Jan Prins

Jan F. Prins

	2012
49		Yan Huang, Yin Hu, Corbin D. Jones, James N. MacLeod, Derek Y. Chiang, Yufeng Liu, Jan F. Prins, Jinze Liu: A Robust Method for Transcript Quantification with RNA-seq Data. RECOMB 2012: 127-147
	2011
48		Darshan Singh, Christian F. Orellana, Yin Hu, Corbin D. Jones, Yufeng Liu, Derek Y. Chiang, Jinze Liu, Jan F. Prins: FDM: a graph-based statistical method to detect differential transcription using RNA-seq data. Bioinformatics 27(19): 2633-2640 (2011)
	2010
47		Yin Hu, Kai Wang, Xiaping He, Derek Y. Chiang, Jan F. Prins, Jinze Liu: A probabilistic framework for aligning paired-end RNA-seq data. Bioinformatics 26(16): 1950-1957 (2010)
46		Deepak Bandyopadhyay, Jun Huan, Jinze Liu, Jan Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha: Functional neighbors: inferring relationships between nonhomologous protein families using family-specific packing motifs. IEEE Transactions on Information Technology in Biomedicine 14(5): 1137-1143 (2010)
45		Stephen Olivier, Jan F. Prins: Comparison of OpenMP 3.0 and Other Task Parallel Frameworks on Unbalanced Task Graphs. International Journal of Parallel Programming 38(5-6): 341-360 (2010)
	2009
44		Stephen Olivier, Jan Prins: Evaluating OpenMP 3.0 Run Time Systems on Unbalanced Task Graphs. IWOMP 2009: 63-78
43		Deepak Bandyopadhyay, Jun Huan, Jan Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha: Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: I. Method development. Journal of Computer-Aided Molecular Design 23(11): 773-784 (2009)
42		Deepak Bandyopadhyay, Jun Huan, Jan Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha: Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: II. Case studies and applications. Journal of Computer-Aided Molecular Design 23(11): 785-797 (2009)
41		Michael Gschwind, Fred Gustavson, Jan F. Prins: High Performance Computing with the Cell Broadband Engine. Scientific Programming 17(1-2): 1-2 (2009)
	2008
40		Deepak Bandyopadhyay, Jun Huan, Jinze Liu, Jan Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha: Functional Neighbors: Inferring Relationships between Non-Homologous Protein Families Using Family-Specific Packing Motifs. BIBM 2008: 199-206
39		Stephen Olivier, Jan Prins: Scalable Dynamic Load Balancing Using UPC. ICPP 2008: 123-131
38		Qi Zhang, Wei Wang, Leonard McMillan, Jan Prins, Fernando Pardo-Manuel de Villena, David Threadgill: Genotype Sequence Segmentation: Handling Constraints and Noise. WABI 2008: 271-283
37		James Dinan, Stephen Olivier, Gerald Sabin, Jan Prins, P. Sadayappan, Chau-Wen Tseng: A message passing benchmark for unbalanced applications. Simulation Modelling Practice and Theory 16(9): 1177-1189 (2008)
	2007
36		James Dinan, Stephen Olivier, Gerald Sabin, Jan Prins, P. Sadayappan, Chau-Wen Tseng: Dynamic Load Balancing of Unbalanced Computations Using Message Passing. IPDPS 2007: 1-8
35		Stephen Olivier, Jan Prins, Jeff Derby, Ken V. Vu: Porting the GROMACS Molecular Dynamics Code to the Cell Processor. IPDPS 2007: 1-8
34		Jinze Liu, Qi Zhang, Wei Wang, Leonard McMillan, Jan Prins: PoClustering: Lossless Clustering of Dissimilarity Data. SDM 2007
	2006
33		Jinze Liu, Qi Zhang, Wei Wang, Leonard McMillan, Jan Prins: Clustering pair-wise dissimilarity data into partially ordered sets. KDD 2006: 637-642
32		Stephen Olivier, Jun Huan, Jinze Liu, Jan Prins, James Dinan, P. Sadayappan, Chau-Wen Tseng: UTS: An Unbalanced Tree Search Benchmark. LCPC 2006: 235-250
31		Jinze Liu, Susan Paulsen, Xing Sun, Wei Wang, Andrew B. Nobel, Jan Prins: Mining Approximate Frequent Itemsets In the Presence of Noise: Algorithm and Analysis. SDM 2006
30		Jun Huan, Jan Prins, Wei Wang: Local Structure Comparison of Proteins. Advances in Computers 68: 180-255 (2006)
	2005
29		Jinze Liu, Susan Paulsen, Wei Wang, Andrew B. Nobel, Jan Prins: Mining Approximate Frequent Itemsets from Noisy Data. ICDM 2005: 721-724
28		Jun Huan, Deepak Bandyopadhyay, Wei Wang, Jack Snoeyink, Jan Prins, Alexander Tropsha: Comparing Graph Representations of Protein Structure for Mining Family-Specific Residue-Based Packing Motifs. Journal of Computational Biology 12(6): 657-671 (2005)
	2004
27		Jun Huan, Wei Wang, Jan Prins, Jiong Yang: SPIN: mining maximal frequent subgraphs from graph databases. KDD 2004: 581-586
26		Jun Huan, Wei Wang, Anglina Washington, Jan Prins, Ruchir Shah, Alexander Tropsha: Accurate Classification of Protein Structural Families Using Coherent Subgraph Analysis. Pacific Symposium on Biocomputing 2004: 411-422
25		Jun Huan, Wei Wang, Deepak Bandyopadhyay, Jack Snoeyink, Jan Prins, Alexander Tropsha: Mining protein family specific residue packing patterns from protein structure graphs. RECOMB 2004: 308-315
	2003
24		Jun Huan, Jan Prins, Wei Wang, Todd J. Vision: Reconstruction of Ancestral Gene Order after Segmental Duplication and Gene Loss. CSB 2003: 484-485
23		Jun Huan, Wei Wang, Jan Prins: Efficient Mining of Frequent Subgraphs in the Presence of Isomorphism. ICDM 2003: 549-552
22		Konstantin Berlin, Jun Huan, Mary Jacob, Garima Kochhar, Jan Prins, William Pugh, P. Sadayappan, Jaime Spacco, Chau-Wen Tseng: Evaluating the Impact of Programming Language Features on the Performance of Parallel Applications on Cluster Architectures. LCPC 2003: 194-208
	2001
21		Samuel P. Midkiff, José E. Moreira, Manish Gupta, Siddhartha Chatterjee, Jeanne Ferrante, Jan Prins, William Pugh, Chau-Wen Tseng: Languages and Compilers for Parallel Computing, 13th International Workshop, LCPC 2000, Yorktown Heights, NY, USA, August 10-12, 2000, Revised Papers Springer 2001
	2000
20		James Riely, Jan Prins: Flattening Is an Improvement. SAS 2000: 360-376
19		Lars S. Nyland, Jan Prins, Allen Goldberg, Peter Mills: A Design Methodology for Data-Parallel Applications. IEEE Trans. Software Eng. 26(4): 293-314 (2000)
	1999
18		Siddhartha Chatterjee, Jan Prins, Larry Carter, Jeanne Ferrante, Zhiyuan Li, David C. Sehr, Pen-Chung Yew: Languages and Compilers for Parallel Computing, 11th International Workshop, LCPC'98, Chapel Hill, NC, USA, August 7-9, 1998, Proceedings Springer 1999
17		Jan Prins, Jan Hermans, Geoffrey Mann, Lars S. Nyland, Martin Simons: A virtual environment for steered molecular dynamics. Future Generation Comp. Syst. 15(4): 485-495 (1999)
16		Jan Prins, Siddhartha Chatterjee, Martin Simons: Irregular computations in Fortran - expression and implementation strategies. Scientific Programming 7(3-4): 313-326 (1999)
	1998
15		Lars S. Nyland, Jan Prins, Ru Huai Yun, Jan Hermans, Hye-Chung Kum, Lei Wang: Modeling Dynamic Load Balancing in Molecular Dynamics to Achieve Scalable Parallel Execution. IRREGULAR 1998: 356-365
14		Jan Prins, Siddhartha Chatterjee, Martin Simons: Expressing Irregular Computations in Modern Fortran Dialects. LCR 1998: 1-16
	1997
13		Rickard E. Faith, Lars S. Nyland, Jan Prins: KHEPERA: A System for Rapid Implementation of Domain Specific Languages. DSL 1997
12		Lars S. Nyland, Jan Prins, Ru Huai Yun, Jan Hermans, Hye-Chung Kum, Lei Wang: Achieving Scalable Parallel Molecular Dynamics Using Dynamic Spatial Domain Decomposition Techniques. J. Parallel Distrib. Comput. 47(2): 125-138 (1997)
	1996
11		Lars S. Nyland, Jan Prins, Allen Goldberg, Peter Mills, John H. Reif, Robert A. Wagner: A Refinement Methodology for Developing Data-Parallel Applications. Euro-Par, Vol. I 1996: 145-150
	1995
10		Daniel W. Palmer, Jan Prins, Siddhartha Chatterjee, Rickard E. Faith: Piecewise Execution of Nested Data-Parallel Programs. LCPC 1995: 346-361
	1993
9		Jan Prins, Daniel W. Palmer: Transforming High-Level Data-Parallel Programs into Vector Operations. PPOPP 1993: 119-128
	1992
8		Peter Mills, Lars S. Nyland, Jan Prins, John H. Reif: Prototyping N-Body Simulation in Proteus. IPPS 1992: 476-482
7		William L. Hightower, Jan Prins, John H. Reif: Implementations of Randomized Sorting on Large Parallel Machines. SPAA 1992: 158-167
	1991
6		Peter Mills, Lars S. Nyland, Jan Prins, John H. Reif, Robert A. Wagner: Prototyping parallel and distributed programs in Proteus. SPDP 1991: 26-34
	1989
5		Susan Horwitz, Jan Prins, Thomas W. Reps: Integrating Noninterfering Versions of Programs. ACM Trans. Program. Lang. Syst. 11(3): 345-387 (1989)
	1988
4		Susan Horwitz, Jan Prins, Thomas W. Reps: Integrating Non-Interfering Versions of Programs. POPL 1988: 133-145
3		Susan Horwitz, Jan Prins, Thomas W. Reps: On the Adequacy of Program Dependence Graphs for Representing Programs. POPL 1988: 146-157
2		Thomas W. Reps, Susan Horwitz, Jan Prins: Support for Integrating Program Variants in an Environment for Programming in the Large. SCM 1988: 197-216
	1987
1		David Gries, Jan Prins: McLaren's Masterpiece. Sci. Comput. Program. 8(2): 139-145 (1987)

Coauthor Index

1	Deepak Bandyopadhyay	[25] [28] [40] [42] [43] [46]
2	Konstantin Berlin	[22]
3	Larry Carter	[18]
4	Siddhartha Chatterjee	[10] [14] [16] [18] [21]
5	Derek Y. Chiang	[47] [48] [49]
6	Jeff Derby	[35]
7	James Dinan	[32] [36] [37]
8	Rickard E. Faith	[10] [13]
9	Jeanne Ferrante	[18] [21]
10	Allen Goldberg	[11] [19]
11	David Gries	[1]
12	Michael Gschwind	[41]
13	Manish Gupta	[21]
14	Fred Gustavson	[41]
15	Xiaping He	[47]
16	Jan Hermans	[12] [15] [17]
17	William L. Hightower	[7]
18	Susan Horwitz	[2] [3] [4] [5]
19	Yin Hu	[47] [48] [49]
20	Jun Huan (Luke Huan)	[22] [23] [24] [25] [26] [27] [28] [30] [32] [40] [42] [43] [46]
21	Yan Huang	[49]
22	Mary Jacob	[22]
23	Corbin D. Jones	[48] [49]
24	Garima Kochhar	[22]
25	Hye-Chung Kum (Hye-Chung (Monica) Kum)	[12] [15]
26	Zhiyuan Li	[18]
27	Jinze Liu	[29] [31] [32] [33] [34] [40] [46] [47] [48] [49]
28	Yufeng Liu	[48] [49]
29	James N. MacLeod	[49]
30	Geoffrey Mann	[17]
31	Leonard McMillan	[33] [34] [38]
32	Samuel P. Midkiff	[21]
33	Peter Mills	[6] [8] [11] [19]
34	José E. Moreira	[21]
35	Andrew B. Nobel	[29] [31]
36	Lars S. Nyland	[6] [8] [11] [12] [13] [15] [17] [19]
37	Stephen Olivier	[32] [35] [36] [37] [39] [44] [45]
38	Christian F. Orellana	[48]
39	Daniel W. Palmer	[9] [10]
40	Susan Paulsen	[29] [31]
41	William Pugh	[21] [22]
42	John H. Reif	[6] [7] [8] [11]
43	Thomas W. Reps	[2] [3] [4] [5]
44	James Riely	[20]
45	Gerald Sabin	[36] [37]
46	P. Sadayappan (Ponnuswamy Sadayappan)	[22] [32] [36] [37]
47	David C. Sehr	[18]
48	Ruchir Shah	[26]
49	Martin Simons	[14] [16] [17]
50	Darshan Singh	[48]
51	Jack Snoeyink	[25] [28] [40] [42] [43] [46]
52	Jaime Spacco	[22]
53	Xing Sun	[31]
54	David Threadgill	[38]
55	Alexander Tropsha	[25] [26] [28] [40] [42] [43] [46]
56	Chau-Wen Tseng	[21] [22] [32] [36] [37]
57	Fernando Pardo-Manuel de Villena	[38]
58	Todd J. Vision	[24]
59	Ken V. Vu	[35]
60	Robert A. Wagner	[6] [11]
61	Kai Wang	[47]
62	Lei Wang	[12] [15]
63	Wei Wang	[23] [24] [25] [26] [27] [28] [29] [30] [31] [33] [34] [38] [40] [42] [43] [46]
64	Anglina Washington	[26]
65	Jiong Yang	[27]
66	Pen-Chung Yew	[18]
67	Ru Huai Yun	[12] [15]
68	Qi Zhang	[33] [34] [38]

Colors in the list of coauthors

Last update Sat May 26 02:31:23 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page