Yves Van de Peer

	2011
55		Pieter Audenaert, Thomas Van Parys, Florian Brondel, Mario Pickavet, Piet Demeester, Yves Van de Peer, Tom Michoel: CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks. Bioinformatics 27(11): 1587-1588 (2011)
54		Jan Fostier, Sebastian Proost, Bart Dhoedt, Yvan Saeys, Piet Demeester, Yves Van de Peer, Klaas Vandepoele: A greedy, graph-based algorithm for the alignment of multiple homologous gene lists. Bioinformatics 27(6): 749-756 (2011)
53		Sofie Van Landeghem, Bernard De Baets, Yves Van de Peer, Yvan Saeys: High-Precision Bio-molecular Event Extraction from Text Using Parallel Binary Classifiers. Computational Intelligence 27(4): 645-664 (2011)
52		Rubén Armañanzas, Yvan Saeys, Iñaki Inza, Miguel García-Torres, Concha Bielza, Yves Van de Peer, Pedro Larrañaga: Peakbin Selection in Mass Spectrometry Data Using a Consensus Approach with Estimation of Distribution Algorithms. IEEE/ACM Trans. Comput. Biology Bioinform. 8(3): 760-774 (2011)
	2010
51		Eric Bonnet, Ying He, Kenny Billiau, Yves Van de Peer: TAPIR, a web server for the prediction of plant microRNA targets, including target mimics. Bioinformatics 26(12): 1566-1568 (2010)
50		Sofie Van Landeghem, Thomas Abeel, Yvan Saeys, Yves Van de Peer: Discriminative and informative features for biomolecular text mining with ensemble feature selection. Bioinformatics 26(18): (2010)
49		Eric Bonnet, Tom Michoel, Yves Van de Peer: Prediction of a gene regulatory network linked to prostate cancer from gene expression, microRNA and clinical data. Bioinformatics 26(18): (2010)
48		Thomas Abeel, Thibault Helleputte, Yves Van de Peer, Pierre Dupont, Yvan Saeys: Robust biomarker identification for cancer diagnosis with ensemble feature selection methods. Bioinformatics 26(3): 392-398 (2010)
47		Yvan Saeys, Sofie Van Landeghem, Yves Van de Peer: Event based text mining for integrated network construction. Journal of Machine Learning Research - Proceedings Track 8: 112-121 (2010)
	2009
46		G. Baele, Nicolas Bredeche, Evert Haasdijk, Steven Maere, N. Michiels, Yves Van de Peer, Thomas Schmickl, C. Schwarzer, Ronald Thenius: Open-ended on-board Evolutionary Robotics for robot swarms. IEEE Congress on Evolutionary Computation 2009: 1123-1130
45		Thomas Abeel, Yves Van de Peer, Yvan Saeys: Toward a gold standard for promoter prediction evaluation. Bioinformatics 25(12): (2009)
44		Anagha Joshi, Riet De Smet, Kathleen Marchal, Yves Van de Peer, Tom Michoel: Module networks revisited: computational assessment and prioritization of model predictions. Bioinformatics 25(4): 490-496 (2009)
43		Thomas Abeel, Yves Van de Peer, Yvan Saeys: Java-ML: A Machine Learning Library. Journal of Machine Learning Research 10: 931-934 (2009)
	2008
42		Yvan Saeys, Thomas Abeel, Yves Van de Peer: Robust Feature Selection Using Ensemble Feature Selection Techniques. ECML/PKDD (2) 2008: 313-325
41		Thomas Abeel, Yvan Saeys, Pierre Rouzé, Yves Van de Peer: ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles. ISMB 2008: 24-31
40		Rubén Armañanzas, Iñaki Inza, Roberto Santana, Yvan Saeys, Jose Luis Flores, Jose Antonio Lozano, Yves Van de Peer, Rosa Blanco, Víctor Robles, Concha Bielza, Pedro Larrañaga: A review of estimation of distribution algorithms in bioinformatics. BioData Mining 1: (2008)
39		Cedric Simillion, Koen Janssens, Lieven Sterck, Yves Van de Peer: i-ADHoRe 2.0: an improved tool to detect degenerated genomic homology using genomic profiles. Bioinformatics 24(1): 127-128 (2008)
38		Michiel Van Bel, Yvan Saeys, Yves Van de Peer: FunSiP: a modular and extensible classifier for the prediction of functional sites in DNA. Bioinformatics 24(13): 1532-1533 (2008)
37		Athanasia C. Tzika, Raphaël Helaers, Yves Van de Peer, Michel C. Milinkovitch: MANTIS: a phylogenetic framework for multi-species genome comparisons. Bioinformatics 24(2): 151-157 (2008)
36		Anagha Joshi, Yves Van de Peer, Tom Michoel: Analysis of a Gibbs sampler method for model-based clustering of gene expression data. Bioinformatics 24(2): 176-183 (2008)
35		Yvan Saeys, Huan Liu, Iñaki Inza, Louis Wehenkel, Yves Van de Peer: Preface. Journal of Machine Learning Research - Proceedings Track 4: 1-4 (2008)
	2007
34		Yvan Saeys, Thomas Abeel, Sven Degroeve, Yves Van de Peer: Translation initiation site prediction on a genomic scale: beauty in simplicity. ISMB/ECCB (Supplement of Bioinformatics) 2007: 418-423
33		Isis Bonet, María M. García, Yvan Saeys, Yves Van de Peer, Ricardo Grau Ábalo: Predicting Human Immunodeficiency Virus (HIV) Drug Resistance Using Recurrent Neural Networks. IWINAC (1) 2007: 234-243
32		Tineke Casneuf, Yves Van de Peer, Wolfgang Huber: In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation. BMC Bioinformatics 8: (2007)
31		Tom Michoel, Steven Maere, Eric Bonnet, Anagha Joshi, Yvan Saeys, Tim Van den Bulcke, Koenraad Van Leemput, Piet van Remortel, Martin Kuiper, Kathleen Marchal, Yves Van de Peer: Validating module network learning algorithms using simulated data. BMC Bioinformatics 8(S-2): (2007)
30		Yvan Saeys, Pierre Rouzé, Yves Van de Peer: In search of the small ones: improved prediction of short exons in vertebrates, plants, fungi and protists. Bioinformatics 23(4): 414-420 (2007)
	2006
29		Isis Bonet, Yvan Saeys, Ricardo Grau Ábalo, María M. García, Robersy Sanchez, Yves Van de Peer: Feature Extraction Using Clustering of Protein. CIARP 2006: 614-623
28		Philippe Faes, Bram Minnaert, Mark Christiaens, Eric Bonnet, Yvan Saeys, Dirk Stroobandt, Yves Van de Peer: Scalable hardware accelerator for comparing DNA and protein sequences. Infoscale 2006: 33
27		Yvan Saeys, Yves Van de Peer: Enhancing Coding Potential Prediction for Short Sequences Using Complementary Sequence Features and Feature Selection. KDECB 2006: 107-118
	2005
26		Sven Degroeve, Yvan Saeys, Bernard De Baets, Pierre Rouzé, Yves Van de Peer: SpliceMachine: predicting splice sites from high-dimensional local context representations. Bioinformatics 21(8): 1332-1338 (2005)
	2004
25		Yvan Saeys, Sven Degroeve, Yves Van de Peer: Digging into Acceptor Splice Site Prediction: An Iterative Feature Selection Approach. PKDD 2004: 386-397
24		Yvan Saeys, Sven Degroeve, Dirk Aeyels, Pierre Rouzé, Yves Van de Peer: Feature selection for splice site prediction: A new method using EDA-based feature ranking. BMC Bioinformatics 5: 64 (2004)
23		Eric Bonnet, Jan Wuyts, Pierre Rouzé, Yves Van de Peer: Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences. Bioinformatics 20(17): 2911-2917 (2004)
22		Jan Wuyts, Guy Perrière, Yves Van de Peer: The European ribosomal RNA database. Nucleic Acids Research 32(Database-Issue): 101-103 (2004)
	2003
21		Yvan Saeys, Sven Degroeve, Dirk Aeyels, Yves Van de Peer, Pierre Rouzé: Fast feature selection using a simple estimation of distribution algorithm: a case study on splice site prediction. ECCB 2003: 179-188
20		Stephane Rombauts, Yves Van de Peer, Pierre Rouzé: AFLPinSilico, simulating AFLP fingerprints. Bioinformatics 19(6): 776-777 (2003)
	2002
19		Sven Degroeve, Bernard De Baets, Yves Van de Peer, Pierre Rouzé: Feature subset selection for splice site prediction. ECCB 2002: 75-83
18		Yves Van de Peer, John Shawe-Taylor, Jayabalan Joseph, Axel Meyer: Wanda: a database of duplicated fish genes. Nucleic Acids Research 30(1): 109-112 (2002)
17		Jan Wuyts, Yves Van de Peer, Tina Winkelmans, Rupert De Wachter: The European database on small subunit ribosomal RNA. Nucleic Acids Research 30(1): 183-185 (2002)
16		Magali Lescot, Patrice Déhais, Gert Thijs, Kathleen Marchal, Yves Moreau, Yves Van de Peer, Pierre Rouzé, Stephane Rombauts: PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Research 30(1): 325-327 (2002)
	2001
15		Jan Wuyts, Peter De Rijk, Yves Van de Peer, Tina Winkelmans, Rupert De Wachter: The European Large Subunit Ribosomal RNA Database. Nucleic Acids Research 29(1): 175-177 (2001)
	2000
14		Yves Van de Peer, Peter De Rijk, Jan Wuyts, Tina Winkelmans, Rupert De Wachter: The European Small Subunit Ribosomal RNA database. Nucleic Acids Research 28(1): 175-176 (2000)
13		Peter De Rijk, Jan Wuyts, Yves Van de Peer, Tina Winkelmans, Rupert De Wachter: The European Large Subunit Ribosomal RNA database. Nucleic Acids Research 28(1): 177-178 (2000)
	1999
12		Peter De Rijk, Elmar Robbrecht, Sybren de Hoog, An Caers, Yves Van de Peer, Rupert De Wachter: Database on the structure of large subunit ribosomal RNA. Nucleic Acids Research 27(1): 174-178 (1999)
11		Yves Van de Peer, Elmar Robbrecht, Sybren de Hoog, An Caers, Peter De Rijk, Rupert De Wachter: Database on the structure of small subunit ribosomal RNA. Nucleic Acids Research 27(1): 179-183 (1999)
	1998
10		Yves Van de Peer, An Caers, Peter De Rijk, Rupert De Wachter: Database on the structure of small ribosomal subunit RNA. Nucleic Acids Research 26(1): 179-182 (1998)
9		Peter De Rijk, An Caers, Yves Van de Peer, Rupert De Wachter: Database on the structure of large ribosomal subunit RNA. Nucleic Acids Research 26(1): 183-186 (1998)
	1997
8		Yves Van de Peer, Rupert De Wachter: Construction of evolutionary distance trees with TREECON for Windows: accounting for variation in nucleotide substitution rate among sites. Computer Applications in the Biosciences 13(3): 227-230 (1997)
7		Yves Van de Peer, Jan Jansen, Peter De Rijk, Rupert De Wachter: Database on the structure of small ribosomal subunit RNA. Nucleic Acids Research 25(1): 111-116 (1997)
6		Peter De Rijk, Yves Van de Peer, Rupert De Wachter: Database on the structure of large ribosomal subunit RNA. Nucleic Acids Research 25(1): 117-122 (1997)
	1996
5		Yves Van de Peer, Stefan Nicolaï, Peter De Rijk, Rupert De Wachter: Database on the structure of small ribosomal subunit RNA. Nucleic Acids Research 24(1): 86-91 (1996)
4		Peter De Rijk, Yves Van de Peer, Rupert De Wachter: Database on the structure of large ribosomal subunit RNA. Nucleic Acids Research 24(1): 92-97 (1996)
	1994
3		Yves Van de Peer, Rupert De Wachter: TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Computer Applications in the Biosciences 10(5): 569-570 (1994)
	1993
2		Yves Van de Peer, Rupert De Wachter: TREECON: a software package for the construction and drawing of evolutionary trees. Computer Applications in the Biosciences 9(2): 177-182 (1993)
1		Jean-Marc Neefs, Yves Van de Peer, Peter De Rijk, Sabine Chapelle, Rupert De Wachter: Compilation of small ribosomal subunit RNA structures. Nucleic Acids Research 21(13): 3025-3049 (1993)

Coauthor Index

1	Ricardo Grau Ábalo	[29] [33]
2	Thomas Abeel	[34] [41] [42] [43] [45] [48] [50]
3	Dirk Aeyels	[21] [24]
4	Rubén Armañanzas	[40] [52]
5	Pieter Audenaert	[55]
6	G. Baele	[46]
7	Bernard De Baets	[19] [26] [53]
8	Michiel Van Bel	[38]
9	Concha Bielza	[40] [52]
10	Kenny Billiau	[51]
11	Rosa Blanco	[40]
12	Isis Bonet	[29] [33]
13	Eric Bonnet	[23] [28] [31] [49] [51]
14	Nicolas Bredeche	[46]
15	Florian Brondel	[55]
16	Tim Van den Bulcke	[31]
17	An Caers	[9] [10] [11] [12]
18	Tineke Casneuf	[32]
19	Sabine Chapelle	[1]
20	Mark Christiaens	[28]
21	Sven Degroeve	[19] [21] [24] [25] [26] [34]
22	Patrice Déhais	[16]
23	Piet Demeester	[54] [55]
24	Bart Dhoedt	[54]
25	Pierre Dupont	[48]
26	Philippe Faes	[28]
27	Jose Luis Flores	[40]
28	Jan Fostier	[54]
29	María M. García	[29] [33]
30	Miguel García-Torres	[52]
31	Evert Haasdijk	[46]
32	Ying He	[51]
33	Raphaël Helaers	[37]
34	Thibault Helleputte	[48]
35	Sybren de Hoog	[11] [12]
36	Wolfgang Huber	[32]
37	Iñaki Inza	[35] [40] [52]
38	Jan Jansen	[7]
39	Koen Janssens	[39]
40	Jayabalan Joseph	[18]
41	Anagha Joshi	[31] [36] [44]
42	Martin Kuiper (Martin T. R. Kuiper)	[31]
43	Sofie Van Landeghem	[47] [50] [53]
44	Pedro Larrañaga	[40] [52]
45	Koenraad Van Leemput (Koen Van Leemput)	[31]
46	Magali Lescot	[16]
47	Huan Liu	[35]
48	José Antonio Lozano (Jose Antonio Lozano)	[40]
49	Steven Maere	[31] [46]
50	Kathleen Marchal	[16] [31] [44]
51	Axel Meyer	[18]
52	N. Michiels	[46]
53	Tom Michoel	[31] [36] [44] [49] [55]
54	Michel C. Milinkovitch	[37]
55	Bram Minnaert	[28]
56	Yves Moreau	[16]
57	Jean-Marc Neefs	[1]
58	Stefan Nicolaï	[5]
59	Thomas Van Parys	[55]
60	Guy Perrière	[22]
61	Mario Pickavet	[55]
62	Sebastian Proost	[54]
63	Piet van Remortel	[31]
64	Peter De Rijk	[1] [4] [5] [6] [7] [9] [10] [11] [12] [13] [14] [15]
65	Elmar Robbrecht	[11] [12]
66	Víctor Robles (Victor Robles, Víctor Robles Forcada)	[40]
67	Stephane Rombauts	[16] [20]
68	Pierre Rouzé	[16] [19] [20] [21] [23] [24] [26] [30] [41]
69	Yvan Saeys	[21] [24] [25] [26] [27] [28] [29] [30] [31] [33] [34] [35] [38] [40] [41] [42] [43] [45] [47] [48] [50] [52] [53] [54]
70	Robersy Sanchez	[29]
71	Roberto Santana	[40]
72	Thomas Schmickl	[46]
73	C. Schwarzer	[46]
74	John Shawe-Taylor	[18]
75	Cedric Simillion	[39]
76	Riet De Smet	[44]
77	Lieven Sterck	[39]
78	Dirk Stroobandt	[28]
79	Ronald Thenius	[46]
80	Gert Thijs	[16]
81	Athanasia C. Tzika	[37]
82	Klaas Vandepoele	[54]
83	Rupert De Wachter	[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [17]
84	Louis Wehenkel	[35]
85	Tina Winkelmans	[13] [14] [15] [17]
86	Jan Wuyts	[13] [14] [15] [17] [22] [23]

Colors in the list of coauthors

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