Marco Pagni

	2009
23		Alexandre Gattiker, Christophe Dessimoz, Adrian Schneider, Ioannis Xenarios, Marco Pagni, Jacques Rougemont: The Microbe browser for comparative genomics. Nucleic Acids Research 37(Web-Server-Issue): 296-299 (2009)
	2008
22		Marco Pagni, Jörg Hau, Heinz Stockinger: A Multi-protocol Bioinformatics Web Service: Use SOAP, Take a REST or Go with HTML. CCGRID 2008: 728-734
21		Heinz Stockinger, Teresa K. Attwood, Shahid Nadeem Chohan, Richard G. Côté, Philippe Cudré-Mauroux, Laurent Falquet, Pedro Fernandes, Robert D. Finn, Taavi Hupponen, Eija Korpelainen, Alberto Labarga, Aurélie Laugraud, Tania Lima, Evangelos Pafilis, Marco Pagni, Steve Pettifer, Isabelle Phan, Nazim Rahman: Experience using web services for biological sequence analysis. Briefings in Bioinformatics 9(6): 493-505 (2008)
	2007
20		Marco Pagni, Vassilios Ioannidis, Lorenzo Cerutti, Monique Zahn-Zabal, C. Victor Jongeneel, Jörg Hau, Olivier Martin, Dmitri Kuznetsov, Laurent Falquet: MyHits: improvements to an interactive resource for analyzing protein sequences. Nucleic Acids Research 35(Web-Server-Issue): 433-437 (2007)
19		Jörg Hau, Michael Muller, Marco Pagni: HitKeeper, a generic software package for hit list management. Source Code for Biology and Medicine 2: (2007)
	2006
18		Heinz Stockinger, Marco Pagni, Lorenzo Cerutti, Laurent Falquet: Grid Approach to Embarrassingly Parallel CPU-Intensive Bioinformatics Problems. e-Science 2006: 58
17		Nicolas Hulo, Amos Bairoch, Virginie Bulliard, Lorenzo Cerutti, Edouard De Castro, Petra S. Langendijk-Genevaux, Marco Pagni, Christian J. A. Sigrist: The PROSITE database. Nucleic Acids Research 34(Database-Issue): 227-230 (2006)
	2005
16		Peter Sperisen, Marco Pagni: JACOP: A simple and robust method for the automated classification of protein sequences with modular architecture. BMC Bioinformatics 6: 216 (2005)
15		Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Paul Bradley, Peer Bork, Phillip Bucher, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Jennifer McDowall, Alex Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Marco Pagni, Chris P. Ponting, Emmanuel Quevillon, Jeremy D. Selengut, Christian J. A. Sigrist, Ville Silventoinen, David J. Studholme, Robert Vaughan, Cathy H. Wu: InterPro, progress and status in 2005. Nucleic Acids Research 33(Database-Issue): 201-205 (2005)
	2004
14		Peter Sperisen, Christian Iseli, Marco Pagni, Brian J. Stevenson, Philipp Bucher, C. Victor Jongeneel: trome, trEST and trGEN: databases of predicted protein sequences. Nucleic Acids Research 32(Database-Issue): 509-511 (2004)
13		Marco Pagni, Vassilios Ioannidis, Lorenzo Cerutti, Monique Zahn-Zabal, C. Victor Jongeneel, Laurent Falquet: MyHits: a new interactive resource for protein annotation and domain identification. Nucleic Acids Research 32(Web-Server-Issue): 332-335 (2004)
	2003
12		Alexandre Gattiker, Karine Michoud, Catherine Rivoire, Andrea H. Auchincloss, Elisabeth Coudert, Tania Lima, Paul Kersey, Marco Pagni, Christian J. A. Sigrist, Corinne Lachaize, Anne-Lise Veuthey, Elisabeth Gasteiger, Amos Bairoch: Automated annotation of microbial proteomes in SWISS-PROT. Computational Biology and Chemistry 27(1): 49-58 (2003)
11		Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Daniel Barrell, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Sam Griffiths-Jones, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, David Lonsdale, Ville Silventoinen, Sandra E. Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Jeremy D. Selengut, Florence Servant, Christian J. A. Sigrist, Robert Vaughan, Evgeni M. Zdobnov: The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Research 31(1): 315-318 (2003)
10		Laurent Falquet, Lorenza Bordoli, Vassilios Ioannidis, Marco Pagni, C. Victor Jongeneel: Swiss EMBnet node web server. Nucleic Acids Research 31(13): 3782-3783 (2003)
	2002
9		Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Sam Griffiths-Jones, Daniel H. Haft, Henning Hermjakob, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, Sue Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Florence Servant, Christian J. A. Sigrist: InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites Briefings in Bioinformatics 3(3): 225-235 (2002)
8		Christian J. A. Sigrist, Lorenzo Cerutti, Nicolas Hulo, Alexandre Gattiker, Laurent Falquet, Marco Pagni, Amos Bairoch, Philipp Bucher: PROSITE: A Documented Database Using Patterns and Profiles as Motif Descriptors. Briefings in Bioinformatics 3(3): 265-274 (2002)
7		Laurent Falquet, Marco Pagni, Philipp Bucher, Nicolas Hulo, Christian J. A. Sigrist, Kay Hofmann, Amos Bairoch: The PROSITE database, its status in 2002. Nucleic Acids Research 30(1): 235-238 (2002)
	2001
6		Thomas Junier, Marco Pagni, Philipp Bucher: mmsearch: a motif arrangement language and search program. Bioinformatics 17(12): 1234-1235 (2001)
5		Marco Pagni, C. Victor Jongeneel: Making Sense of Score Statistics for Sequence Alignments. Briefings in Bioinformatics 2(1): 51-67 (2001)
4		Marco Pagni, Christian Iseli, Thomas Junier, Laurent Falquet, C. Victor Jongeneel, Philipp Bucher: trEST, trGEN and Hits: access to databases of predicted protein sequences. Nucleic Acids Research 29(1): 148-151 (2001)
3		Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov: The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Research 29(1): 37-40 (2001)
	2000
2		Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov: InterPro-an integrated documentation resource for protein families, domains and functional sites. Bioinformatics 16(12): 1145-1150 (2000)
1		Thomas Junier, Marco Pagni: Dotlet: diagonal plots in a Web browser. Bioinformatics 16(2): 178-179 (2000)

Coauthor Index

1	Rolf Apweiler	[2] [3] [9] [11] [15]
2	Terri K. Attwood (Teresa K. Attwood)	[2] [3] [9] [11] [15] [21]
3	Andrea H. Auchincloss	[12]
4	Amos Bairoch	[2] [3] [7] [8] [9] [11] [12] [15] [17]
5	Daniel Barrell	[11]
6	Alex Bateman	[2] [3] [9] [11] [15]
7	David Binns	[9] [11] [15]
8	Ewan Birney	[2] [3]
9	Margaret Biswas	[2] [3] [9] [11]
10	Lorenza Bordoli	[10]
11	Peer Bork	[9] [11] [15]
12	Paul Bradley	[9] [11] [15]
13	Philipp Bucher	[2] [3] [4] [6] [7] [8] [9] [11] [14]
14	Phillip Bucher	[15]
15	Virginie Bulliard	[17]
16	Edouard De Castro	[17]
17	Lorenzo Cerutti	[2] [3] [8] [13] [15] [17] [18] [20]
18	Shahid Nadeem Chohan	[21]
19	Richard R. Copley	[9] [11] [15]
20	Florence Corpet	[2] [3]
21	Richard G. Côté	[21]
22	Elisabeth Coudert	[12]
23	Emmanuel Courcelle	[9] [11] [15]
24	Michael D. R. Croning	[2] [3]
25	Philippe Cudré-Mauroux	[21]
26	Ujjwal Das	[11] [15]
27	Christophe Dessimoz	[23]
28	Richard Durbin	[2] [3] [9] [11] [15]
29	Laurent Falquet	[2] [3] [4] [7] [8] [9] [10] [11] [13] [18] [20] [21]
30	Pedro Fernandes	[21]
31	Robert D. Finn	[21]
32	Wolfgang Fleischmann	[2] [3] [9] [11] [15]
33	Elisabeth Gasteiger	[12]
34	Alexandre Gattiker	[8] [12] [23]
35	Julian Gough	[15]
36	Jérôme Gouzy	[2] [3] [9]
37	Sam Griffiths-Jones	[9] [11]
38	Daniel H. Haft	[9] [11] [15]
39	Nicola Harte	[11] [15]
40	Jörg Hau	[19] [20] [22]
41	Henning Hermjakob	[2] [3] [9]
42	Kay Hofmann	[7]
43	Nicolas Hulo	[2] [3] [7] [8] [9] [11] [15] [17]
44	Taavi Hupponen	[21]
45	Vassilios Ioannidis	[10] [13] [20]
46	Christian Iseli	[4] [14]
47	Inge Jonassen	[2] [3]
48	C. Victor Jongeneel	[4] [5] [10] [13] [14] [20]
49	Thomas Junier	[1] [4] [6]
50	Daniel Kahn	[2] [3] [9] [11] [15]
51	Alexander Kanapin	[2] [3] [9] [11] [15]
52	Youla Karavidopoulou	[2] [3]
53	Paul Kersey	[12]
54	Eija Korpelainen	[21]
55	Maria Krestyaninova	[9] [11] [15]
56	Dmitri Kuznetsov	[20]
57	Alberto Labarga	[21]
58	Corinne Lachaize	[12]
59	Petra S. Langendijk-Genevaux	[17]
60	Aurélie Laugraud	[21]
61	Ivica Letunic	[9] [11] [15]
62	Tania Lima	[12] [21]
63	David Lonsdale	[11] [15]
64	Rodrigo Lopez	[2] [3] [9] [11] [15]
65	Martin Madera	[15]
66	Olivier Martin	[20]
67	Beate Marx	[2] [3]
68	John Maslen	[15]
69	Jennifer McDowall	[15]
70	Karine Michoud	[12]
71	Alex Mitchell	[15]
72	Nicola J. Mulder	[2] [3] [9] [11] [15]
73	Michael Muller	[19]
74	Anastasia N. Nikolskaya	[15]
75	Thomas M. Oinn (Tom Oinn)	[2] [3]
76	Sandra E. Orchard	[11] [15]
77	Sue Orchard	[9]
78	Evangelos Pafilis	[21]
79	Steve Pettifer	[21]
80	David Peyruc	[9] [11]
81	Isabelle Phan (I. Q. H. Phan)	[21]
82	Chris P. Ponting	[9] [11] [15]
83	Emmanuel Quevillon	[15]
84	Nazim Rahman	[21]
85	Catherine Rivoire	[12]
86	Jacques Rougemont	[23]
87	Adrian Schneider	[23]
88	Jeremy D. Selengut	[11] [15]
89	Florence Servant	[2] [3] [9] [11]
90	Christian J. A. Sigrist	[2] [3] [7] [8] [9] [11] [12] [15] [17]
91	Ville Silventoinen	[11] [15]
92	Peter Sperisen	[14] [16]
93	Brian J. Stevenson	[14]
94	Heinz Stockinger	[18] [21] [22]
95	David J. Studholme	[15]
96	Robert Vaughan	[11] [15]
97	Anne-Lise Veuthey	[12]
98	Cathy H. Wu	[15]
99	Ioannis Xenarios	[23]
100	Monique Zahn-Zabal	[13] [20]
101	Evgeni M. Zdobnov	[2] [3] [11]