| 2009 | ||
|---|---|---|
| 83 | Adriana Muñoz, David Sankoff: Rearrangement Phylogeny of Genomes in Contig Form. ISBRA 2009: 160-172 | |
| 82 | Zhenyu Yang, David Sankoff: Natural Parameter Values for Generalized Gene Adjacency. RECOMB-CG 2009: 13-23 | |
| 81 | Zaky Adam, David Sankoff: A Statistically Fair Comparison of Ancestral Genome Reconstructions, Based on Breakpoint and Rearrangement Distances. RECOMB-CG 2009: 193-204 | |
| 80 | Robert Warren, David Sankoff: Genome aliquoting with double cut and join. BMC Bioinformatics 10(S-1): (2009) | |
| 79 | Eric Tannier, Chunfang Zheng, David Sankoff: Multichromosomal median and halving problems under different genomic distances. BMC Bioinformatics 10: (2009) | |
| 78 | Qian Zhu, Zaky Adam, Vicky Choi, David Sankoff: Generalized Gene Adjacencies, Graph Bandwidth, and Clusters in Yeast Evolution. IEEE/ACM Trans. Comput. Biology Bioinform. 6(2): 213-220 (2009) | |
| 77 | Robert Warren, David Sankoff: Genome Halving with Double Cut and Join. J. Bioinformatics and Computational Biology 7(2): 357-371 (2009) | |
| 76 | Chunfang Zheng, P. Kerr Wall, James Leebens-Mack, Claude de Pamphilis, Victor A. Albert, David Sankoff: Gene Loss under Neighborhood Selection Following Whole genome Duplication and the Reconstruction of the Ancestral Populus genome. J. Bioinformatics and Computational Biology 7(3): 499-520 (2009) | |
| 2008 | ||
| 75 | Robert Warren, David Sankoff: Genome Halving with Double Cut and Join. APBC 2008: 231-240 | |
| 74 | Ximing Xu, David Sankoff: Tests for Gene Clusters Satisfying the Generalized Adjacency Criterion. BSB 2008: 152-160 | |
| 73 | Shenggang Li, Miguel A. Andrade-Navarro, David Sankoff: A Customized Class of Functions for Modeling and Clustering Gene Expression Profiles in Embryonic Stem Cells. BSB 2008: 92-103 | |
| 72 | Andrew Wei Xu, Benoît Alain, David Sankoff: Poisson adjacency distributions in genome comparison: multichromosomal, circular, signed and unsigned cases. ECCB 2008: 146-152 | |
| 71 | Qian Zhu, Zaky Adam, Vicky Choi, David Sankoff: Generalized Gene Adjacencies, Graph Bandwidth and Clusters in Yeast Evolution. ISBRA 2008: 134-145 | |
| 70 | Mariana Kant, Maurice LeBon, David Sankoff: Hierarchical Clustering Using Constraints. ISBRA 2008: 2-13 | |
| 69 | Chunfang Zheng, Qian Zhu, Zaky Adam, David Sankoff: Guided genome halving: hardness, heuristics and the history of the Hemiascomycetes. ISMB 2008: 96-104 | |
| 68 | David Sankoff, Chunfang Zheng, P. Kerr Wall, Claude W. dePamphilis, James Leebens-Mack, Victor A. Albert: Internal Validation of Ancestral Gene Order Reconstruction in Angiosperm Phylogeny. RECOMB-CG 2008: 252-264 | |
| 67 | Eric Tannier, Chunfang Zheng, David Sankoff: Multichromosomal Genome Median and Halving Problems. WABI 2008: 1-13 | |
| 66 | Andrew Wei Xu, David Sankoff: Decompositions of Multiple Breakpoint Graphs and Rapid Exact Solutions to the Median Problem. WABI 2008: 25-37 | |
| 65 | Chunfang Zheng, Qian Zhu, David Sankoff: Descendants of Whole Genome Duplication within Gene Order Phylogeny. Journal of Computational Biology 15(8): 947-964 (2008) | |
| 2007 | ||
| 64 | David Sankoff, Lusheng Wang, Francis Chin: Proceedings of 5th Asia-Pacific Bioinformatics Conference, APBC 2007, 15-17 January 2007, Hong Kong, China Imperial College Press 2007 | |
| 63 | David Sankoff, Lusheng Wang, Francis Chin: Preface. APBC 2007 | |
| 62 | David Sankoff, Chunfang Zheng, Qian Zhu: Polyploids, genome halving and phylogeny. ISMB/ECCB (Supplement of Bioinformatics) 2007: 433-439 | |
| 61 | Chunfang Zheng, Qian Zhu, David Sankoff: Parts of the Problem of Polyploids in Rearrangement Phylogeny. RECOMB-CG 2007: 162-176 | |
| 60 | Vicky Choi, Chunfang Zheng, Qian Zhu, David Sankoff: Algorithms for the Extraction of Synteny Blocks from Comparative Maps. WABI 2007: 277-288 | |
| 59 | Chunfang Zheng, Qian Zhu, David Sankoff: Removing Noise and Ambiguities from Comparative Maps in Rearrangement Analysis. IEEE/ACM Trans. Comput. Biology Bioinform. 4(4): 515-522 (2007) | |
| 58 | Wei Xu, Chunfang Zheng, David Sankoff: Paths and Cycles in Breakpoint Graph of Random Multichromosomal Genomes. Journal of Computational Biology 14(4): 423-435 (2007) | |
| 57 | Zaky Adam, Monique Turmel, Claude Lemieux, David Sankoff: Common Intervals and Symmetric Difference in a Model-Free Phylogenomics, with an Application to Streptophyte Evolution. Journal of Computational Biology 14(4): 436-445 (2007) | |
| 2006 | ||
| 56 | Andrew Wei Xu, Chunfang Zheng, David Sankoff: Paths and Cycles in Breakpoint Graphs of Random Multichromosomal Genomes. Comparative Genomics 2006: 51-62 | |
| 55 | Zaky Adam, Monique Turmel, Claude Lemieux, David Sankoff: Common Intervals and Symmetric Difference in a Model-Free Phylogenomics, with an Application to Streptophyte Evolution. Comparative Genomics 2006: 63-74 | |
| 54 | Chunfang Zheng, David Sankoff: Rearrangement of Noisy Genomes. International Conference on Computational Science (2) 2006: 791-798 | |
| 53 | David Sankoff: Statistical Evaluation of Genome Rearrangement. RECOMB 2006: 84-84 | |
| 52 | Chunfang Zheng, David Sankoff: Genome rearrangements with partially ordered chromosomes. J. Comb. Optim. 11(2): 133-144 (2006) | |
| 51 | Matthew Mazowita, Lani Haque, David Sankoff: Stability of Rearrangement Measures in the Comparison of Genome Sequences. Journal of Computational Biology 13(2): 554-566 (2006) | |
| 50 | David Sankoff, Lani Haque: The Distribution of Genomic Distance between Random Genomes. Journal of Computational Biology 13(5): 1005-1012 (2006) | |
| 2005 | ||
| 49 | Chunfang Zheng, David Sankoff: Genome Rearrangements with Partially Ordered Chromosomes. COCOON 2005: 52-62 | |
| 48 | David Sankoff, Lani Haque: Power Boosts for Cluster Tests. Comparative Genomics 2005: 121-130 | |
| 47 | David Sankoff, Chunfang Zheng, Aleksander Lenert: Reversals of Fortune. Comparative Genomics 2005: 131-141 | |
| 46 | Chunfang Zheng, Aleksander Lenert, David Sankoff: Reversal distance for partially ordered genomes. ISMB (Supplement of Bioinformatics) 2005: 502-508 | |
| 45 | David Sankoff, Matthew Mazowita: Stability of Rearrangement Measures in the Comparison of Genome Sequences. RECOMB 2005: 603-614 | |
| 44 | David Sankoff, Phil Trinh: Chromosomal Breakpoint Reuse in Genome Sequence Rearrangement. Journal of Computational Biology 12(6): 812-821 (2005) | |
| 43 | Rose Hoberman, David Sankoff, Dannie Durand: The Statistical Analysis of Spatially Clustered Genes under the Maximum Gap Criterion. Journal of Computational Biology 12(8): 1083-1102 (2005) | |
| 2004 | ||
| 42 | David Sankoff, Matthew Mazowita: Estimators of Translocations and Inversions in Comparative Maps. Comparative Genomics 2004: 109-122 | |
| 41 | Rose Hoberman, David Sankoff, Dannie Durand: The Statistical Significance of Max-Gap Clusters. Comparative Genomics 2004: 55-71 | |
| 40 | David Sankoff, Jean-François Lefebvre, Elisabeth R. M. Tillier, Adrian Maler, Nadia El-Mabrouk: The Distribution of Inversion Lengths in Bacteria. Comparative Genomics 2004: 97-108 | |
| 39 | Phil Trinh, Aoife McLysaght, David Sankoff: Genomic features in the breakpoint regions between syntenic blocks. ISMB/ECCB (Supplement of Bioinformatics) 2004: 318-325 | |
| 38 | David Sankoff, Phil Trinh: Chromosomal breakpoint re-use in the inference of genome sequence rearrangement. RECOMB 2004: 30-35 | |
| 37 | Guillaume Bourque, David Sankoff: Improving Gene Network Inference by Comparing Expression Time-series across Species, Developmental Stages or Tissues. J. Bioinformatics and Computational Biology 2(4): 765-784 (2004) | |
| 36 | Raffaele Giancarlo, David Sankoff: Editorial: Combinatiorial Pattern Matching. J. Discrete Algorithms 2(2): 135-136 (2004) | |
| 2003 | ||
| 35 | Jean-François Lefebvre, Nadia El-Mabrouk, Elisabeth R. M. Tillier, David Sankoff: Detection and validation of single gene inversions. ISMB (Supplement of Bioinformatics) 2003: 190-196 | |
| 34 | Dannie Durand, David Sankoff: Tests for Gene Clustering. Journal of Computational Biology 10(3/4): 453-482 (2003) | |
| 33 | Nadia El-Mabrouk, David Sankoff: The Reconstruction of Doubled Genomes. SIAM J. Comput. 32(3): 754-792 (2003) | |
| 2002 | ||
| 32 | Dannie Durand, David Sankoff: Tests for gene clustering. RECOMB 2002: 144-154 | |
| 31 | David Sankoff: Short inversions and conserved gene clusters. SAC 2002: 164-167 | |
| 30 | David Sankoff: Short inversions and conserved gene cluster. Bioinformatics 18(10): 1305 (2002) | |
| 2000 | ||
| 29 | Raffaele Giancarlo, David Sankoff: Combinatorial Pattern Matching, 11th Annual Symposium, CPM 2000, Montreal, Canada, June 21-23, 2000, Proceedings Springer 2000 | |
| 28 | David Sankoff, David Bryant, Mélanie Deneault, B. Franz Lang, Gertraud Burger: Early eukaryote evolution based on mitochondrial gene order breakpoints. RECOMB 2000: 254-262 | |
| 27 | David Sankoff: The early introduction of dynamic programming into computational biology. Bioinformatics 16(1): 41-47 (2000) | |
| 26 | David Sankoff, David Bryant, Mélanie Deneault, B. Franz Lang, Gertraud Burger: Early Eukaryote Evolution Based on Mitochondrial Gene Order Breakpoints. Journal of Computational Biology 7(3-4): 521-535 (2000) | |
| 1999 | ||
| 25 | Nadia El-Mabrouk, David Sankoff: Hybridization and Genome Rearrangement. CPM 1999: 78-87 | |
| 24 | Nadia El-Mabrouk, David Bryant, David Sankoff: Reconstructing the pre-doubling genome. RECOMB 1999: 154-163 | |
| 23 | David Sankoff, Mathieu Blanchette: Probability models for genome rearrangement and linear invariants for phylogenetic inference. RECOMB 1999: 302-309 | |
| 22 | Won-Sook Lee, Pierre Beylot, David Sankoff, Nadia Magnenat-Thalmann: Generating 3D Virtual Populations from Pictures of a Few Individuals. WADS 1999: 134-144 | |
| 21 | David Sankoff: Genome rearrangement with gene families. Bioinformatics 15(11): 909-917 (1999) | |
| 20 | David Bryant, David Sankoff: Phylogenetic Reconstruction from Genome Order Data. Electronic Notes in Discrete Mathematics 2: 158 (1999) | |
| 19 | David Sankoff, Mathieu Blanchette: Phylogenetic Invariants for Genome Rearrangements. Journal of Computational Biology 6(3/4): (1999) | |
| 1998 | ||
| 18 | Janice I. Glasgow, Timothy G. Littlejohn, François Major, Richard H. Lathrop, David Sankoff, Christoph Sensen: Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28 - July 1, 1998 AAAI 1998 | |
| 17 | David Sankoff: The Production of Code-Mixed Discourse. COLING-ACL 1998: 8-21 | |
| 16 | Nadia El-Mabrouk, Joseph H. Nadeau, David Sankoff: Genome Halving. CPM 1998: 235-250 | |
| 15 | David Sankoff, Mathieu Blanchette: Multiple genome rearrangements. RECOMB 1998: 243-247 | |
| 14 | David Sankoff, Mathieu Blanchette: Multiple Genome Rearrangement and Breakpoint Phylogeny. Journal of Computational Biology 5(3): 555-570 (1998) | |
| 1997 | ||
| 13 | David Sankoff, Mathieu Blanchette: The Median Problem for Breakpoints in Comparative Genomics. COCOON 1997: 251-264 | |
| 12 | David Sankoff, Marie-Noelle Parent, Isabelle Marchand, Vincent Ferretti: On the Nadeau-Taylor Theory of Conserved Chromosome Segments. CPM 1997: 262-274 | |
| 11 | David Sankoff, Vincent Ferretti, Joseph H. Nadeau: Conserved segment identification. RECOMB 1997: 252-256 | |
| 10 | David Sankoff, Vincent Ferretti, Joseph H. Nadeau: Conserved Segment Identification. Journal of Computational Biology 4(4): 559- (1997) | |
| 1996 | ||
| 9 | Vincent Ferretti, Joseph H. Nadeau, David Sankoff: Original Synteny. CPM 1996: 159-167 | |
| 8 | David Sankoff, Joseph H. Nadeau: Conserved Synteny As a Measure of Genomic Distance. Discrete Applied Mathematics 71(1-3): 247-257 (1996) | |
| 7 | David Sankoff, Gopal Sundaram, John D. Kececioglu: Steiner Points in the Space of Genome Rearrangements. Int. J. Found. Comput. Sci. 7(1): 1-9 (1996) | |
| 1995 | ||
| 6 | John D. Kececioglu, David Sankoff: Exact and Approximation Algorithms for Sorting by Reversals, with Application to Genome Rearrangement. Algorithmica 13(1/2): 180-210 (1995) | |
| 1994 | ||
| 5 | John D. Kececioglu, David Sankoff: Efficient Bounds for Oriented Chromosome Inversion Distance. CPM 1994: 307-325 | |
| 1993 | ||
| 4 | John D. Kececioglu, David Sankoff: Exact and Approximation Algorithms for the Inversion Distance Between Two Chromosomes. CPM 1993: 87-105 | |
| 1992 | ||
| 3 | David Sankoff: Edit Distances for Genome Comparisons Based on Non-Local Operations. CPM 1992: 121-135 | |
| 1982 | ||
| 2 | David Sankoff, R. J. Cedergren, W. McKay: A strategy for sequence phylogeny research. Nucleic Acids Research 10(1): 421-431 (1982) | |
| 1971 | ||
| 1 | David Sankoff: Dictionary Structure and Probability Measures Information and Control 19(2): 104-113 (1971) | |