Marie-France Sagot

	2009
63		Yves-Pol Deniélou, Frédéric Boyer, Alain Viari, Marie-France Sagot: Multiple Alignment of Biological Networks: A Flexible Approach. CPM 2009: 263-273
62		Pierre Peterlongo, Gustavo Akio Tominaga Sacomoto, Alair Pereira do Lago, Nadia Pisanti, Marie-France Sagot: Lossless filter for multiple repeats with bounded edit distance. Algorithms for Molecular Biology 4: (2009)
61		Marie-France Sagot, B. J. Morrison McKay, Gene Myers: ISMB/ECCB 2009 Stockholm. Bioinformatics 25(12): 1570-1573 (2009)
60		Marie-France Sagot: New EIC Editorial. IEEE/ACM Trans. Comput. Biology Bioinform. 6(1): 3 (2009)
59		Marie-France Sagot: EIC Editorial. IEEE/ACM Trans. Comput. Biology Bioinform. 6(2): 177 (2009)
58		Marie-France Sagot: EIC Editorial: Introducing New Associate Editors. IEEE/ACM Trans. Comput. Biology Bioinform. 6(3): 369 (2009)
	2008
57		Paulo G. S. da Fonseca, Katia S. Guimarães, Marie-France Sagot: Efficient representation and P-value computation for high-order Markov motifs. ECCB 2008: 160-166
56		Ludovic Cottret, Paulo Vieira Milreu, Vicente Acuña, Alberto Marchetti-Spaccamela, Fábio Viduani Martinez, Marie-France Sagot, Leen Stougie: Enumerating Precursor Sets of Target Metabolites in a Metabolic Network. WABI 2008: 233-244
55		Claire Lemaitre, Eric Tannier, Christian Gautier, Marie-France Sagot: Precise detection of rearrangement breakpoints in mammalian chromosomes. BMC Bioinformatics 9: (2008)
54		Julien Allali, Marie-France Sagot: A new distance for high level RNA secondary structure comparison CoRR abs/0810.4002: (2008)
53		Said Sadique Adi, Marília D. V. Braga, Cristina G. Fernandes, Carlos Eduardo Ferreira, Fábio Viduani Martinez, Marie-France Sagot, Marco A. Stefanes, Christian Tjandraatmadja, Yoshiko Wakabayashi: Repetition-free longest common subsequence. Electronic Notes in Discrete Mathematics 30: 243-248 (2008)
52		Marília D. V. Braga, Marie-France Sagot, Celine Scornavacca, Eric Tannier: Exploring the Solution Space of Sorting by Reversals, with Experiments and an Application to Evolution. IEEE/ACM Trans. Comput. Biology Bioinform. 5(3): 348-356 (2008)
51		Vincent Lacroix, Ludovic Cottret, Patricia Thébault, Marie-France Sagot: An Introduction to Metabolic Networks and Their Structural Analysis. IEEE/ACM Trans. Comput. Biology Bioinform. 5(4): 594-617 (2008)
50		Pierre Peterlongo, Julien Allali, Marie-France Sagot: Indexing Gapped-Factors Using a Tree. Int. J. Found. Comput. Sci. 19(1): 71-87 (2008)
49		Katia S. Guimarães, Marie-France Sagot: Editorial. J. Discrete Algorithms 6(2): 163 (2008)
48		Pierre Peterlongo, Nadia Pisanti, Frédéric Boyer, Alair Pereira do Lago, Marie-France Sagot: Lossless filter for multiple repetitions with Hamming distance. J. Discrete Algorithms 6(3): 497-509 (2008)
47		Julien Allali, Marie-France Sagot: A multiple layer model to compare RNA secondary structures. Softw., Pract. Exper. 38(8): 775-792 (2008)
46		Claire Lemaitre, Marie-France Sagot: A small trip in the untranquil world of genomes: A survey on the detection and analysis of genome rearrangement breakpoints. Theor. Comput. Sci. 395(2-3): 171-192 (2008)
	2007
45		Marie-France Sagot, Maria Emilia Telles Walter: Advances in Bioinformatics and Computational Biology, Second Brazilian Symposium on Bioinformatics, BSB 2007, Angra dos Reis, Brazil, August 29-31, 2007, Proceedings Springer 2007
44		Alexandra M. Carvalho, Arlindo L. Oliveira, Marie-France Sagot: Efficient Learning of Bayesian Network Classifiers. Australian Conference on Artificial Intelligence 2007: 16-25
43		Marília D. V. Braga, Marie-France Sagot, Celine Scornavacca, Eric Tannier: The Solution Space of Sorting by Reversals. ISBRA 2007: 293-304
42		Eric Tannier, Anne Bergeron, Marie-France Sagot: Advances on sorting by reversals. Discrete Applied Mathematics 155(6-7): 881-888 (2007)
41		Yoan Diekmann, Marie-France Sagot, Eric Tannier: Evolution under Reversals: Parsimony and Conservation of Common Intervals. IEEE/ACM Trans. Comput. Biology Bioinform. 4(2): 301-309 (2007)
40		Emilios Cambouropoulos, Maxime Crochemore, Costas S. Iliopoulos, Manal Mohamed, Marie-France Sagot: All maximal-pairs in step-leap representation of melodic sequence. Inf. Sci. 177(9): 1954-1962 (2007)
39		Estela Maris Rodrigues, Marie-France Sagot, Yoshiko Wakabayashi: The maximum agreement forest problem: Approximation algorithms and computational experiments. Theor. Comput. Sci. 374(1-3): 91-110 (2007)
	2006
38		Nadia Pisanti, Alexandra M. Carvalho, Laurent Marsan, Marie-France Sagot: RISOTTO: Fast Extraction of Motifs with Mismatches. LATIN 2006: 757-768
37		Pierre Peterlongo, Julien Allali, Marie-France Sagot: The gapped-factor tree. Stringology 2006: 182-196
36		Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot: An Efficient Algorithm for the Identification of Structured Motifs in DNA Promoter Sequences. IEEE/ACM Trans. Comput. Biology Bioinform. 3(2): 126-140 (2006)
35		Vincent Lacroix, Cristina G. Fernandes, Marie-France Sagot: Motif Search in Graphs: Application to Metabolic Networks. IEEE/ACM Trans. Comput. Biology Bioinform. 3(4): 360-368 (2006)
34		Maxime Crochemore, Costas S. Iliopoulos, Manal Mohamed, Marie-France Sagot: Longest repeats with a block of k don't cares. Theor. Comput. Sci. 362(1-3): 248-254 (2006)
	2005
33		Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot: A highly scalable algorithm for the extraction of CIS-regulatory regions. APBC 2005: 273-282
32		Marie-France Sagot, Eric Tannier: Perfect Sorting by Reversals. COCOON 2005: 42-51
31		Emilios Cambouropoulos, Maxime Crochemore, Costas S. Iliopoulos, Manal Mohamed, Marie-France Sagot: A Pattern Extraction Algorithm for Abstract Melodic Representations that Allow Partial Overlapping of Intervallic Categories. ISMIR 2005: 167-174
30		Pierre Peterlongo, Nadia Pisanti, Frédéric Boyer, Marie-France Sagot: Lossless Filter for Finding Long Multiple Approximate Repetitions Using a New Data Structure, the Bi-factor Array. SPIRE 2005: 179-190
29		Julien Allali, Marie-France Sagot: A Multiple Graph Layers Model with Application to RNA Secondary Structures Comparison. SPIRE 2005: 348-359
28		Vincent Lacroix, Cristina G. Fernandes, Marie-France Sagot: Reaction Motifs in Metabolic Networks. WABI 2005: 178-191
27		Julien Allali, Marie-France Sagot: A New Distance for High Level RNA Secondary Structure Comparison. IEEE/ACM Trans. Comput. Biology Bioinform. 2(1): 3-14 (2005)
26		Nadia Pisanti, Maxime Crochemore, Roberto Grossi, Marie-France Sagot: Bases of Motifs for Generating Repeated Patterns with Wild Cards. IEEE/ACM Trans. Comput. Biology Bioinform. 2(1): 40-50 (2005)
25		Costas S. Iliopoulos, James A. M. McHugh, Pierre Peterlongo, Nadia Pisanti, Wojciech Rytter, Marie-France Sagot: A first approach to finding common motifs with gaps. Int. J. Found. Comput. Sci. 16(6): 1145-1154 (2005)
	2004
24		Eric Tannier, Marie-France Sagot: Sorting by Reversals in Subquadratic Time. CPM 2004: 1-13
23		Maxime Crochemore, Costas S. Iliopoulos, Manal Mohamed, Marie-France Sagot: Longest Repeats with a Block of Don't Cares. LATIN 2004: 271-278
22		Alexandra M. Carvalho, Arlindo L. Oliveira, Ana T. Freitas, Marie-France Sagot: A parallel algorithm for the extraction of structured motifs. SAC 2004: 147-153
21		Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot: Efficient Extraction of Structured Motifs Using Box-Links. SPIRE 2004: 267-268
20		Maxime Crochemore, Raffaele Giancarlo, Marie-France Sagot: Longest Motifs with a Functionally Equivalent Central Block. SPIRE 2004: 298-209
19		Costas S. Iliopoulos, James A. M. McHugh, Pierre Peterlongo, Nadia Pisanti, Wojciech Rytter, Marie-France Sagot: A First Approach to Finding Common Motifs With Gaps. Stringology 2004: 88-97
18		Julien Allali, Marie-France Sagot: Novel Tree Edit Operations for RNA Secondary Structure Comparison. WABI 2004: 412-425
	2003
17		Nadia Pisanti, Maxime Crochemore, Roberto Grossi, Marie-France Sagot: A Basis of Tiling Motifs for Generating Repeated Patterns and Its Complexity for Higher Quorum. MFCS 2003: 622-631
16		Philippe Blayo, Pierre Rouzé, Marie-France Sagot: Orphan gene finding - an exon assembly approach. Theor. Comput. Sci. 290(3): 1407-1431 (2003)
	2002
15		Nadia Pisanti, Marie-France Sagot: Further Thoughts on the Syntenic Distance between Genomes. Algorithmica 34(2): 157-180 (2002)
14		Stéphane Robin, Jean-Jacques Daudin, Hugues Richard, Marie-France Sagot, Sophie Schbath: Occurrence Probability of Structured Motifs in Random Sequences. Journal of Computational Biology 9(6): 761-774 (2002)
	2001
13		Olivier Gascuel, Marie-France Sagot: Computational Biology, First International Conference on Biology, Informatics, and Mathematics, JOBIM 2000, Montpellier, France, May 3-5, 2000, Selected Papers Springer 2001
12		Estela Maris Rodrigues, Marie-France Sagot, Yoshiko Wakabayashi: Some Approximation Results for the Maximum Agreement Forest Problem. RANDOM-APPROX 2001: 159-169
	2000
11		Laurent Marsan, Marie-France Sagot: Extracting structured motifs using a suffix tree - algorithms and application to promoter consensus identification. RECOMB 2000: 210-219
10		Laurent Marsan, Marie-France Sagot: Algorithms for Extracting Structured Motifs Using a Suffix Tree with an Application to Promoter and Regulatory Site Consensus Identification. Journal of Computational Biology 7(3-4): 345-362 (2000)
	1998
9		Marie-France Sagot: Spelling Approximate Repeated or Common Motifs Using a Suffix Tree. LATIN 1998: 374-390
8		Marie-France Sagot, Eugene W. Myers: Identifying satellites in nucleic acid sequences. RECOMB 1998: 234-242
7		Marie-France Sagot, Eugene W. Myers: Identifying Satellites and Periodic Repetitions in Biological Sequences. Journal of Computational Biology 5(3): 539-554 (1998)
	1997
6		Marie-France Sagot, Alain Viari: Flexible Identification of Structural Objects in Nucleic Acid Sequences: Palindromes, Mirror Repeats, Pseudoknots and Triple Helices. CPM 1997: 224-246
5		Marie-France Sagot, Alain Viari, Henry Soldano: Multiple Sequence Comparison - A Peptide Matching Approach. Theor. Comput. Sci. 180(1-2): 115-137 (1997)
	1996
4		Marie-France Sagot, Alain Viari: A Double Combinatorial Approach to Discovering Patterns in Biological Sequences. CPM 1996: 186-208
	1995
3		Marie-France Sagot, Alain Viari, Henry Soldano: Multiple Sequence Comparison: A Peptide Matching Approach. CPM 1995: 366-385
2		Marie-France Sagot, Alain Viari, Henry Soldano: A Distance-Based Block Searching Algorithm. ISMB 1995: 322-331
1		Marie-France Sagot, Alain Viari, Joël Pothier, Henry Soldano: Finding flexible patterns in a text: an application to three-dimensional molecular matching. Computer Applications in the Biosciences 11(1): 59-70 (1995)

Coauthor Index

1	Vicente Acuña	[56]
2	Said Sadique Adi	[53]
3	Julien Allali	[18] [27] [29] [37] [47] [50] [54]
4	Anne Bergeron	[42]
5	Philippe Blayo	[16]
6	Frédéric Boyer	[30] [48] [63]
7	Marília D. V. Braga	[43] [52] [53]
8	Emilios Cambouropoulos	[31] [40]
9	Alexandra M. Carvalho	[21] [22] [33] [36] [38] [44]
10	Ludovic Cottret	[51] [56]
11	Maxime Crochemore	[17] [20] [23] [26] [31] [34] [40]
12	Jean-Jacques Daudin	[14]
13	Yves-Pol Deniélou	[63]
14	Yoan Diekmann	[41]
15	Cristina G. Fernandes	[28] [35] [53]
16	Carlos Eduardo Ferreira	[53]
17	Paulo G. S. da Fonseca	[57]
18	Ana T. Freitas	[21] [22] [33] [36]
19	Olivier Gascuel	[13]
20	Christian Gautier	[55]
21	Raffaele Giancarlo	[20]
22	Roberto Grossi	[17] [26]
23	Katia S. Guimarães	[49] [57]
24	Costas S. Iliopoulos	[19] [23] [25] [31] [34] [40]
25	Vincent Lacroix	[28] [35] [51]
26	Alair Pereira do Lago	[48] [62]
27	Claire Lemaitre	[46] [55]
28	Alberto Marchetti-Spaccamela	[56]
29	Laurent Marsan	[10] [11] [38]
30	Fábio Viduani Martinez	[53] [56]
31	James A. M. McHugh	[19] [25]
32	B. J. Morrison McKay	[61]
33	Paulo Vieira Milreu	[56]
34	Manal Mohamed	[23] [31] [34] [40]
35	Eugene W. Myers (Gene Myers)	[7] [8] [61]
36	Arlindo L. Oliveira	[21] [22] [33] [36] [44]
37	Pierre Peterlongo	[19] [25] [30] [37] [48] [50] [62]
38	Nadia Pisanti	[15] [17] [19] [25] [26] [30] [38] [48] [62]
39	Joël Pothier	[1]
40	Hugues Richard	[14]
41	Stéphane Robin	[14]
42	Estela Maris Rodrigues	[12] [39]
43	Pierre Rouzé	[16]
44	Wojciech Rytter	[19] [25]
45	Gustavo Akio Tominaga Sacomoto	[62]
46	Sophie Schbath	[14]
47	Celine Scornavacca	[43] [52]
48	Henry Soldano	[1] [2] [3] [5]
49	Marco A. Stefanes	[53]
50	Leen Stougie	[56]
51	Eric Tannier	[24] [32] [41] [42] [43] [52] [55]
52	Patricia Thébault	[51]
53	Christian Tjandraatmadja	[53]
54	Alain Viari	[1] [2] [3] [4] [5] [6] [63]
55	Yoshiko Wakabayashi	[12] [39] [53]
56	Maria Emilia Telles Walter (Maria Emilia M. T. Walter)	[45]

Colors in the list of coauthors