John Quackenbush

	2009
19		Jessica C. Mar, Yasumasa Kimura, Kate Schroder, Katharine M. Irvine, Yoshihide Hayashizaki, Harukazu Suzuki, David A. Hume, John Quackenbush: Data-driven normalization strategies for high-throughput quantitative RT-PCR. BMC Bioinformatics 10: (2009)
18		Alex Bateman, John Quackenbush: Editorial. Bioinformatics 25(4): 429 (2009)
17		David M. Rocke, Trey Ideker, Olga G. Troyanskaya, John Quackenbush, Joaquín Dopazo: Papers on normalization, variable selection, classification or clustering of microarray data. Bioinformatics 25(6): 701-702 (2009)
	2008
16		Michael Ochs, John Quackenbush, Ramana Davuluri: Session Introduction. Pacific Symposium on Biocomputing 2008: 137-140
	2007
15		John Quackenbush: Stochasticity and Networks in Genomic Data. BIBE 2007: 2
14		Jun S. Song, Kaveh Maghsoudi, Wei Li, Edward Fox, John Quackenbush, X. Shirley Liu: Microarray blob-defect removal improves array analysis. Bioinformatics 23(8): 966-971 (2007)
	2006
13		Tim F. Rayner, Philippe Rocca-Serra, Paul T. Spellman, Helen C. Causton, Anna Farne, Ele Holloway, Rafael A. Irizarry, Junmin Liu, Donald Maier, Michael Miller, Kjell Petersen, John Quackenbush, Gavin Sherlock, Christian J. Stoeckert Jr., Joseph White, Patricia L. Whetzel, Farrell Wymore, Helen E. Parkinson, Ugis Sarkans, Catherine A. Ball, Alvis Brazma: A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB. BMC Bioinformatics 7: 489 (2006)
12		John Quackenbush, Steven Salzberg: It is time to end the patenting of software. Bioinformatics 22(12): 1416-1417 (2006)
11		Agnes P. Chan, Geo Pertea, Foo Cheung, Dan Lee, Li Zheng, Cathy Whitelaw, Ana C. Pontaroli, Phillip SanMiguel, Yinan Yuan, Jeffrey Bennetzen, William Brad Barbazuk, John Quackenbush, Pablo D. Rabinowicz: The TIGR Maize Database. Nucleic Acids Research 34(Database-Issue): 771-776 (2006)
	2005
10		Adam A. Margolin, Joel Greshock, Tara L. Naylor, Yael Mosse, John M. Maris, Graham Bignell, Alexander I. Saeed, John Quackenbush, Barbara L. Weber: CGHAnalyzer: a stand-alone software package for cancer genome analysis using array-based DNA copy number data. Bioinformatics 21(15): 3308-3311 (2005)
9		Amira Djebbari, Svetlana Karamycheva, Eleanor Howe, John Quackenbush: MeSHer: identifying biological concepts in microarray assays based on PubMed references and MeSH terms. Bioinformatics 21(15): 3324-3326 (2005)
8		Yuandan Lee, Jennifer Tsai, S. Sunkara, Svetlana Karamycheva, Geo Pertea, Razvan Sultana, Valentin Antonescu, Agnes P. Chan, Foo Cheung, John Quackenbush: The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes. Nucleic Acids Research 33(Database-Issue): 71-74 (2005)
	2003
7		Richard Tong, John Quackenbush, Mark Snuffin: Knowledge-Based Access to the Bio-Medical Literature, Ontologically-Grounded Experiments for the TREC 2003 Genomics Track. TREC 2003: 547-551
6		Geo Pertea, Xiaoqiu Huang, Feng Liang, Valentin Antonescu, Razvan Sultana, Svetlana Karamycheva, Yuandan Lee, Joseph White, Foo Cheung, Babak Parvizi, Jennifer Tsai, John Quackenbush: TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets. Bioinformatics 19(5): 651-652 (2003)
5		Qiaoping Yuan, Shu Ouyang, Jia Liu, Bernard B. Suh, Foo Cheung, Razvan Sultana, Daniel Lee, John Quackenbush, C. Robin Buell: The TIGR rice genome annotation resource: annotating the rice genome and creating resources for plant biologists. Nucleic Acids Research 31(1): 229-233 (2003)
	2002
4		Alexander Sturn, John Quackenbush, Zlatko Trajanoski: Genesis: cluster analysis of microarray data. Bioinformatics 18(1): 207-208 (2002)
3		Catherine A. Ball, Gavin Sherlock, Helen E. Parkinson, Philippe Rocca-Serra, Catherine Brooksbank, Helen C. Causton, Duccio Cavalieri, Terry Gaasterland, Pascal Hingamp, Frank Holstege, Martin Ringwald, Paul T. Spellman, Christian J. Stoeckert Jr., Jason E. Stewart, Ronald Taylor, Alvis Brazma, John Quackenbush: An open letter to the scientific journals. Bioinformatics 18(11): 1409 (2002)
	2001
2		John Quackenbush, Jennifer Cho, Daniel Lee, Feng Liang, Ingeborg Holt, Svetlana Karamycheva, Babak Parvizi, Geo Pertea, Razvan Sultana, Joseph White: The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species. Nucleic Acids Research 29(1): 159-164 (2001)
	2000
1		John Quackenbush, Feng Liang, Ingeborg Holt, Geo Pertea, Jonathan Upton: The TIGR Gene Indices: reconstruction and representation of expressed gene sequences. Nucleic Acids Research 28(1): 141-145 (2000)

Coauthor Index

1	Valentin Antonescu	[6] [8]
2	Catherine A. Ball	[3] [13]
3	William Brad Barbazuk	[11]
4	Alex Bateman	[18]
5	Jeffrey Bennetzen	[11]
6	Graham Bignell	[10]
7	Alvis Brazma	[3] [13]
8	Catherine Brooksbank	[3]
9	C. Robin Buell	[5]
10	Helen C. Causton	[3] [13]
11	Duccio Cavalieri	[3]
12	Agnes P. Chan	[8] [11]
13	Foo Cheung	[5] [6] [8] [11]
14	Jennifer Cho	[2]
15	Ramana Davuluri	[16]
16	Amira Djebbari	[9]
17	Joaquín Dopazo	[17]
18	Anna Farne	[13]
19	Edward Fox	[14]
20	Terry Gaasterland	[3]
21	Joel Greshock	[10]
22	Yoshihide Hayashizaki	[19]
23	Pascal Hingamp	[3]
24	Ele Holloway	[13]
25	Frank Holstege	[3]
26	Ingeborg Holt	[1] [2]
27	Eleanor Howe	[9]
28	Xiaoqiu Huang	[6]
29	David A. Hume	[19]
30	Trey Ideker	[17]
31	Rafael A. Irizarry	[13]
32	Katharine M. Irvine	[19]
33	Svetlana Karamycheva	[2] [6] [8] [9]
34	Yasumasa Kimura	[19]
35	Dan Lee	[11]
36	Daniel Lee	[2] [5]
37	Yuandan Lee	[6] [8]
38	Wei Li	[14]
39	Feng Liang	[1] [2] [6]
40	Jia Liu	[5]
41	Junmin Liu	[13]
42	X. Shirley Liu	[14]
43	Kaveh Maghsoudi	[14]
44	Donald Maier	[13]
45	Jessica C. Mar	[19]
46	Adam A. Margolin	[10]
47	John M. Maris	[10]
48	Michael Miller	[13]
49	Yael Mosse	[10]
50	Tara L. Naylor	[10]
51	Michael Ochs	[16]
52	Shu Ouyang	[5]
53	Helen E. Parkinson	[3] [13]
54	Babak Parvizi	[2] [6]
55	Geo Pertea	[1] [2] [6] [8] [11]
56	Kjell Petersen	[13]
57	Ana C. Pontaroli	[11]
58	Pablo D. Rabinowicz	[11]
59	Tim F. Rayner	[13]
60	Martin Ringwald	[3]
61	Philippe Rocca-Serra	[3] [13]
62	David M. Rocke	[17]
63	Alexander I. Saeed	[10]
64	Steven Salzberg (Steven L. Salzberg)	[12]
65	Phillip SanMiguel	[11]
66	Ugis Sarkans	[13]
67	Kate Schroder	[19]
68	Gavin Sherlock	[3] [13]
69	Mark Snuffin	[7]
70	Jun S. Song	[14]
71	Paul T. Spellman	[3] [13]
72	Jason E. Stewart	[3]
73	Christian J. Stoeckert Jr.	[3] [13]
74	Alexander Sturn	[4]
75	Bernard B. Suh	[5]
76	Razvan Sultana	[2] [5] [6] [8]
77	S. Sunkara	[8]
78	Harukazu Suzuki	[19]
79	Ronald Taylor	[3]
80	Richard Tong	[7]
81	Zlatko Trajanoski	[4]
82	Olga G. Troyanskaya	[17]
83	Jennifer Tsai	[6] [8]
84	Jonathan Upton	[1]
85	Barbara L. Weber	[10]
86	Patricia L. Whetzel	[13]
87	Joseph White	[2] [6] [13]
88	Cathy Whitelaw	[11]
89	Farrell Wymore	[13]
90	Qiaoping Yuan	[5]
91	Yinan Yuan	[11]
92	Li Zheng	[11]

Colors in the list of coauthors