 | 2009 |
|---|
| 31 |       | Matteo Ré,
Giulio Pavesi:
Detecting conserved coding genomic regions through signal processing of nucleotide substitution patterns.
Artificial Intelligence in Medicine 45(2-3): 117-123 (2009) |
| 30 | | Giulio Pavesi,
Giorgio Valentini:
Classification of co-expressed genes from DNA regulatory regions.
Information Fusion 10(3): 233-241 (2009) |
| 29 | | Federico Zambelli,
Graziano Pesole,
Giulio Pavesi:
Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes.
Nucleic Acids Research 37(Web-Server-Issue): 247-252 (2009) |
| 2008 |
|---|
| 28 | | Tiziana Castrignanò,
M. D'Antonio,
Anna Anselmo,
Danilo Carrabino,
A. D'Onorio De Meo,
Anna Maria D'Erchia,
Flavio Licciulli,
M. Mangiulli,
Flavio Mignone,
Giulio Pavesi,
Ernesto Picardi,
A. Riva,
Raffaella Rizzi,
Paola Bonizzoni,
Graziano Pesole:
ASPicDB: A database resource for alternative splicing analysis.
Bioinformatics 24(10): 1300-1304 (2008) |
| 2007 |
|---|
| 27 | | Matteo Ré,
Giulio Pavesi:
Signal Processing in Comparative Genomics.
WILF 2007: 544-550 |
| 26 | | Giulio Pavesi,
Federico Zambelli:
Prediction of over Represented Transcription Factor Binding Sites in Co-regulated Genes Using Whole Genome Matching Statistics.
WILF 2007: 651-658 |
| 25 | | Giulio Pavesi,
Federico Zambelli,
Graziano Pesole:
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences.
BMC Bioinformatics 8: (2007) |
| 2006 |
|---|
| 24 | | Giulio Pavesi,
Paolo Mereghetti,
Federico Zambelli,
Marco Stefani,
Giancarlo Mauri,
Graziano Pesole:
MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes.
Nucleic Acids Research 34(Web-Server-Issue): 566-570 (2006) |
| 2005 |
|---|
| 23 | | Shunsuke Inenaga,
Hiromasa Hoshino,
Ayumi Shinohara,
Masayuki Takeda,
Setsuo Arikawa,
Giancarlo Mauri,
Giulio Pavesi:
On-line construction of compact directed acyclic word graphs.
Discrete Applied Mathematics 146(2): 156-179 (2005) |
| 22 | | Giancarlo Mauri,
Giulio Pavesi:
Algorithms for pattern matching and discovery in RNA secondary structure.
Theor. Comput. Sci. 335(1): 29-51 (2005) |
| 2004 |
|---|
| 21 | | Stefania Bandini,
Sara Manzoni,
Ahmad Naimzada,
Giulio Pavesi:
A CA Approach to Study Complex Dynamics in Asset Markets.
ACRI 2004: 591-600 |
| 20 | | Giancarlo Mauri,
Roberto Mosca,
Giulio Pavesi:
A GA Approach to the Definition of Regulatory Signals in Genomic Sequences.
GECCO (1) 2004: 380-391 |
| 19 | | Stefania Bandini,
Giancarlo Mauri,
Giulio Pavesi,
Carla Simone:
Computing with a Distributed Reaction-Diffusion Model.
MCU 2004: 93-103 |
| 18 |  | Giulio Pavesi,
Giancarlo Mauri,
Graziano Pesole:
In silico representation and discovery of transcription factor binding sites.
Briefings in Bioinformatics 5(3): 217-236 (2004) |
| 17 | | Giulio Pavesi,
Giancarlo Mauri,
Graziano Pesole:
An Algorithm for Finding Conserved Secondary Structure Motifs in Unaligned RNA Sequences.
J. Comput. Sci. Technol. 19(1): 2-12 (2004) |
| 16 | | Giulio Pavesi,
Paolo Mereghetti,
Giancarlo Mauri,
Graziano Pesole:
Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes.
Nucleic Acids Research 32(Web-Server-Issue): 199-203 (2004) |
| 2003 |
|---|
| 15 | | Giancarlo Mauri,
Giulio Pavesi:
Pattern Discovery in RNA Secondary Structure Using Affix Trees.
CPM 2003: 278-294 |
| 14 | | Giulio Pavesi,
Giancarlo Mauri,
Graziano Pesole:
Predicting Conserved Hairpin Motifs in Unaligned RNA Sequences.
ICTAI 2003: 10-17 |
| 2002 |
|---|
| 13 | | Stefania Bandini,
Giulio Pavesi:
Simulation of Vegetable Populations Dynamics Based on Cellular Automata.
ACRI 2002: 202-209 |
| 12 | | Giancarlo Mauri,
Giulio Pavesi:
A parallel algorithm for pattern discovery in biological sequences.
Future Generation Comp. Syst. 18(6): 849-854 (2002) |
| 11 | | Stefania Bandini,
Giulio Pavesi:
Controlled generation of two-dimensional patterns based on Stochastic Cellular Automata.
Future Generation Comp. Syst. 18(7): 973-981 (2002) |
| 2001 |
|---|
| 10 | | Stefania Bandini,
Sara Manzoni,
Giulio Pavesi,
Carla Simone:
L*MASS: A Language for Situated Multi-agent Systems.
AI*IA 2001: 249-254 |
| 9 | | Shunsuke Inenaga,
Hiromasa Hoshino,
Ayumi Shinohara,
Masayuki Takeda,
Setsuo Arikawa,
Giancarlo Mauri,
Giulio Pavesi:
On-Line Construction of Compact Directed Acyclic Word Graphs.
CPM 2001: 169-180 |
| 8 | | Giulio Pavesi,
Giancarlo Mauri,
Graziano Pesole:
An algorithm for finding signals of unknown length in DNA sequences.
ISMB (Supplement of Bioinformatics) 2001: 207-214 |
| 7 | | Stefania Bandini,
Giancarlo Mauri,
Giulio Pavesi:
Parallel Generation of Percolation Beds Based on Stochastic Cellular Automata.
PaCT 2001: 391-400 |
| 6 | | Giancarlo Mauri,
Giulio Pavesi:
Parallel Algorithms for the Analysis of Biological Sequences.
PaCT 2001: 456-468 |
| 5 | | Giulio Pavesi,
Giancarlo Mauri,
Graziano Pesole:
Methods for Pattern Discovery in Unaligned Biological Sequences.
Briefings in Bioinformatics 2(4): 417 (2001) |
| 4 | | Stefania Bandini,
Giancarlo Mauri,
Giulio Pavesi,
Carla Simone:
Parallel simulation of reaction-diffusion phenomena in percolation processes : A model based on cellular automata.
Future Generation Comp. Syst. 17(6): 679-688 (2001) |
| 2000 |
|---|
| 3 | | Giancarlo Mauri,
Giulio Pavesi:
Approximation Algorithms for String Folding Problems.
IFIP TCS 2000: 45-58 |
| 1999 |
|---|
| 2 | | Stefania Bandini,
Giancarlo Mauri,
Giulio Pavesi,
Carla Simone:
A Parallel Model Based on Cellular Automata for the Simulation of Pesticide Percolation in the Soil.
PaCT 1999: 383-394 |
| 1 | | Giancarlo Mauri,
Giulio Pavesi,
Antonio Piccolboni:
Approximation Algorithms for Protein Folding Prediction.
SODA 1999: 945-946 |
