Yasubumi Sakakibara

	2009
53		Kengo Sato, Michiaki Hamada, Toutai Mituyama, Kiyoshi Asai, Yasubumi Sakakibara: A Non-parametric Bayesian Approach for Predicting RNA Secondary Structures. WABI 2009: 286-297
52		Tsuyoshi Hachiya, Yasunori Osana, Kris Popendorf, Yasubumi Sakakibara: Accurate identification of orthologous segments among multiple genomes. Bioinformatics 25(11): 1474 (2009)
51		Tsuyoshi Hachiya, Yasunori Osana, Kris Popendorf, Yasubumi Sakakibara: Accurate identification of orthologous segments among multiple genomes. Bioinformatics 25(7): 853-860 (2009)
	2008
50		Yusuke Nakagawa, Katsuyuki Yugi, Kenji Tsuge, Mitsuhiro Itaya, Hiroshi Yanagawa, Yasubumi Sakakibara: Operon Structure Optimization by Random Self-assembly. DNA 2008: 33-40
49		Kengo Sato, Toutai Mituyama, Kiyoshi Asai, Yasubumi Sakakibara: Directed acyclic graph kernels for structural RNA analysis. BMC Bioinformatics 9: (2008)
48		Kiyoshi Asai, Hisanori Kiryu, Michiaki Hamada, Yasuo Tabei, Kengo Sato, Hiroshi Matsui, Yasubumi Sakakibara, Goro Terai, Toutai Mituyama: Software.ncrna.org: web servers for analyses of RNA sequences. Nucleic Acids Research 36(Web-Server-Issue): 75-78 (2008)
	2007
47		Yasubumi Sakakibara, Kiyoshi Asai, Kengo Sato: Stem Kernels for RNA Sequence Analyses. BIRD 2007: 278-291
46		Nobuyoshi Nagamine, Yasubumi Sakakibara: Statistical prediction of protein-chemical interactions based on chemical structure and mass spectrometry data. Bioinformatics 23(15): 2004-2012 (2007)
45		Yasubumi Sakakibara, Kris Popendorf, Nana Ogawa, Kiyoshi Asai, Kengo Sato: Stem Kernels for RNA Sequence Analyses. J. Bioinformatics and Computational Biology 5(5): 1103-1122 (2007)
44		Georgios Paliouras, Yasubumi Sakakibara: Guest editorial to the special issue on grammatical inference. Machine Learning 66(1): 3-5 (2007)
	2006
43		Yasubumi Sakakibara, Satoshi Kobayashi, Kengo Sato, Tetsuro Nishino, Etsuji Tomita: Grammatical Inference: Algorithms and Applications, 8th International Colloquium, ICGI 2006, Tokyo, Japan, September 20-22, 2006, Proceedings Springer 2006
42		Yuji Kawada, Yasubumi Sakakibara: Discriminative Detection of Cis-Acting Regulatory Variation From Location Data. APBC 2006: 89-98
	2005
41		Yuji Kawada, Yasubumi Sakakibara: Discriminative Discovery of Transcription Factor Binding Sites from Location Data. CSB 2005: 86-89
40		Junna Kuramochi, Yasubumi Sakakibara: Intensive In Vitro Experiments of Implementing and Executing Finite Automata in Test Tube. DNA 2005: 193-202
39		Hirotaka Nakagawa, Kensaku Sakamoto, Yasubumi Sakakibara: Development of an In Vivo Computer Based on Escherichia coli. DNA 2005: 203-212
38		Kengo Sato, Yasubumi Sakakibara: RNA secondary structural alignment with conditional random fields. ECCB/JBI 2005: 242
37		Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara: Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures. Bioinformatics 21(11): 2611-2617 (2005)
36		Yasubumi Sakakibara: Development of a Bacteria Computer: From in silico Finite Automata to in virto AND in vivo. Bulletin of the EATCS 87: 165-178 (2005)
35		Yasubumi Sakakibara: Grammatical Inference in Bioinformatics. IEEE Trans. Pattern Anal. Mach. Intell. 27(7): 1051-1062 (2005)
34		Yasubumi Sakakibara: Learning context-free grammars using tabular representations. Pattern Recognition 38(9): 1372-1383 (2005)
	2004
33		Georgios Paliouras, Yasubumi Sakakibara: Grammatical Inference: Algorithms and Applications, 7th International Colloquium, ICGI 2004, Athens, Greece, October 11-13, 2004, Proceedings Springer 2004
32		Satoshi Kobayashi, Takashi Yokomori, Yasubumi Sakakibara: An Algorithm for Testing Structure Freeness of Biomolecular Sequences. Aspects of Molecular Computing 2004: 266-277
31		Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara: Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures. CSB 2004: 290-299
30		Yasubumi Sakakibara, Hiroshi Imai: A DNA-Based Computational Model Using a Specific Type of Restriction Enzymes. Journal of Automata, Languages and Combinatorics 9(1): 111-119 (2004)
	2003
29		Yasubumi Sakakibara, Takahiro Hohsaka: In Vitro Translation-Based Computations. DNA 2003: 197-202
28		Yasubumi Sakakibara: Pair hidden Markov models on tree structures. ISMB (Supplement of Bioinformatics) 2003: 232-240
27		Yasubumi Sakakibara: DNA-based algorithms for learning Boolean formulae. Natural Computing 2(2): 153-171 (2003)
	2002
26		Yasubumi Sakakibara, Hiroshi Imai: A DNA-based Computational Model Using a Specific Type of Restriction Enzyme. DNA 2002: 315-325
25		Takashi Yokomori, Yasubumi Sakakibara, Satoshi Kobayashi: A Magic Pot : Self-assembly Computation Revisited. Formal and Natural Computing 2002: 418-430
	2001
24		Yasubumi Sakakibara: Population Computation and Majority Inference in Test Tube. DNA 2001: 82-91
23		Yasubumi Sakakibara, Satoshi Kobayashi: Sticker systems with complex structures. Soft Comput. 5(2): 114-120 (2001)
22		Satoshi Kobayashi, Yasubumi Sakakibara: Multiple splicing systems and the universal computability. Theor. Comput. Sci. 264(1): 3-23 (2001)
	2000
21		Yasubumi Sakakibara: Solving Computational Learning Problems of Boolean Formulae on DNA Computers. DNA Computing 2000: 220-230
20		Yasubumi Sakakibara, Hidenori Muramatsu: Learning Context-Free Grammars from Partially Structured Examples. ICGI 2000: 229-240
	1999
19		Yasubumi Sakakibara, Mitsuhiro Kondo: GA-based Learning of Context-Free Grammars using Tabular Representations. ICML 1999: 354-360
18		Yasubumi Sakakibara, Claudio Ferretti: Splicing on Tree-Like Structures. Theor. Comput. Sci. 210(2): 227-243 (1999)
	1997
17		Christoph Globig, Klaus P. Jantke, Steffen Lange, Yasubumi Sakakibara: On Case Based Learnability of Language. New Generation Comput. 15(1): 39-83 (1997)
16		Yasubumi Sakakibara: Recent Advances of Grammatical Inference. Theor. Comput. Sci. 185(1): 15-45 (1997)
	1996
15		Mostefa Golea, Masahiro Matsuoka, Yasubumi Sakakibara: Stochastic simple recurrent neural networks. ICGI 1996: 262-273
	1995
14		Yasubumi Sakakibara: Grammatical Inference: An Old and New Paradigm. ALT 1995: 1-24
	1994
13		Yasubumi Sakakibara, Klaus P. Jantke, Steffen Lange: Learning Languages by Collecting Cases and Tuning Parameters. AII/ALT 1994: 532-546
12		Yasubumi Sakakibara, Michael Brown, Richard Hughey, I. Saira Mian, Kimmen Sjölander, Rebecca C. Underwood, David Haussler: Recent Methods for RNA Modeling Using Stochastic Context-Free Grammars. CPM 1994: 289-306
11		Yasubumi Sakakibara, Michael Brown, Rebecca C. Underwood, I. Saira Mian, David Haussler: Stochastic Context-Free Grammars for Modeling RN. HICSS (5) 1994: 284-294
	1993
10		Yasubumi Sakakibara: Noise-Tolerant Occam Algorithms and Their Applications to Learning Decision Trees. Machine Learning 11: 37-62 (1993)
	1992
9		Yasubumi Sakakibara, Rani Siromoney: A Noise Model on Learning Sets of Strings. COLT 1992: 295-302
8		Yasubumi Sakakibara: Efficient Learning of Context-Free Grammars from Positive Structural Examples Inf. Comput. 97(1): 23-60 (1992)
	1991
7		Yasubumi Sakakibara: On Learning from Queries and Counterexamples in the Presence of Noise. Inf. Process. Lett. 37(5): 279-284 (1991)
	1990
6		Yasubumi Sakakibara: Occam Algorithms for Learning From Noisy Examples. ALT 1990: 193-208
5		Yuji Takada, Kunihiko Hiraishi, Yasubumi Sakakibara: Exact Learning of Semilinear Sets. ALT 1990: 314-324
4		Yasubumi Sakakibara: Learning Context-Free Grammars from Structural Data in Polynomial Time. Theor. Comput. Sci. 76(2-3): 223-242 (1990)
	1988
3		Yasubumi Sakakibara: Learning Context-Free Grammars from Structural Data in Polynomial Time. COLT 1988: 330-344
2		Yasubumi Sakakibara: An Efficient Learning of Context-Free Grammars for Bottom-Up Parsers. FGCS 1988: 447-454
	1986
1		Yasubumi Sakakibara: Programming in Modal Logic: An Extension of PROLOG based on Modal Logic. LP 1986: 81-91

Coauthor Index

1	Kiyoshi Asai	[45] [47] [48] [49] [53]
2	Michael Brown	[11] [12]
3	Claudio Ferretti	[18]
4	Christoph Globig	[17]
5	Mostefa Golea	[15]
6	Tsuyoshi Hachiya	[51] [52]
7	Michiaki Hamada	[48] [53]
8	David Haussler	[11] [12]
9	Kunihiko Hiraishi	[5]
10	Takahiro Hohsaka	[29]
11	Richard Hughey	[12]
12	Hiroshi Imai	[26] [30]
13	Mitsuhiro Itaya	[50]
14	Klaus P. Jantke	[13] [17]
15	Yuji Kawada	[41] [42]
16	Hisanori Kiryu	[48]
17	Satoshi Kobayashi	[22] [23] [25] [32] [43]
18	Mitsuhiro Kondo	[19]
19	Junna Kuramochi	[40]
20	Steffen Lange	[13] [17]
21	Hiroshi Matsui	[31] [37] [48]
22	Masahiro Matsuoka	[15]
23	I. Saira Mian	[11] [12]
24	Toutai Mituyama	[48] [49] [53]
25	Hidenori Muramatsu	[20]
26	Nobuyoshi Nagamine	[46]
27	Hirotaka Nakagawa	[39]
28	Yusuke Nakagawa	[50]
29	Tetsuro Nishino	[43]
30	Nana Ogawa	[45]
31	Yasunori Osana	[51] [52]
32	Georgios Paliouras	[33] [44]
33	Kris Popendorf	[45] [51] [52]
34	Kensaku Sakamoto	[39]
35	Kengo Sato	[31] [37] [38] [43] [45] [47] [48] [49] [53]
36	Rani Siromoney	[9]
37	Kimmen Sjölander	[12]
38	Yasuo Tabei	[48]
39	Yuji Takada	[5]
40	Goro Terai	[48]
41	Etsuji Tomita	[43]
42	Kenji Tsuge	[50]
43	Rebecca C. Underwood	[11] [12]
44	Hiroshi Yanagawa	[50]
45	Takashi Yokomori	[25] [32]
46	Katsuyuki Yugi	[50]

Colors in the list of coauthors