 | 2009 |
|---|
| 11 |       | Troy A. Ruths,
Derek A. Ruths,
Luay Nakhleh:
GS2: an efficiently computable measure of GO-based similarity of gene sets.
Bioinformatics 25(9): 1178-1184 (2009) |
| 2008 |
|---|
| 10 | | Cuong Than,
Derek A. Ruths,
Luay Nakhleh:
PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships.
BMC Bioinformatics 9: (2008) |
| 2007 |
|---|
| 9 | | Cuong Than,
Derek A. Ruths,
Hideki Innan,
Luay Nakhleh:
Confounding Factors in HGT Detection: Statistical Error, Coalescent Effects, and Multiple Solutions.
Journal of Computational Biology 14(4): 517-535 (2007) |
| 2006 |
|---|
| 8 | | Derek A. Ruths,
Luay Nakhleh:
Techniques for Assessing Phylogenetic Branch Support: A Performance Study.
APBC 2006: 187-196 |
| 7 | | Derek A. Ruths,
Luay Nakhleh:
RECOMP: A Parsimony-Based Method for Detecting Recombination.
APBC 2006: 59-68 |
| 6 | | Cuong Than,
Derek A. Ruths,
Hideki Innan,
Luay Nakhleh:
Identifiability Issues in Phylogeny-Based Detection of Horizontal Gene Transfer.
Comparative Genomics 2006: 215-229 |
| 5 | | Derek A. Ruths,
Jen-Te Tseng,
Luay Nakhleh,
Prahlad T. Ram:
De Novo Signaling Pathway Predictions Based on Protein-Protein Interaction, Targeted Therapy and Protein Microarray Analysis.
Systems Biology and Computational Proteomics 2006: 108-118 |
| 4 | | Derek A. Ruths,
Luay Nakhleh,
M. Sriram Iyengar,
Shrikanth A. G. Reddy,
Prahlad T. Ram:
Hypothesis Generation in Signaling Networks.
Journal of Computational Biology 13(9): 1546-1557 (2006) |
| 2005 |
|---|
| 3 | | Luay Nakhleh,
Derek A. Ruths,
Li-San Wang:
RIATA-HGT: A Fast and Accurate Heuristic for Reconstructing Horizontal Gene Transfer.
COCOON 2005: 84-93 |
| 2 | | Derek A. Ruths,
Luay Nakhleh:
Recombination and phylogeny: effects and detection.
IJBRA 1(2): 202-212 (2005) |
| 2000 |
|---|
| 1 |  | Derek A. Ruths,
Edward S. Chen,
Leland Ellis:
Arbor 3D: an interactive environment for examining phylogenetic and taxonomic trees in multiple dimensions.
Bioinformatics 16(11): 1003-1009 (2000) |
