Sampo Pyysalo

	2012
26		Pontus Stenetorp, Sampo Pyysalo, Goran Topic, Tomoko Ohta, Sophia Ananiadou, Jun-ichi Tsujii: brat: a Web-based Tool for NLP-Assisted Text Annotation. EACL 2012: 102-107
	2011
25		Jin-Dong Kim, Tomoko Ohta, Sampo Pyysalo, Yoshinobu Kano, Jun-ichi Tsujii: Extracting Bio-molecular Events from literature - the BioNLP'09 Shared Task. Computational Intelligence 27(4): 513-540 (2011)
	2010
24		Nigel Collier, Udo Hahn, Dietrich Rebholz-Schuhmann, Fabio Rinaldi, Sampo Pyysalo: Proceedings of the Fourth International Symposium for Semantic Mining in Biomedicine, Cambridge, United Kingdom, October, 2010 CEUR-WS.org 2010
23		Makoto Miwa, Sampo Pyysalo, Tadayoshi Hara, Jun-ichi Tsujii: Evaluating Dependency Representations for Event Extraction. COLING 2010: 779-787
22		Sampo Pyysalo, Tomoko Ohta, Jun-ichi Tsujii: An Analysis of gene/protein associations at PubMed scale. Semantic Mining in Biomedicine 2010
21		Robert Hoehndorf, Axel-Cyrille Ngonga Ngomo, Sampo Pyysalo, Tomoko Ohta, Anika Oellrich, Dietrich Rebholz-Schuhmann: Applying ontology design patterns to the implementation of relations in GENIA. Semantic Mining in Biomedicine 2010
20		Tomoko Ohta, Sampo Pyysalo, Makoto Miwa, Jun-ichi Tsujii: Event extraction for DNA methylation. Semantic Mining in Biomedicine 2010
19		Jari Björne, Filip Ginter, Sampo Pyysalo, Jun-ichi Tsujii, Tapio Salakoski: Complex event extraction at PubMed scale. Bioinformatics [ISMB] 26(12): 382-390 (2010)
18		Yue Wang, Jin-Dong Kim, Rune Sætre, Sampo Pyysalo, Tomoko Ohta, Jun-ichi Tsujii: Improving the Inter-Corpora Compatibility for protein Annotations. J. Bioinformatics and Computational Biology 8(5): 901-916 (2010)
17		Tomoko Ohta, Sampo Pyysalo, Jin-Dong Kim, Jun-ichi Tsujii: A Re-Evaluation of Biomedical Named Entity-Term Relations. J. Bioinformatics and Computational Biology 8(5): 917-928 (2010)
	2009
16		Yue Wang, Jin-Dong Kim, Rune Sætre, Sampo Pyysalo, Jun-ichi Tsujii: Investigating heterogeneous protein annotations toward cross-corpora utilization. BMC Bioinformatics 10: 403 (2009)
15		Filip Ginter, Hanna Suominen, Sampo Pyysalo, Tapio Salakoski: Combining hidden Markov models and latent semantic analysis for topic segmentation and labeling: Method and clinical application. I. J. Medical Informatics 78(12): 1-6 (2009)
14		Veronika Laippala, Filip Ginter, Sampo Pyysalo, Tapio Salakoski: Towards automated processing of clinical Finnish: Sublanguage analysis and a rule-based parser. I. J. Medical Informatics 78(12): 7-12 (2009)
13		Tapio Pahikkala, Sampo Pyysalo, Jorma Boberg, Jouni Järvinen, Tapio Salakoski: Matrix representations, linear transformations, and kernels for disambiguation in natural language. Machine Learning 74(2): 133-158 (2009)
	2008
12		Antti Airola, Sampo Pyysalo, Jari Björne, Tapio Pahikkala, Filip Ginter, Tapio Salakoski: All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning. BMC Bioinformatics 9(S-11): (2008)
11		Sampo Pyysalo, Antti Airola, Juho Heimonen, Jari Björne, Filip Ginter, Tapio Salakoski: Comparative analysis of five protein-protein interaction corpora. BMC Bioinformatics 9(S-3): (2008)
	2007
10		Sampo Pyysalo, Filip Ginter, Juho Heimonen, Jari Björne, Jorma Boberg, Jouni Järvinen, Tapio Salakoski: BioInfer: a corpus for information extraction in the biomedical domain. BMC Bioinformatics 8: (2007)
	2006
9		Tapio Salakoski, Filip Ginter, Sampo Pyysalo, Tapio Pahikkala: Advances in Natural Language Processing, 5th International Conference on NLP, FinTAL 2006, Turku, Finland, August 23-25, 2006, Proceedings Springer 2006
8		Filip Ginter, Sampo Pyysalo, Jorma Boberg, Tapio Salakoski: Regular Approximation of Link Grammar. FinTAL 2006: 564-575
7		Sampo Pyysalo, Tapio Salakoski, Sophie Aubin, Adeline Nazarenko: Lexical adaptation of link grammar to the biomedical sublanguage: a comparative evaluation of three approaches. BMC Bioinformatics 7(S-3): (2006)
6		Sampo Pyysalo, Tapio Salakoski, Sophie Aubin, Adeline Nazarenko: Lexical Adaptation of Link Grammar to the Biomedical Sublanguage: a Comparative Evaluation of Three Approaches CoRR abs/cs/0606119: (2006)
5		Sampo Pyysalo, Filip Ginter, Tapio Pahikkala, Jorma Boberg, Jouni Järvinen, Tapio Salakoski: Evaluation of two dependency parsers on biomedical corpus targeted at protein-protein interactions. I. J. Medical Informatics 75(6): 430-442 (2006)
	2005
4		Tapio Pahikkala, Sampo Pyysalo, Filip Ginter, Jorma Boberg, Jouni Järvinen, Tapio Salakoski: Kernels Incorporating Word Positional Information in Natural Language Disambiguation Tasks. FLAIRS Conference 2005: 442-448
3		Evgeni Tsivtsivadze, Tapio Pahikkala, Sampo Pyysalo, Jorma Boberg, Aleksandr Mylläri, Tapio Salakoski: Regularized Least-Squares for Parse Ranking. IDA 2005: 464-474
	2004
2		Filip Ginter, Sampo Pyysalo, Jorma Boberg, Jouni Järvinen, Tapio Salakoski: Ontology-Based Feature Transformations: A Data-Driven Approach. EsTAL 2004: 280-291
1		Filip Ginter, Tapio Pahikkala, Sampo Pyysalo, Jorma Boberg, Jouni Järvinen, Tapio Salakoski: Extracting Protein-Protein Interaction Sentences by Applying Rough Set Data Analysis. Rough Sets and Current Trends in Computing 2004: 780-785

Coauthor Index

1	Antti Airola	[11] [12]
2	Sophia Ananiadou	[26]
3	Sophie Aubin	[6] [7]
4	Jari Björne	[10] [11] [12] [19]
5	Jorma Boberg	[1] [2] [3] [4] [5] [8] [10] [13]
6	Nigel Collier	[24]
7	Filip Ginter	[1] [2] [4] [5] [8] [9] [10] [11] [12] [14] [15] [19]
8	Udo Hahn	[24]
9	Tadayoshi Hara	[23]
10	Juho Heimonen	[10] [11]
11	Robert Hoehndorf	[21]
12	Jouni Järvinen	[1] [2] [4] [5] [10] [13]
13	Yoshinobu Kano	[25]
14	Jin-Dong Kim	[16] [17] [18] [25]
15	Veronika Laippala	[14]
16	Makoto Miwa	[20] [23]
17	Aleksandr Mylläri	[3]
18	Adeline Nazarenko	[6] [7]
19	Axel-Cyrille Ngonga Ngomo	[21]
20	Anika Oellrich	[21]
21	Tomoko Ohta	[17] [18] [20] [21] [22] [25] [26]
22	Tapio Pahikkala	[1] [3] [4] [5] [9] [12] [13]
23	Dietrich Rebholz-Schuhmann	[21] [24]
24	Fabio Rinaldi	[24]
25	Tapio Salakoski	[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [19]
26	Rune Sætre	[16] [18]
27	Pontus Stenetorp	[26]
28	Hanna Suominen	[15]
29	Goran Topic	[26]
30	Evgeni Tsivtsivadze	[3]
31	Jun-ichi Tsujii	[16] [17] [18] [19] [20] [22] [23] [25] [26]
32	Yue Wang	[16] [18]

Last update Fri May 25 01:42:58 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page