David Sankoff

	2012
102		David Sankoff: Keynote: Aspects of fractionation. ICCABS 2012: 1
101		Chunfang Zheng, Victor A. Albert, Eric Lyons, David Sankoff: Ancient angiosperm hexaploidy meets ancestral eudicot gene order. ICCABS 2012: 1-6
100		David Sankoff, Chunfang Zheng, Baoyong Wang: A Model for Biased Fractionation after Whole Genome Duplication. RECOMB 2012: 244
99		Vitor Costa, Simone Dantas, David Sankoff, Ximing Xu: Gene clusters as intersections of powers of paths. J. Braz. Comp. Soc. 18(2): 129-136 (2012)
	2011
98		Zhenyu Yang, David Sankoff: Generalized Adjacency in Genetic Networks and the Conservation of Functional Gene Clusters. BIBM 2011: 173-178
97		Krister M. Swenson, Eric Chen, Nicholas D. Pattengale, David Sankoff: The Kernel of Maximum Agreement Subtrees. ISBRA 2011: 123-135
96		David Sankoff: OMG! Orthologs for Multiple Genomes - Competing Formulations - (Keynote Talk). ISBRA 2011: 2-3
95		Chunfang Zheng, David Sankoff: Gene Order in Rosid Phylogeny, Inferred from Pairwise Syntenies among Extant Genomes. ISBRA 2011: 99-110
94		Chunfang Zheng, Krister M. Swenson, Eric Lyons, David Sankoff: OMG! Orthologs in Multiple Genomes - Competing Graph-Theoretical Formulations. WABI 2011: 364-375
	2010
93		Bernard M. E. Moret, Webb Miller, Pavel A. Pevzner, David Sankoff: Session Introduction. Pacific Symposium on Biocomputing 2010: 1-2
92		Robert Warren, David Sankoff: Genome Aliquoting Revisited. RECOMB-CG 2010: 1-12
91		Ghada Badr, Krister M. Swenson, David Sankoff: Listing All Parsimonious Reversal Sequences: New Algorithms and Perspectives. RECOMB-CG 2010: 39-49
90		Haitao Jiang, Chunfang Zheng, David Sankoff, Binhai Zhu: Scaffold Filling under the Breakpoint Distance. RECOMB-CG 2010: 83-92
89		Krister M. Swenson, Ghada Badr, David Sankoff: Listing All Sorting Reversals in Quadratic Time. WABI 2010: 102-110
88		Adriana Muñoz, Chunfang Zheng, Qian Zhu, Victor A. Albert, Steve Rounsley, David Sankoff: Scaffold filling, contig fusion and comparative gene order inference. BMC Bioinformatics 11: 304 (2010)
87		Adriana Muñoz, David Sankoff: Rearrangement Phylogeny of Genomes in Contig Form. IEEE/ACM Trans. Comput. Biology Bioinform. 7(4): 579-587 (2010)
	2009
86		Adriana Muñoz, David Sankoff: Rearrangement Phylogeny of Genomes in Contig Form. ISBRA 2009: 160-172
85		Bernard M. E. Moret, Webb Miller, Pavel A. Pevzner, David Sankoff: Session Introduction. Pacific Symposium on Biocomputing 2009: 111-113
84		Zhenyu Yang, David Sankoff: Natural Parameter Values for Generalized Gene Adjacency. RECOMB-CG 2009: 13-23
83		Zaky Adam, David Sankoff: A Statistically Fair Comparison of Ancestral Genome Reconstructions, Based on Breakpoint and Rearrangement Distances. RECOMB-CG 2009: 193-204
82		Robert Warren, David Sankoff: Genome aliquoting with double cut and join. BMC Bioinformatics 10(S-1): (2009)
81		Eric Tannier, Chunfang Zheng, David Sankoff: Multichromosomal median and halving problems under different genomic distances. BMC Bioinformatics 10: (2009)
80		Qian Zhu, Zaky Adam, Vicky Choi, David Sankoff: Generalized Gene Adjacencies, Graph Bandwidth, and Clusters in Yeast Evolution. IEEE/ACM Trans. Comput. Biology Bioinform. 6(2): 213-220 (2009)
79		Robert Warren, David Sankoff: Genome Halving with Double Cut and Join. J. Bioinformatics and Computational Biology 7(2): 357-371 (2009)
78		Chunfang Zheng, P. Kerr Wall, James Leebens-Mack, Claude de Pamphilis, Victor A. Albert, David Sankoff: Gene Loss under Neighborhood Selection Following Whole genome Duplication and the Reconstruction of the Ancestral Populus genome. J. Bioinformatics and Computational Biology 7(3): 499-520 (2009)
77		David Sankoff, Chunfang Zheng, Adriana Muñoz, Zhenyu Yang, Zaky Adam, Robert Warren, Vicky Choi, Qian Zhu: Issues in the Reconstruction of Gene Order Evolution. J. Comput. Sci. Technol. 25(1): 10-25 (2009)
	2008
76		Robert Warren, David Sankoff: Genome Halving with Double Cut and Join. APBC 2008: 231-240
75		Ximing Xu, David Sankoff: Tests for Gene Clusters Satisfying the Generalized Adjacency Criterion. BSB 2008: 152-160
74		Shenggang Li, Miguel A. Andrade-Navarro, David Sankoff: A Customized Class of Functions for Modeling and Clustering Gene Expression Profiles in Embryonic Stem Cells. BSB 2008: 92-103
73		Andrew Wei Xu, Benoît Alain, David Sankoff: Poisson adjacency distributions in genome comparison: multichromosomal, circular, signed and unsigned cases. ECCB 2008: 146-152
72		Qian Zhu, Zaky Adam, Vicky Choi, David Sankoff: Generalized Gene Adjacencies, Graph Bandwidth and Clusters in Yeast Evolution. ISBRA 2008: 134-145
71		Mariana Kant, Maurice LeBon, David Sankoff: Hierarchical Clustering Using Constraints. ISBRA 2008: 2-13
70		Chunfang Zheng, Qian Zhu, Zaky Adam, David Sankoff: Guided genome halving: hardness, heuristics and the history of the Hemiascomycetes. ISMB 2008: 96-104
69		David Sankoff, Chunfang Zheng, P. Kerr Wall, Claude W. dePamphilis, James Leebens-Mack, Victor A. Albert: Internal Validation of Ancestral Gene Order Reconstruction in Angiosperm Phylogeny. RECOMB-CG 2008: 252-264
68		Eric Tannier, Chunfang Zheng, David Sankoff: Multichromosomal Genome Median and Halving Problems. WABI 2008: 1-13
67		Andrew Wei Xu, David Sankoff: Decompositions of Multiple Breakpoint Graphs and Rapid Exact Solutions to the Median Problem. WABI 2008: 25-37
66		Chunfang Zheng, Qian Zhu, David Sankoff: Descendants of Whole Genome Duplication within Gene Order Phylogeny. Journal of Computational Biology 15(8): 947-964 (2008)
	2007
65		David Sankoff, Lusheng Wang, Francis Chin: Proceedings of 5th Asia-Pacific Bioinformatics Conference, APBC 2007, 15-17 January 2007, Hong Kong, China Imperial College Press 2007
64		David Sankoff, Lusheng Wang, Francis Chin: Preface. APBC 2007
63		David Sankoff, Chunfang Zheng, Qian Zhu: Polyploids, genome halving and phylogeny. ISMB/ECCB (Supplement of Bioinformatics) 2007: 433-439
62		Chunfang Zheng, Qian Zhu, David Sankoff: Parts of the Problem of Polyploids in Rearrangement Phylogeny. RECOMB-CG 2007: 162-176
61		Vicky Choi, Chunfang Zheng, Qian Zhu, David Sankoff: Algorithms for the Extraction of Synteny Blocks from Comparative Maps. WABI 2007: 277-288
60		Chunfang Zheng, Qian Zhu, David Sankoff: Removing Noise and Ambiguities from Comparative Maps in Rearrangement Analysis. IEEE/ACM Trans. Comput. Biology Bioinform. 4(4): 515-522 (2007)
59		Wei Xu, Chunfang Zheng, David Sankoff: Paths and Cycles in Breakpoint Graph of Random Multichromosomal Genomes. Journal of Computational Biology 14(4): 423-435 (2007)
58		Zaky Adam, Monique Turmel, Claude Lemieux, David Sankoff: Common Intervals and Symmetric Difference in a Model-Free Phylogenomics, with an Application to Streptophyte Evolution. Journal of Computational Biology 14(4): 436-445 (2007)
	2006
57		Andrew Wei Xu, Chunfang Zheng, David Sankoff: Paths and Cycles in Breakpoint Graphs of Random Multichromosomal Genomes. Comparative Genomics 2006: 51-62
56		Zaky Adam, Monique Turmel, Claude Lemieux, David Sankoff: Common Intervals and Symmetric Difference in a Model-Free Phylogenomics, with an Application to Streptophyte Evolution. Comparative Genomics 2006: 63-74
55		Chunfang Zheng, David Sankoff: Rearrangement of Noisy Genomes. International Conference on Computational Science (2) 2006: 791-798
54		David Sankoff: Statistical Evaluation of Genome Rearrangement. RECOMB 2006: 84-84
53		Chunfang Zheng, David Sankoff: Genome rearrangements with partially ordered chromosomes. J. Comb. Optim. 11(2): 133-144 (2006)
52		Matthew Mazowita, Lani Haque, David Sankoff: Stability of Rearrangement Measures in the Comparison of Genome Sequences. Journal of Computational Biology 13(2): 554-566 (2006)
51		David Sankoff, Lani Haque: The Distribution of Genomic Distance between Random Genomes. Journal of Computational Biology 13(5): 1005-1012 (2006)
50		David Sankoff: The Signal in the Genomes. PLoS Computational Biology 2(4): (2006)
	2005
49		Chunfang Zheng, David Sankoff: Genome Rearrangements with Partially Ordered Chromosomes. COCOON 2005: 52-62
48		David Sankoff, Lani Haque: Power Boosts for Cluster Tests. Comparative Genomics 2005: 121-130
47		David Sankoff, Chunfang Zheng, Aleksander Lenert: Reversals of Fortune. Comparative Genomics 2005: 131-141
46		Chunfang Zheng, Aleksander Lenert, David Sankoff: Reversal distance for partially ordered genomes. ISMB (Supplement of Bioinformatics) 2005: 502-508
45		David Sankoff, Matthew Mazowita: Stability of Rearrangement Measures in the Comparison of Genome Sequences. RECOMB 2005: 603-614
44		David Sankoff, Phil Trinh: Chromosomal Breakpoint Reuse in Genome Sequence Rearrangement. Journal of Computational Biology 12(6): 812-821 (2005)
43		Rose Hoberman, David Sankoff, Dannie Durand: The Statistical Analysis of Spatially Clustered Genes under the Maximum Gap Criterion. Journal of Computational Biology 12(8): 1083-1102 (2005)
	2004
42		David Sankoff, Matthew Mazowita: Estimators of Translocations and Inversions in Comparative Maps. Comparative Genomics 2004: 109-122
41		Rose Hoberman, David Sankoff, Dannie Durand: The Statistical Significance of Max-Gap Clusters. Comparative Genomics 2004: 55-71
40		David Sankoff, Jean-François Lefebvre, Elisabeth R. M. Tillier, Adrian Maler, Nadia El-Mabrouk: The Distribution of Inversion Lengths in Bacteria. Comparative Genomics 2004: 97-108
39		Phil Trinh, Aoife McLysaght, David Sankoff: Genomic features in the breakpoint regions between syntenic blocks. ISMB/ECCB (Supplement of Bioinformatics) 2004: 318-325
38		David Sankoff, Phil Trinh: Chromosomal breakpoint re-use in the inference of genome sequence rearrangement. RECOMB 2004: 30-35
37		Guillaume Bourque, David Sankoff: Improving Gene Network Inference by Comparing Expression Time-series across Species, Developmental Stages or Tissues. J. Bioinformatics and Computational Biology 2(4): 765-784 (2004)
36		Raffaele Giancarlo, David Sankoff: Editorial: Combinatiorial Pattern Matching. J. Discrete Algorithms 2(2): 135-136 (2004)
	2003
35		Jean-François Lefebvre, Nadia El-Mabrouk, Elisabeth R. M. Tillier, David Sankoff: Detection and validation of single gene inversions. ISMB (Supplement of Bioinformatics) 2003: 190-196
34		Dannie Durand, David Sankoff: Tests for Gene Clustering. Journal of Computational Biology 10(3/4): 453-482 (2003)
33		Nadia El-Mabrouk, David Sankoff: The Reconstruction of Doubled Genomes. SIAM J. Comput. 32(3): 754-792 (2003)
	2002
32		Dannie Durand, David Sankoff: Tests for gene clustering. RECOMB 2002: 144-154
31		David Sankoff: Short inversions and conserved gene clusters. SAC 2002: 164-167
30		David Sankoff: Short inversions and conserved gene cluster. Bioinformatics 18(10): 1305 (2002)
	2000
29		Raffaele Giancarlo, David Sankoff: Combinatorial Pattern Matching, 11th Annual Symposium, CPM 2000, Montreal, Canada, June 21-23, 2000, Proceedings Springer 2000
28		David Sankoff, David Bryant, Mélanie Deneault, B. Franz Lang, Gertraud Burger: Early eukaryote evolution based on mitochondrial gene order breakpoints. RECOMB 2000: 254-262
27		David Sankoff: The early introduction of dynamic programming into computational biology. Bioinformatics 16(1): 41-47 (2000)
26		David Sankoff, David Bryant, Mélanie Deneault, B. Franz Lang, Gertraud Burger: Early Eukaryote Evolution Based on Mitochondrial Gene Order Breakpoints. Journal of Computational Biology 7(3-4): 521-535 (2000)
	1999
25		Nadia El-Mabrouk, David Sankoff: Hybridization and Genome Rearrangement. CPM 1999: 78-87
24		Nadia El-Mabrouk, David Bryant, David Sankoff: Reconstructing the pre-doubling genome. RECOMB 1999: 154-163
23		David Sankoff, Mathieu Blanchette: Probability models for genome rearrangement and linear invariants for phylogenetic inference. RECOMB 1999: 302-309
22		Won-Sook Lee, Pierre Beylot, David Sankoff, Nadia Magnenat-Thalmann: Generating 3D Virtual Populations from Pictures of a Few Individuals. WADS 1999: 134-144
21		David Sankoff: Genome rearrangement with gene families. Bioinformatics 15(11): 909-917 (1999)
20		David Bryant, David Sankoff: Phylogenetic Reconstruction from Genome Order Data. Electronic Notes in Discrete Mathematics 2: 158 (1999)
19		David Sankoff, Mathieu Blanchette: Phylogenetic Invariants for Genome Rearrangements. Journal of Computational Biology 6(3/4): (1999)
	1998
18		Janice I. Glasgow, Timothy G. Littlejohn, François Major, Richard H. Lathrop, David Sankoff, Christoph Sensen: Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28 - July 1, 1998 AAAI 1998
17		David Sankoff: The Production of Code-Mixed Discourse. COLING-ACL 1998: 8-21
16		Nadia El-Mabrouk, Joseph H. Nadeau, David Sankoff: Genome Halving. CPM 1998: 235-250
15		David Sankoff, Mathieu Blanchette: Multiple genome rearrangements. RECOMB 1998: 243-247
14		David Sankoff, Mathieu Blanchette: Multiple Genome Rearrangement and Breakpoint Phylogeny. Journal of Computational Biology 5(3): 555-570 (1998)
	1997
13		David Sankoff, Mathieu Blanchette: The Median Problem for Breakpoints in Comparative Genomics. COCOON 1997: 251-264
12		David Sankoff, Marie-Noelle Parent, Isabelle Marchand, Vincent Ferretti: On the Nadeau-Taylor Theory of Conserved Chromosome Segments. CPM 1997: 262-274
11		David Sankoff, Vincent Ferretti, Joseph H. Nadeau: Conserved segment identification. RECOMB 1997: 252-256
10		David Sankoff, Vincent Ferretti, Joseph H. Nadeau: Conserved Segment Identification. Journal of Computational Biology 4(4): 559- (1997)
	1996
9		Vincent Ferretti, Joseph H. Nadeau, David Sankoff: Original Synteny. CPM 1996: 159-167
8		David Sankoff, Joseph H. Nadeau: Conserved Synteny As a Measure of Genomic Distance. Discrete Applied Mathematics 71(1-3): 247-257 (1996)
7		David Sankoff, Gopal Sundaram, John D. Kececioglu: Steiner Points in the Space of Genome Rearrangements. Int. J. Found. Comput. Sci. 7(1): 1-9 (1996)
	1995
6		John D. Kececioglu, David Sankoff: Exact and Approximation Algorithms for Sorting by Reversals, with Application to Genome Rearrangement. Algorithmica 13(1/2): 180-210 (1995)
	1994
5		John D. Kececioglu, David Sankoff: Efficient Bounds for Oriented Chromosome Inversion Distance. CPM 1994: 307-325
	1993
4		John D. Kececioglu, David Sankoff: Exact and Approximation Algorithms for the Inversion Distance Between Two Chromosomes. CPM 1993: 87-105
	1992
3		David Sankoff: Edit Distances for Genome Comparisons Based on Non-Local Operations. CPM 1992: 121-135
	1982
2		David Sankoff, R. J. Cedergren, W. McKay: A strategy for sequence phylogeny research. Nucleic Acids Research 10(1): 421-431 (1982)
	1971
1		David Sankoff: Dictionary Structure and Probability Measures Information and Control 19(2): 104-113 (1971)

Coauthor Index

1	Zaky Adam	[56] [58] [70] [72] [77] [80] [83]
2	Benoît Alain	[73]
3	Victor A. Albert	[69] [78] [88] [101]
4	Miguel A. Andrade-Navarro (Miguel A. Andrade)	[74]
5	Ghada Hany Badr (Ghada Badr)	[89] [91]
6	Pierre Beylot	[22]
7	Mathieu Blanchette	[13] [14] [15] [19] [23]
8	Guillaume Bourque	[37]
9	David Bryant	[20] [24] [26] [28]
10	Gertraud Burger	[26] [28]
11	R. J. Cedergren	[2]
12	Eric Chen	[97]
13	Francis Chin	[64] [65]
14	Vicky Choi	[61] [72] [77] [80]
15	Vitor Costa	[99]
16	Simone Dantas	[99]
17	Mélanie Deneault	[26] [28]
18	Dannie Durand	[32] [34] [41] [43]
19	Nadia El-Mabrouk	[16] [24] [25] [33] [35] [40]
20	Vincent Ferretti	[9] [10] [11] [12]
21	Raffaele Giancarlo	[29] [36]
22	Janice I. Glasgow	[18]
23	Lani Haque	[48] [51] [52]
24	Rose Hoberman	[41] [43]
25	Haitao Jiang	[90]
26	Mariana Kant	[71]
27	John D. Kececioglu	[4] [5] [6] [7]
28	B. Franz Lang	[26] [28]
29	Richard H. Lathrop	[18]
30	Maurice LeBon	[71]
31	Won-Sook Lee	[22]
32	James Leebens-Mack	[69] [78]
33	Jean-François Lefebvre	[35] [40]
34	Claude Lemieux	[56] [58]
35	Aleksander Lenert	[46] [47]
36	Shenggang Li	[74]
37	Timothy G. Littlejohn	[18]
38	Eric Lyons	[94] [101]
39	Nadia Magnenat-Thalmann	[22]
40	François Major	[18]
41	Adrian Maler	[40]
42	Isabelle Marchand	[12]
43	Matthew Mazowita	[42] [45] [52]
44	W. McKay	[2]
45	Aoife McLysaght	[39]
46	Webb Miller (Webb C. Miller)	[85] [93]
47	Bernard M. E. Moret	[85] [93]
48	Adriana Muñoz	[77] [86] [87] [88]
49	Joseph H. Nadeau	[8] [9] [10] [11] [16]
50	Claude de Pamphilis	[78]
51	Marie-Noelle Parent	[12]
52	Nicholas D. Pattengale	[97]
53	Pavel A. Pevzner	[85] [93]
54	Steve Rounsley	[88]
55	Christoph Sensen	[18]
56	Gopal Sundaram	[7]
57	Krister M. Swenson	[89] [91] [94] [97]
58	Eric Tannier	[68] [81]
59	Elisabeth R. M. Tillier	[35] [40]
60	Phil Trinh	[38] [39] [44]
61	Monique Turmel	[56] [58]
62	P. Kerr Wall	[69] [78]
63	Baoyong Wang	[100]
64	Lusheng Wang	[64] [65]
65	Robert Warren	[76] [77] [79] [82] [92]
66	Andrew Wei Xu	[57] [67] [73]
67	Wei Xu	[59]
68	Ximing Xu	[75] [99]
69	Zhenyu Yang	[77] [84] [98]
70	Chunfang Zheng	[46] [47] [49] [53] [55] [57] [59] [60] [61] [62] [63] [66] [68] [69] [70] [77] [78] [81] [88] [90] [94] [95] [100] [101]
71	Binhai Zhu	[90]
72	Qian Zhu	[60] [61] [62] [63] [66] [70] [72] [77] [80] [88]
73	Claude W. dePamphilis	[69]

Colors in the list of coauthors

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