Pavel A. Pevzner

	2009
91		Qian Peng, Max A. Alekseyev, Glenn Tesler, Pavel A. Pevzner: Decoding Synteny Blocks and Large-Scale Duplications in Mammalian and Plant Genomes. WABI 2009: 220-232
	2008
90		Nuno Bandeira, Jesper V. Olsen, Matthias Mann, Pavel A. Pevzner: Multi-spectra peptide sequencing and its applications to multistage mass spectrometry. ISMB 2008: 416-423
89		Nuno Bandeira, Julio Ng, Dario Meluzzi, Roger G. Linington, Pieter Dorrestein, Pavel A. Pevzner: De Novo Sequencing of Nonribosomal Peptides. RECOMB 2008: 181-195
88		Max A. Alekseyev, Pavel A. Pevzner: Multi-break rearrangements and chromosomal evolution. Theor. Comput. Sci. 395(2-3): 193-202 (2008)
	2007
87		Pavel A. Pevzner: Protein Identification via Spectral Networks Analysis. APBC 2007: 5
86		Max A. Alekseyev, Pavel A. Pevzner: Whole genome duplications, multi-break rearrangements, and genome halving problem. SODA 2007: 665-679
85		Pavel A. Pevzner: Shotgun Protein Sequencing. WABI 2007: 1
84		Sorin Istrail, Pavel A. Pevzner, Ron Shamir: Preface. Discrete Applied Mathematics 155(6-7): 673-674 (2007)
83		Degui Zhi, Uri Keich, Pavel A. Pevzner, Steffen Heber, Haixu Tang: Correcting Base-Assignment Errors in Repeat Regions of Shotgun Assembly. IEEE/ACM Trans. Comput. Biology Bioinform. 4(1): 54-64 (2007)
82		Max A. Alekseyev, Pavel A. Pevzner: Colored de Bruijn Graphs and the Genome Halving Problem. IEEE/ACM Trans. Comput. Biology Bioinform. 4(1): 98-107 (2007)
81		Richard M. Karp, Ming Li, Pavel A. Pevzner, Ron Shamir: Special issue on computational molecular biology. J. Comput. Syst. Sci. 73(7): 1023 (2007)
80		Max A. Alekseyev, Pavel A. Pevzner: Whole Genome Duplications and Contracted Breakpoint Graphs. SIAM J. Comput. 36(6): 1748-1763 (2007)
	2006
79		Alberto Apostolico, Concettina Guerra, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman: Research in Computational Molecular Biology, 10th Annual International Conference, RECOMB 2006, Venice, Italy, April 2-5, 2006, Proceedings Springer 2006
78		Ket Fah Chong, Kang Ning, Hon Wai Leong, Pavel A. Pevzner: Characterization of Multi-Charge Mass Spectra for Peptide Sequencing. APBC 2006: 109-119
77		Neil C. Jones, Pavel A. Pevzner: Comparative genomics reveals unusually long motifs in mammalian genomes. ISMB (Supplement of Bioinformatics) 2006: 236-242
76		Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel A. Pevzner: A New Approach to Protein Identification. RECOMB 2006: 363-378
75		Degui Zhi, S. Sri Krishna, Haibo Cao, Pavel A. Pevzner, Adam Godzik: Representing and comparing protein structures as paths in three-dimensional space. BMC Bioinformatics 7: 460 (2006)
74		Ket Fah Chong, Kang Ning, Hon Wai Leong, Pavel A. Pevzner: Modeling and Characterization of Multi-charge Mass Spectra for Peptide Sequencing. J. Bioinformatics and Computational Biology 4(6): 1329-1352 (2006)
	2005
73		Satoru Miyano, Jill P. Mesirov, Simon Kasif, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman: Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings Springer 2005
72		Dekel Tsur, Stephen Tanner, Ebrahim Zandi, Vineet Bafna, Pavel A. Pevzner: Identification of Post-Translational Modifications via Blind Search of Mass-Spectra. CSB 2005: 157-166
71		Alkes L. Price, Neil C. Jones, Pavel A. Pevzner: De novo identification of repeat families in large genomes. ISMB (Supplement of Bioinformatics) 2005: 351-358
70		Ari Frank, Stephen Tanner, Pavel A. Pevzner: Peptide Sequence Tags for Fast Database Search in Mass-Spectrometry. RECOMB 2005: 326-341
69		Richard M. Karp, Ming Li, Pavel A. Pevzner, Ron Shamir: Guest Editors' foreword. J. Comput. Syst. Sci. 70(3): 283- (2005)
	2004
68		Max A. Alekseyev, Pavel A. Pevzner: Genome Halving Problem Revisited. FSTTCS 2004: 1-15
67		Benjamin J. Raphael, Pavel A. Pevzner: Reconstructing tumor amplisomes. ISMB/ECCB (Supplement of Bioinformatics) 2004: 265-273
66		Pavel A. Pevzner, Haixu Tang, Glenn Tesler: De novo repeat classification and fragment assembly. RECOMB 2004: 213-222
65		Mark Chaisson, Pavel A. Pevzner, Haixu Tang: Fragment assembly with short reads. Bioinformatics 20(13): 2067-2074 (2004)
64		Pavel A. Pevzner: Educating biologists in the 21st century: bioinformatics scientists versus bioinformatics technicians. Bioinformatics 20(14): 2159-2161 (2004)
63		Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky: Scalable Heuristics for Design of DNA Probe Arrays. Journal of Computational Biology 11(2/3): 429-447 (2004)
	2003
62		Alkes L. Price, Sriram Ramabhadran, Pavel A. Pevzner: Finding subtle motifs by branching from sample strings. ECCB 2003: 149-155
61		Benjamin J. Raphael, Stanislav Volik, Colin Collins, Pavel A. Pevzner: Reconstructing tumor genome architectures. ECCB 2003: 162-171
60		Eleazar Eskin, Uri Keich, Mikhail S. Gelfand, Pavel A. Pevzner: Genome-Wide Analysis of Bacterial Promoter Regions. Pacific Symposium on Biocomputing 2003: 29-40
59		Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky: Engineering a scalable placement heuristic for DNA probe arrays. RECOMB 2003: 148-156
58		Pavel A. Pevzner, Glenn Tesler: Transforming men into mice: the Nadeau-Taylor chromosomal breakage model revisited. RECOMB 2003: 247-256
	2002
57		Steffen Heber, Max A. Alekseyev, Sing-Hoi Sze, Haixu Tang, Pavel A. Pevzner: Splicing graphs and EST assembly problem. ISMB 2002: 181-188
56		Eleazar Eskin, Pavel A. Pevzner: Finding composite regulatory patterns in DNA sequences. ISMB 2002: 354-363
55		Zufar Mulyukov, Pavel A. Pevzner: EULER-PCR: Finishing Experiments for Repeat Resolution. Pacific Symposium on Biocomputing 2002: 199-210
54		Sing-Hoi Sze, Mikhail S. Gelfand, Pavel A. Pevzner: Finding Weak Motifs in DNA Sequences. Pacific Symposium on Biocomputing 2002: 235-246
53		Uri Keich, Pavel A. Pevzner: Finding motifs in the twilight zone. RECOMB 2002: 195-204
52		Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky: Border Length Minimization in DNA Array Design. WABI 2002: 435-448
51		Uri Keich, Pavel A. Pevzner: Finding motifs in the twilight zone. Bioinformatics 18(10): 1374-1381 (2002)
50		Uri Keich, Pavel A. Pevzner: U Subtle motifs: defining the limits of motif finding algorithms. Bioinformatics 18(10): 1382-1390 (2002)
49		Ming Li, Pavel A. Pevzner, Ron Shamir: Foreword. J. Comput. Syst. Sci. 65(3): 441 (2002)
	2001
48		Pavel A. Pevzner, Haixu Tang: Fragment assembly with double-barreled data. ISMB (Supplement of Bioinformatics) 2001: 225-233
47		Abdullah N. Arslan, Ömer Egecioglu, Pavel A. Pevzner: A new approach to sequence comparison: normalized sequence alignment. RECOMB 2001: 2-11
46		Pavel A. Pevzner, Haixu Tang, Michael S. Waterman: A new approach to fragment assembly in DNA sequencing. RECOMB 2001: 256-267
45		Abdullah N. Arslan, Ömer Egecioglu, Pavel A. Pevzner: A new approach to sequence comparison: normalized sequence alignment. Bioinformatics 17(4): 327-337 (2001)
44		Leslie Ann Goldberg, Paul W. Goldberg, Mike Paterson, Pavel A. Pevzner, Süleyman Cenk Sahinalp, Elizabeth Sweedyk: The Complexity of Gene Placement. J. Algorithms 41(2): 225-243 (2001)
	2000
43		Pavel A. Pevzner, Sing-Hoi Sze: Combinatorial Approaches to Finding Subtle Signals in DNA Sequences. ISMB 2000: 269-278
42		Pavel A. Pevzner, Vlado Dancík, Chris L. Tang: Mutation-tolerant protein identification by mass-spectrometry. RECOMB 2000: 231-236
41		Sorin Istrail, Pavel A. Pevzner, Ron Shamir: Foreword. Discrete Applied Mathematics 104(1-3): 1-2 (2000)
40		Pavel A. Pevzner, Vlado Dancík, Chris L. Tang: Mutation-Tolerant Protein Identification by Mass Spectrometry. Journal of Computational Biology 7(6): 777-787 (2000)
	1999
39		Earl Hubbell, Pavel A. Pevzner: Fidelity Probes for DNA Arrays. ISMB 1999: 113-117
38		Leslie Ann Goldberg, Paul W. Goldberg, Mike Paterson, Pavel A. Pevzner, Süleyman Cenk Sahinalp, Elizabeth Sweedyk: The Complexity of Gene Placement. SODA 1999: 386-395
37		Sridhar Hannenhalli, Pavel A. Pevzner: Transforming Cabbage into Turnip: Polynomial Algorithm for Sorting Signed Permutations by Reversals. J. ACM 46(1): 1-27 (1999)
36		Vlado Dancík, Theresa A. Addona, Karl R. Clauser, James E. Vath, Pavel A. Pevzner: De Novo Peptide Sequencing via Tandem Mass Spectrometry. Journal of Computational Biology 6(3/4): (1999)
	1998
35		Andrey A. Mironov, Pavel A. Pevzner: SST versus EST in Gene Recognition (Invited Paper). SPIRE 1998: 60-64
34		Sing-Hoi Sze, Mikhail A. Roytberg, Mikhail S. Gelfand, Andrey A. Mironov, Tatiana V. Astakhova, Pavel A. Pevzner: Algorithms and software for support of gene identification experiments. Bioinformatics 14(1): 14-19 (1998)
33		Sorin Istrail, Pavel A. Pevzner, Ron Shamir: Foreword. Discrete Applied Mathematics 88(1-3): 3-6 (1998)
32		Vineet Bafna, Pavel A. Pevzner: Sorting by Transpositions. SIAM J. Discrete Math. 11(2): 224-240 (1998)
	1997
31		Guorong Xu, Sing-Hoi Sze, Cheng-Pin Liu, Pavel A. Pevzner, Norman Arnheim: Gene Hunting without Sequencing Genomis Clones: the "Twenty Questions" game with genes. German Conference on Bioinformatics 1997: 17
30		Sing-Hoi Sze, Pavel A. Pevzner: Las Vegas algorithms for gene recognition: suboptimal and error-tolerant spliced alignment. RECOMB 1997: 300-309
29		I. Belyi, Pavel A. Pevzner: Software for DNA sequencing by hybridization. Computer Applications in the Biosciences 13(2): 205-210 (1997)
28		Michael S. Waterman, Sorin Istrail, Pavel A. Pevzner: Selected Papers from RECOMB'97 - Preface. Journal of Computational Biology 4(3): 215-216 (1997)
27		Sing-Hoi Sze, Pavel A. Pevzner: Las Vegas Algorithms for Gene Recognition: Suboptimal and Error-Tolerant Spliced Alignment. Journal of Computational Biology 4(3): 297-310 (1997)
26		Vineet Bafna, Eugene L. Lawler, Pavel A. Pevzner: Approximation Algorithms for Multiple Sequence Alignment. Theor. Comput. Sci. 182(1-2): 233-244 (1997)
	1996
25		Mikhail S. Gelfand, Andrey A. Mironov, Pavel A. Pevzner: Spliced Alignment: A New Approach to Gene Recognition. CPM 1996: 141-158
24		Sridhar Hannenhalli, Pavel A. Pevzner: To Cut... or Not to Cut (Applications of Comparative Physical Maps in Molecular Evolution). SODA 1996: 304-313
23		Sridhar Hannenhalli, W. Feldman, H. F. Lewis, Steven Skiena, Pavel A. Pevzner: Positional sequencing by hybridization. Computer Applications in the Biosciences 12(1): 19-24 (1996)
22		Vineet Bafna, Pavel A. Pevzner: Genome Rearrangements and Sorting by Reversals. SIAM J. Comput. 25(2): 272-289 (1996)
	1995
21		Sridhar Hannenhalli, Pavel A. Pevzner: Transforming Men into Mice (Polynomial Algorithm for Genomic Distance Problem). FOCS 1995: 581-592
20		Pavel A. Pevzner, Michael S. Waterman: Open Combinatorial Problems in Computational Molecular Biology. ISTCS 1995: 158-173
19		Vineet Bafna, Pavel A. Pevzner: Sorting Permutations by Transpositions. SODA 1995: 614-623
18		Sridhar Hannenhalli, Pavel A. Pevzner: Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals. STOC 1995: 178-189
17		Sridhar Hannenhalli, Pavel A. Pevzner: Towards a Computational Theory of Genome Rearrangements. Computer Science Today 1995: 184-202
16		Pavel A. Pevzner, Michael S. Waterman: Multiple Filtration and Approximate Pattern Matching. Algorithmica 13(1/2): 135-154 (1995)
15		Pavel A. Pevzner: DNA Physical Mapping and Alternating Eulerian Cycles in Colored Graphs. Algorithmica 13(1/2): 77-105 (1995)
14		Andrey A. Mironov, N. N. Alexandrov, N. Yu. Bogodarova, A. Grigorjev, V. F. Lebedev, L. V. Lunovskaya, M. E. Truchan, Pavel A. Pevzner: DNASUN: a package of computer programs for the biotechnology laboratory. Computer Applications in the Biosciences 11(3): 331-335 (1995)
	1994
13		Vineet Bafna, Eugene L. Lawler, Pavel A. Pevzner: Approximation Algorithms for Multiple Sequence Alignment. CPM 1994: 43-53
12		Xiaoqiu Huang, Pavel A. Pevzner, Webb Miller: Parametric Recomuting in Alignment Graphs. CPM 1994: 87-101
11		Pavel A. Pevzner, Robert J. Lipshutz: Towards DNA Sequencing Chips. MFCS 1994: 143-158
10		Pavel A. Pevzner: Rearrangements of DNA Sequences and SBH. Computers & Chemistry 18(3): 221-223 (1994)
	1993
9		Pavel A. Pevzner, Michael S. Waterman: A Fast Filtration Algorithm for the Substring Matching Problem. CPM 1993: 197-214
8		Martin Vingron, Pavel A. Pevzner: Multiple Sequence Comparison and n-Dimensional Image Reconstruction. CPM 1993: 243-253
7		Vineet Bafna, Pavel A. Pevzner: Genome Rearrangements and Sorting by Reversals FOCS 1993: 148-157
	1992
6		Pavel A. Pevzner: Multiple Alignment with Guaranteed Error Bounds and Communication Cost. CPM 1992: 205-213
5		Pavel A. Pevzner, Michael S. Waterman: Matrix Longest Common Subsequence Problem, Duality and Hibert Bases. CPM 1992: 79-89
4		Pavel A. Pevzner: Statistical distance between texts and filtration methods in sequence comparison. Computer Applications in the Biosciences 8(2): 121-127 (1992)
3		Mikhail S. Gelfand, C. G. Kozhukhin, Pavel A. Pevzner: Extendable words in nucleotide sequences. Computer Applications in the Biosciences 8(2): 129-135 (1992)
2		Pavel A. Pevzner: Nucleotide Sequences Versus Markov Models. Computers & Chemistry 16(2): 103-106 (1992)
	1991
1		C. G. Kozhukhin, Pavel A. Pevzner: Genome inhomogeneity is determined mainly by WW and SS dinucleotides. Computer Applications in the Biosciences 7(1): 39-49 (1991)

Coauthor Index

1	Theresa A. Addona	[36]
2	Max A. Alekseyev	[57] [68] [80] [82] [86] [88] [91]
3	N. N. Alexandrov	[14]
4	Alberto Apostolico	[79]
5	Norman Arnheim	[31]
6	Abdullah N. Arslan	[45] [47]
7	Tatiana V. Astakhova	[34]
8	Vineet Bafna	[7] [13] [19] [22] [26] [32] [72]
9	Nuno Bandeira	[76] [89] [90]
10	I. Belyi	[29]
11	N. Yu. Bogodarova	[14]
12	Haibo Cao	[75]
13	Mark Chaisson	[65]
14	Ket Fah Chong	[74] [78]
15	Karl R. Clauser	[36]
16	Colin Collins	[61]
17	Vlado Dancík	[36] [40] [42]
18	Pieter Dorrestein	[89]
19	Ömer Egecioglu	[45] [47]
20	Eleazar Eskin	[56] [60]
21	W. Feldman	[23]
22	Ari Frank	[70] [76]
23	Mikhail S. Gelfand	[3] [25] [34] [54] [60]
24	Adam Godzik	[75]
25	Leslie Ann Goldberg	[38] [44]
26	Paul W. Goldberg	[38] [44]
27	A. Grigorjev	[14]
28	Concettina Guerra	[79]
29	Sridhar Hannenhalli	[17] [18] [21] [23] [24] [37]
30	Steffen Heber	[57] [83]
31	Xiaoqiu Huang	[12]
32	Earl Hubbell	[39]
33	Sorin Istrail	[28] [33] [41] [73] [79] [84]
34	Neil C. Jones	[71] [77]
35	Andrew B. Kahng	[52] [59] [63]
36	Richard M. Karp	[69] [81]
37	Simon Kasif	[73]
38	Uri Keich	[50] [51] [53] [60] [83]
39	C. G. Kozhukhin	[1] [3]
40	S. Sri Krishna	[75]
41	Eugene L. Lawler	[13] [26]
42	V. F. Lebedev	[14]
43	Hon Wai Leong (Hon-Wai Leong)	[74] [78]
44	H. F. Lewis	[23]
45	Ming Li	[49] [69] [81]
46	Roger G. Linington	[89]
47	Robert J. Lipshutz	[11]
48	Cheng-Pin Liu	[31]
49	L. V. Lunovskaya	[14]
50	Ion I. Mandoiu	[52] [59] [63]
51	Matthias Mann	[90]
52	Dario Meluzzi	[89]
53	Jill P. Mesirov	[73]
54	Webb Miller	[12]
55	Andrey A. Mironov	[14] [25] [34] [35]
56	Satoru Miyano	[73]
57	Zufar Mulyukov	[55]
58	Julio Ng	[89]
59	Kang Ning	[74] [78]
60	Jesper V. Olsen	[90]
61	Mike Paterson	[38] [44]
62	Qian Peng	[91]
63	Alkes L. Price	[62] [71]
64	Sriram Ramabhadran	[62]
65	Benjamin J. Raphael	[61] [67]
66	Sherief Reda	[52] [59] [63]
67	Mikhail A. Roytberg	[34]
68	Süleyman Cenk Sahinalp	[38] [44]
69	Ron Shamir	[33] [41] [49] [69] [81] [84]
70	Steven Skiena	[23]
71	Elizabeth Sweedyk	[38] [44]
72	Sing-Hoi Sze	[27] [30] [31] [34] [43] [54] [57]
73	Chris L. Tang	[40] [42]
74	Haixu Tang	[46] [48] [57] [65] [66] [83]
75	Stephen Tanner	[70] [72]
76	Glenn Tesler	[58] [66] [91]
77	M. E. Truchan	[14]
78	Dekel Tsur	[72] [76]
79	James E. Vath	[36]
80	Martin Vingron	[8]
81	Stanislav Volik	[61]
82	Michael S. Waterman	[5] [9] [16] [20] [28] [46] [73] [79]
83	Guorong Xu	[31]
84	Ebrahim Zandi	[72]
85	Alexander Zelikovsky	[52] [59] [63]
86	Degui Zhi	[75] [83]

Colors in the list of coauthors