62		Gene Myers: The Assembly of the Human and Mouse Genomes. COCOON 2002: 1
61		Gene Myers, Richard Durbin: Invited Lecture - Accelerating Smith-Waterman Searches. WABI 2002: 331-342
60		Daniel H. Huson, Knut Reinert, Eugene W. Myers: The greedy path-merging algorithm for contig scaffolding. J. ACM 49(5): 603-615 (2002)
	2001
59		Daniel H. Huson, Knut Reinert, Saul A. Kravitz, Karin A. Remington, Arthur L. Delcher, Ian M. Dew, Michael Flanigan, Aaron L. Halpern, Zhongwu Lai, Clark M. Mobarry, Granger G. Sutton, Eugene W. Myers: Design of a compartmentalized shotgun assembler for the human genome. ISMB (Supplement of Bioinformatics) 2001: 132-139
58		Daniel H. Huson, Knut Reinert, Eugene W. Myers: The greedy path-merging algorithm for sequence assembly. RECOMB 2001: 157-163
57		Gene Myers: Comparing sequence scaffolds. RECOMB 2001: 224-230
56		Daniel H. Huson, Aaron L. Halpern, Zhongwu Lai, Eugene W. Myers, Knut Reinert, Granger G. Sutton: Comparing Assemblies Using Fragments and Mate-Pairs. WABI 2001: 294-306
	2000
55		Gene Myers: The whole genome assembly of Drosophila. SODA 2000: 753
	1999
54		Gene Myers: A Whole Genome Assembler for Drosophila. German Conference on Bioinformatics 1999: 44
53		Gene Myers: A Dataset Generator for Whole Genome Shotgun Sequencing. ISMB 1999: 202-210
52		Eric L. Anson, Eugene W. Myers: Algorithms for whole genome shotgun sequencing. RECOMB 1999: 1-9
51		Gene Myers: Progress toward the whole-genome shotgun sequencing of Drosophila. RECOMB 1999: 279
50		Gene Myers: A Fast Bit-Vector Algorithm for Approximate String Matching Based on Dynamic Programming. J. ACM 46(3): 395-415 (1999)
	1998
49		Gene Myers: A Fast Bit-Vector Algorithm for Approximate String Matching Based on Dynamic Programming. CPM 1998: 1-13
48		Eugene W. Myers, Paulo Oliva, Katia S. Guimarães: Reporting Exact and Approximate Regular Expression Matches. CPM 1998: 91-103
47		Marie-France Sagot, Eugene W. Myers: Identifying satellites in nucleic acid sequences. RECOMB 1998: 234-242
46		Samuel Levy, L. Compagnoni, Eugene W. Myers, Gary D. Stormo: Xlandscape: the graphical display of word frequencies in sequences. Bioinformatics 14(1): 74-80 (1998)
45		Marie-France Sagot, Eugene W. Myers: Identifying Satellites and Periodic Repetitions in Biological Sequences. Journal of Computational Biology 5(3): 539-554 (1998)
44		Gad M. Landau, Eugene W. Myers, Jeanette P. Schmidt: Incremental String Comparison. SIAM J. Comput. 27(2): 557-582 (1998)
	1997
43		Stefan Kurtz, Gene Myers: Estimating the Probability of Approximate Matches. CPM 1997: 52-64
42		Mudita Jain, Eugene W. Myers: Algorithms for computing and integrating physical maps using unique probes. RECOMB 1997: 151-161
41		Gene Myers, Sanford Selznick, Zheng Zhang, Webb Miller: Progressive multiple alignment with constraints. RECOMB 1997: 220-225
40		Eric L. Anson, Eugene W. Myers: ReAligner: a program for refining DNA sequence multi-alignments. RECOMB 1997: 9-16
39		Eric L. Anson, Eugene W. Myers: ReAligner: A Program for Refining DNA Sequence Multi-Alignments. Journal of Computational Biology 4(3): 369-384 (1997)
38		Mudita Jain, Eugene W. Myers: Algorithms for Computing and Integrating Physical Maps Using Unique Probes. Journal of Computational Biology 4(4): 449-466 (1997)
	1996
37		Daniel S. Hirschberg, Eugene W. Myers: Combinatorial Pattern Matching, 7th Annual Symposium, CPM 96, Laguna Beach, California, USA, June 10-12, 1996, Proceedings Springer 1996
36		Sun Wu, Udi Manber, Eugene W. Myers: A Subquadratic Algorithm for Approximate Limited Expression Matching. Algorithmica 15(1): 50-67 (1996)
35		Gene Myers, Sanford Selznick, Zheng Zhang, Webb Miller: Progressive Multiple Alignment with Constraints. Journal of Computational Biology 3(4): 563-572 (1996)
34		Sampath Kannan, Eugene W. Myers: An Algorithm for Locating Nonoverlapping Regions of Maximum Alignment Score. SIAM J. Comput. 25(3): 648-662 (1996)
	1995
33		Gene Myers, Webb Miller: Chaining Multiple-Alignment Fragments in Sub-Quadratic Time. SODA 1995: 38-47
32		Eugene W. Myers: Guest Editor's Foreword: Special Issue on Computational Molecular Biology. Algorithmica 13(1/2): 1-6 (1995)
31		James R. Knight, Eugene W. Myers: Super-Pattern Matching. Algorithmica 13(1/2): 211-243 (1995)
30		John D. Kececioglu, Eugene W. Myers: Combinatiorial Algorithms for DNA Sequence Assembly. Algorithmica 13(1/2): 7-51 (1995)
29		James R. Knight, Eugene W. Myers: Approximate Regular Expression Pattern Matching with Concave Gap Penalties. Algorithmica 14(1): 85-121 (1995)
28		Gene Myers: Approximately Matching Context-Free Languages. Inf. Process. Lett. 54(2): 85-92 (1995)
27		Sun Wu, Udi Manber, Eugene W. Myers: A Subquadratic Algorithm for Approximate Regular Expression Matching. J. Algorithms 19(3): 346-360 (1995)
26		Mudita Jain, Eugene W. Myers: A Note on Scoring Clones Given a Probe Ordering. Journal of Computational Biology 2(1): 33-37 (1995)
25		Eugene W. Myers: Toward Simplifying and Accurately Formulating Fragment Assembly. Journal of Computational Biology 2(2): 275-290 (1995)
	1994
24		Eugene W. Myers: A Sublinear Algorithm for Approximate Keyword Searching. Algorithmica 12(4/5): 345-374 (1994)
	1993
23		Sampath Kannan, Eugene W. Myers: An Algorithm for Locating Non-Overlapping Regions of Maximum Alignment Score. CPM 1993: 74-86
22		Udi Manber, Eugene W. Myers: Suffix Arrays: A New Method for On-Line String Searches. SIAM J. Comput. 22(5): 935-948 (1993)
	1992
21		James R. Knight, Eugene W. Myers: Approximate Regular Expression Pattern Matching with Concave Gap Penalties. CPM 1992: 67-78
20		Gene Myers: Approximate Matching of Network Expressions with Spacers. LATIN 1992: 372-386
19		Eugene W. Myers: A Four Russians Algorithm for Regular Expression Pattern Matching. J. ACM 39(2): 430-448 (1992)
	1990
18		Udi Manber, Gene Myers: Suffix Arrays: A New Method for On-Line String Searches. SODA 1990: 319-327
17		Sun Wu, Udi Manber, Gene Myers, Webb Miller: An O(NP) Sequence Comparison Algorithm. Inf. Process. Lett. 35(6): 317-323 (1990)
	1989
16		Eugene W. Myers, Webb Miller: Row Replacement Algorithms for Screen Editors. ACM Trans. Program. Lang. Syst. 11(1): 33-56 (1989)
	1988
15		Eugene W. Myers, Webb Miller: Optimal alignments in linear space. Computer Applications in the Biosciences 4(1): 11-17 (1988)
14		J. D. Hall, Eugene W. Myers: A software tool for finding locally optimal alignments in protein and nucleic acid sequences. Computer Applications in the Biosciences 4(1): 35-40 (1988)
13		Webb Miller, Eugene W. Myers: A Simple Row-replacement Method. Softw., Pract. Exper. 18(7): 597-611 (1988)
	1987
12		Christopher W. Fraser, Eugene W. Myers: An Editor for Revision Control. ACM Trans. Program. Lang. Syst. 9(2): 277-295 (1987)
	1986
11		Eugene W. Myers: An O(ND) Difference Algorithm and Its Variations. Algorithmica 1(2): 251-266 (1986)
10		Eugene W. Myers, D. W. Mount: Computer program for the IBM personal computer which searches for approximate matches to short oligonucleotide sequences in long target DNA sequences. Nucleic Acids Research 14(1): 501-508 (1986)
9		Webb Miller, Eugene W. Myers: Side-effects in Automatic File Updating. Softw., Pract. Exper. 16(9): 809-820 (1986)
	1985
8		Eugene W. Myers: An O(E log E + I) Expected Time Algorithm for the Planar Segment Intersection Problem. SIAM J. Comput. 14(3): 625-637 (1985)
7		Webb Miller, Eugene W. Myers: A File Comparison Program. Softw., Pract. Exper. 15(11): 1025-1040 (1985)
	1984
6		Eugene W. Myers: Efficient Applicative Data Types. POPL 1984: 66-75
5		Christopher W. Fraser, Eugene W. Myers, Alan L. Wendt: Analyzing and compressing assembly code. SIGPLAN Symposium on Compiler Construction 1984: 117-121
	1983
4		Eugene W. Myers: An Applicative Random-Access Stack. Inf. Process. Lett. 17(5): 241-248 (1983)
	1981
3		Eugene W. Myers, Leon J. Osterweil: BIGMAC II: A FORTRAN Language Augmentation Tool. ICSE 1981: 410-421
2		Eugene W. Myers: A Precise Interprocedural Data Flow Algorithm. POPL 1981: 219-230
	1978
1		Harold N. Gabow, Eugene W. Myers: Finding All Spanning Trees of Directed and Undirected Graphs. SIAM J. Comput. 7(3): 280-287 (1978)

Coauthor Index

1	Eric L. Anson	[39] [40] [52]
2	Michael Brudno	[79]
3	Rita Casadio	[73]
4	L. Compagnoni	[46]
5	Arthur L. Delcher	[59]
6	Ian M. Dew	[59]
7	Richard Durbin	[61] [63]
8	Robert C. Edgar	[71]
9	Michael B. Eisen	[76]
10	Michael Flanigan	[59]
11	Christopher W. Fraser	[5] [12]
12	Harold N. Gabow	[1]
13	Konstantinos Georgiou	[79]
14	Katia S. Guimarães	[48]
15	J. D. Hall	[14]
16	Aaron L. Halpern	[56] [59]
17	Daniel S. Hirschberg	[37]
18	Daniel H. Huson	[56] [58] [59] [60]
19	Mudita Jain	[26] [38] [42]
20	Sampath Kannan	[23] [34]
21	John D. Kececioglu	[30]
22	Stuart K. Kim	[82] [83]
23	James R. Knight	[21] [29] [31]
24	Saul A. Kravitz	[59]
25	Stefan Kurtz	[43]
26	Zhongwu Lai	[56] [59]
27	Gad M. Landau	[44] [68] [78]
28	Samuel Levy	[46]
29	Tien-ho Lin	[75]
30	Xiao Liu	[82] [83]
31	Fuhui Long	[76] [80] [81] [82] [83] [84]
32	Udi Manber	[17] [18] [22] [27] [36]
33	B. J. Morrison McKay	[85]
34	Paul Medvedev	[79]
35	Webb Miller	[7] [9] [13] [15] [16] [17] [33] [35] [41]
36	Clark M. Mobarry	[59]
37	D. W. Mount	[10]
38	Paulo Oliva	[48]
39	Leon J. Osterweil	[3]
40	Hanchuan Peng	[66] [76] [80] [81] [82] [83] [84]
41	Kim R. Rasmussen	[69] [74]
42	Knut Reinert	[56] [58] [59] [60]
43	Karin A. Remington	[59]
44	Marie-France Sagot	[45] [47] [85]
45	Jeanette P. Schmidt	[44]
46	Sanford Selznick	[35] [41]
47	Roded Sharan	[70]
48	Gary D. Stormo	[46]
49	Jens Stoye	[69] [74]
50	Granger G. Sutton	[56] [59]
51	Alan L. Wendt	[5]
52	Sun Wu	[17] [27] [36]
53	Eric P. Xing	[75]
54	Zheng Zhang	[35] [41]
55	Michal Ziv-Ukelson	[68] [78]

Colors in the list of coauthors