Benjamin J. Raphael

	2012
25		Fabio Vandin, Eli Upfal, Benjamin J. Raphael: Workshop: Algorithms for discovery of mutated pathways in cancer. ICCABS 2012: 1
24		Fabio Vandin, Eli Upfal, Benjamin J. Raphael: Algorithms and Genome Sequencing: Identifying Driver Pathways in Cancer. IEEE Computer 45(3): 39-46 (2012)
	2011
23		Benjamin J. Raphael, Suzanne S. Sindi, Anna M. Ritz, Ali Bashir: Workshop: Characterization of structural variants with next generation DNA sequencing. ICCABS 2011: 275
22		Fabio Vandin, Eli Upfal, Benjamin J. Raphael: De Novo Discovery of Mutated Driver Pathways in Cancer. RECOMB 2011: 499-500
21		Fabio Vandin, Eli Upfal, Benjamin J. Raphael: Finding Driver Pathways in Cancer: Models and Algorithms. WABI 2011: 314-325
20		Anna M. Ritz, Pamela L. Paris, Michael Ittmann, Colin Collins, Benjamin J. Raphael: Detection of recurrent rearrangement breakpoints from copy number data. BMC Bioinformatics 12: 114 (2011)
	2010
19		Fabio Vandin, Eli Upfal, Benjamin J. Raphael: Algorithms for Detecting Significantly Mutated Pathways in Cancer. RECOMB 2010: 506-521
18		Anna M. Ritz, Ali Bashir, Benjamin J. Raphael: Structural variation analysis with strobe reads. Bioinformatics 26(10): 1291-1298 (2010)
17		Crystal L. Kahn, Borislav H. Hristov, Benjamin J. Raphael: Parsimony and likelihood reconstruction of human segmental duplications. Bioinformatics 26(18): (2010)
16		Trevor M. O'Brien, Anna M. Ritz, Benjamin J. Raphael, David H. Laidlaw: Gremlin: An Interactive Visualization Model for Analyzing Genomic Rearrangements. IEEE Trans. Vis. Comput. Graph. 16(6): 918-926 (2010)
	2009
15		Crystal L. Kahn, Benjamin J. Raphael: A Parsimony Approach to Analysis of Human Segmental Duplications. Pacific Symposium on Biocomputing 2009: 126-137
14		Ali Bashir, Qing Lu, Dennis Carson, Benjamin J. Raphael, Yu-Tsueng Liu, Vineet Bafna: Optimizing PCR Assays for DNA Based Cancer Diagnostics. RECOMB 2009: 220-235
13		Suzanne S. Sindi, Benjamin J. Raphael: Identification and Frequency Estimation of Inversion Polymorphisms from Haplotype Data. RECOMB 2009: 418-433
12		Crystal L. Kahn, Shay Mozes, Benjamin J. Raphael: Efficient Algorithms for Analyzing Segmental Duplications, Deletions, and Inversions in Genomes. WABI 2009: 169-180
11		Anna M. Ritz, Gregory Shakhnarovich, Arthur R. Salomon, Benjamin J. Raphael: Discovery of phosphorylation motif mixtures in phosphoproteomics data. Bioinformatics 25(1): 14-21 (2009)
10		Suzanne S. Sindi, Elena Helman, Ali Bashir, Benjamin J. Raphael: A geometric approach for classification and comparison of structural variants. Bioinformatics 25(12): (2009)
	2008
9		Crystal L. Kahn, Benjamin J. Raphael: Analysis of segmental duplications via duplication distance. ECCB 2008: 133-138
8		Ali Bashir, Stanislav Volik, Colin Collins, Vineet Bafna, Benjamin J. Raphael: Evaluation of Paired-End Sequencing Strategies for Detection of Genome Rearrangements in Cancer. PLoS Computational Biology 4(4): (2008)
	2007
7		Erik Corona, Benjamin J. Raphael, Eleazar Eskin: Identification of Deletion Polymorphisms from Haplotypes. RECOMB 2007: 354-365
6		Ali Bashir, Yu-Tsueng Liu, Benjamin J. Raphael, Dennis Carson, Vineet Bafna: Optimization of primer design for the detection of variable genomic lesions in cancer. Bioinformatics 23(21): 2807-2815 (2007)
	2006
5		Eleazar Eskin, Trey Ideker, Benjamin J. Raphael, Christopher T. Workman: Systems Biology and Regulatory Genomics, Joint Annual RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics, San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers Springer 2006
4		Neil C. Jones, Degui Zhi, Benjamin J. Raphael: AliWABA: alignment on the web through an A-Bruijn approach. Nucleic Acids Research 34(Web-Server-Issue): 613-616 (2006)
	2004
3		Benjamin J. Raphael, Pavel A. Pevzner: Reconstructing tumor amplisomes. ISMB/ECCB (Supplement of Bioinformatics) 2004: 265-273
2		Benjamin J. Raphael, Lung-Tien Liu, George Varghese: A Uniform Projection Method for Motif Discovery in DNA Sequences. IEEE/ACM Trans. Comput. Biology Bioinform. 1(2): 91-94 (2004)
	2003
1		Benjamin J. Raphael, Stanislav Volik, Colin Collins, Pavel A. Pevzner: Reconstructing tumor genome architectures. ECCB 2003: 162-171

Coauthor Index

1	Vineet Bafna	[6] [8] [14]
2	Ali Bashir	[6] [8] [10] [14] [18] [23]
3	Dennis Carson	[6] [14]
4	Colin Collins	[1] [8] [20]
5	Erik Corona	[7]
6	Eleazar Eskin	[5] [7]
7	Elena Helman	[10]
8	Borislav H. Hristov	[17]
9	Trey Ideker	[5]
10	Michael Ittmann	[20]
11	Neil C. Jones	[4]
12	Crystal L. Kahn	[9] [12] [15] [17]
13	David H. Laidlaw	[16]
14	Lung-Tien Liu	[2]
15	Yu-Tsueng Liu	[6] [14]
16	Qing Lu	[14]
17	Shay Mozes	[12]
18	Trevor M. O'Brien	[16]
19	Pamela L. Paris	[20]
20	Pavel A. Pevzner	[1] [3]
21	Anna M. Ritz	[11] [16] [18] [20] [23]
22	Arthur R. Salomon	[11]
23	Gregory Shakhnarovich	[11]
24	Suzanne S. Sindi	[10] [13] [23]
25	Eli Upfal	[19] [21] [22] [24] [25]
26	Fabio Vandin	[19] [21] [22] [24] [25]
27	George Varghese	[2]
28	Stanislav Volik	[1] [8]
29	Christopher T. Workman	[5]
30	Degui Zhi	[4]

Colors in the list of coauthors

Last update Fri May 25 01:42:58 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page