 | 2009 |
|---|
| 83 |       | Adriana Muñoz,
David Sankoff:
Rearrangement Phylogeny of Genomes in Contig Form.
ISBRA 2009: 160-172 |
| 82 | | Zhenyu Yang,
David Sankoff:
Natural Parameter Values for Generalized Gene Adjacency.
RECOMB-CG 2009: 13-23 |
| 81 | | Zaky Adam,
David Sankoff:
A Statistically Fair Comparison of Ancestral Genome Reconstructions, Based on Breakpoint and Rearrangement Distances.
RECOMB-CG 2009: 193-204 |
| 80 | | Robert Warren,
David Sankoff:
Genome aliquoting with double cut and join.
BMC Bioinformatics 10(S-1): (2009) |
| 79 | | Eric Tannier,
Chunfang Zheng,
David Sankoff:
Multichromosomal median and halving problems under different genomic distances.
BMC Bioinformatics 10: (2009) |
| 78 | | Qian Zhu,
Zaky Adam,
Vicky Choi,
David Sankoff:
Generalized Gene Adjacencies, Graph Bandwidth, and Clusters in Yeast Evolution.
IEEE/ACM Trans. Comput. Biology Bioinform. 6(2): 213-220 (2009) |
| 77 | | Robert Warren,
David Sankoff:
Genome Halving with Double Cut and Join.
J. Bioinformatics and Computational Biology 7(2): 357-371 (2009) |
| 76 | | Chunfang Zheng,
P. Kerr Wall,
James Leebens-Mack,
Claude de Pamphilis,
Victor A. Albert,
David Sankoff:
Gene Loss under Neighborhood Selection Following Whole genome Duplication and the Reconstruction of the Ancestral Populus genome.
J. Bioinformatics and Computational Biology 7(3): 499-520 (2009) |
| 2008 |
|---|
| 75 | | Robert Warren,
David Sankoff:
Genome Halving with Double Cut and Join.
APBC 2008: 231-240 |
| 74 | | Ximing Xu,
David Sankoff:
Tests for Gene Clusters Satisfying the Generalized Adjacency Criterion.
BSB 2008: 152-160 |
| 73 | | Shenggang Li,
Miguel A. Andrade-Navarro,
David Sankoff:
A Customized Class of Functions for Modeling and Clustering Gene Expression Profiles in Embryonic Stem Cells.
BSB 2008: 92-103 |
| 72 | | Andrew Wei Xu,
Benoît Alain,
David Sankoff:
Poisson adjacency distributions in genome comparison: multichromosomal, circular, signed and unsigned cases.
ECCB 2008: 146-152 |
| 71 | | Qian Zhu,
Zaky Adam,
Vicky Choi,
David Sankoff:
Generalized Gene Adjacencies, Graph Bandwidth and Clusters in Yeast Evolution.
ISBRA 2008: 134-145 |
| 70 | | Mariana Kant,
Maurice LeBon,
David Sankoff:
Hierarchical Clustering Using Constraints.
ISBRA 2008: 2-13 |
| 69 | | Chunfang Zheng,
Qian Zhu,
Zaky Adam,
David Sankoff:
Guided genome halving: hardness, heuristics and the history of the Hemiascomycetes.
ISMB 2008: 96-104 |
| 68 | | David Sankoff,
Chunfang Zheng,
P. Kerr Wall,
Claude W. dePamphilis,
James Leebens-Mack,
Victor A. Albert:
Internal Validation of Ancestral Gene Order Reconstruction in Angiosperm Phylogeny.
RECOMB-CG 2008: 252-264 |
| 67 | | Eric Tannier,
Chunfang Zheng,
David Sankoff:
Multichromosomal Genome Median and Halving Problems.
WABI 2008: 1-13 |
| 66 | | Andrew Wei Xu,
David Sankoff:
Decompositions of Multiple Breakpoint Graphs and Rapid Exact Solutions to the Median Problem.
WABI 2008: 25-37 |
| 65 | | Chunfang Zheng,
Qian Zhu,
David Sankoff:
Descendants of Whole Genome Duplication within Gene Order Phylogeny.
Journal of Computational Biology 15(8): 947-964 (2008) |
| 2007 |
|---|
| 64 |  | David Sankoff,
Lusheng Wang,
Francis Chin:
Proceedings of 5th Asia-Pacific Bioinformatics Conference, APBC 2007, 15-17 January 2007, Hong Kong, China
Imperial College Press 2007 |
| 63 | | David Sankoff,
Lusheng Wang,
Francis Chin:
Preface.
APBC 2007 |
| 62 | | David Sankoff,
Chunfang Zheng,
Qian Zhu:
Polyploids, genome halving and phylogeny.
ISMB/ECCB (Supplement of Bioinformatics) 2007: 433-439 |
| 61 | | Chunfang Zheng,
Qian Zhu,
David Sankoff:
Parts of the Problem of Polyploids in Rearrangement Phylogeny.
RECOMB-CG 2007: 162-176 |
| 60 | | Vicky Choi,
Chunfang Zheng,
Qian Zhu,
David Sankoff:
Algorithms for the Extraction of Synteny Blocks from Comparative Maps.
WABI 2007: 277-288 |
| 59 | | Chunfang Zheng,
Qian Zhu,
David Sankoff:
Removing Noise and Ambiguities from Comparative Maps in Rearrangement Analysis.
IEEE/ACM Trans. Comput. Biology Bioinform. 4(4): 515-522 (2007) |
| 58 | | Wei Xu,
Chunfang Zheng,
David Sankoff:
Paths and Cycles in Breakpoint Graph of Random Multichromosomal Genomes.
Journal of Computational Biology 14(4): 423-435 (2007) |
| 57 | | Zaky Adam,
Monique Turmel,
Claude Lemieux,
David Sankoff:
Common Intervals and Symmetric Difference in a Model-Free Phylogenomics, with an Application to Streptophyte Evolution.
Journal of Computational Biology 14(4): 436-445 (2007) |
| 2006 |
|---|
| 56 | | Andrew Wei Xu,
Chunfang Zheng,
David Sankoff:
Paths and Cycles in Breakpoint Graphs of Random Multichromosomal Genomes.
Comparative Genomics 2006: 51-62 |
| 55 | | Zaky Adam,
Monique Turmel,
Claude Lemieux,
David Sankoff:
Common Intervals and Symmetric Difference in a Model-Free Phylogenomics, with an Application to Streptophyte Evolution.
Comparative Genomics 2006: 63-74 |
| 54 | | Chunfang Zheng,
David Sankoff:
Rearrangement of Noisy Genomes.
International Conference on Computational Science (2) 2006: 791-798 |
| 53 | | David Sankoff:
Statistical Evaluation of Genome Rearrangement.
RECOMB 2006: 84-84 |
| 52 | | Chunfang Zheng,
David Sankoff:
Genome rearrangements with partially ordered chromosomes.
J. Comb. Optim. 11(2): 133-144 (2006) |
| 51 | | Matthew Mazowita,
Lani Haque,
David Sankoff:
Stability of Rearrangement Measures in the Comparison of Genome Sequences.
Journal of Computational Biology 13(2): 554-566 (2006) |
| 50 | | David Sankoff,
Lani Haque:
The Distribution of Genomic Distance between Random Genomes.
Journal of Computational Biology 13(5): 1005-1012 (2006) |
| 2005 |
|---|
| 49 | | Chunfang Zheng,
David Sankoff:
Genome Rearrangements with Partially Ordered Chromosomes.
COCOON 2005: 52-62 |
| 48 | | David Sankoff,
Lani Haque:
Power Boosts for Cluster Tests.
Comparative Genomics 2005: 121-130 |
| 47 | | David Sankoff,
Chunfang Zheng,
Aleksander Lenert:
Reversals of Fortune.
Comparative Genomics 2005: 131-141 |
| 46 | | Chunfang Zheng,
Aleksander Lenert,
David Sankoff:
Reversal distance for partially ordered genomes.
ISMB (Supplement of Bioinformatics) 2005: 502-508 |
| 45 | | David Sankoff,
Matthew Mazowita:
Stability of Rearrangement Measures in the Comparison of Genome Sequences.
RECOMB 2005: 603-614 |
| 44 | | David Sankoff,
Phil Trinh:
Chromosomal Breakpoint Reuse in Genome Sequence Rearrangement.
Journal of Computational Biology 12(6): 812-821 (2005) |
| 43 | | Rose Hoberman,
David Sankoff,
Dannie Durand:
The Statistical Analysis of Spatially Clustered Genes under the Maximum Gap Criterion.
Journal of Computational Biology 12(8): 1083-1102 (2005) |
| 2004 |
|---|
| 42 | | David Sankoff,
Matthew Mazowita:
Estimators of Translocations and Inversions in Comparative Maps.
Comparative Genomics 2004: 109-122 |
| 41 | | Rose Hoberman,
David Sankoff,
Dannie Durand:
The Statistical Significance of Max-Gap Clusters.
Comparative Genomics 2004: 55-71 |
| 40 | | David Sankoff,
Jean-François Lefebvre,
Elisabeth R. M. Tillier,
Adrian Maler,
Nadia El-Mabrouk:
The Distribution of Inversion Lengths in Bacteria.
Comparative Genomics 2004: 97-108 |
| 39 | | Phil Trinh,
Aoife McLysaght,
David Sankoff:
Genomic features in the breakpoint regions between syntenic blocks.
ISMB/ECCB (Supplement of Bioinformatics) 2004: 318-325 |
| 38 | | David Sankoff,
Phil Trinh:
Chromosomal breakpoint re-use in the inference of genome sequence rearrangement.
RECOMB 2004: 30-35 |
| 37 | | Guillaume Bourque,
David Sankoff:
Improving Gene Network Inference by Comparing Expression Time-series across Species, Developmental Stages or Tissues.
J. Bioinformatics and Computational Biology 2(4): 765-784 (2004) |
| 36 | | Raffaele Giancarlo,
David Sankoff:
Editorial: Combinatiorial Pattern Matching.
J. Discrete Algorithms 2(2): 135-136 (2004) |
| 2003 |
|---|
| 35 | | Jean-François Lefebvre,
Nadia El-Mabrouk,
Elisabeth R. M. Tillier,
David Sankoff:
Detection and validation of single gene inversions.
ISMB (Supplement of Bioinformatics) 2003: 190-196 |
| 34 | | Dannie Durand,
David Sankoff:
Tests for Gene Clustering.
Journal of Computational Biology 10(3/4): 453-482 (2003) |
| 33 | | Nadia El-Mabrouk,
David Sankoff:
The Reconstruction of Doubled Genomes.
SIAM J. Comput. 32(3): 754-792 (2003) |
| 2002 |
|---|
| 32 | | Dannie Durand,
David Sankoff:
Tests for gene clustering.
RECOMB 2002: 144-154 |
| 31 | | David Sankoff:
Short inversions and conserved gene clusters.
SAC 2002: 164-167 |
| 30 | | David Sankoff:
Short inversions and conserved gene cluster.
Bioinformatics 18(10): 1305 (2002) |
| 2000 |
|---|
| 29 | | Raffaele Giancarlo,
David Sankoff:
Combinatorial Pattern Matching, 11th Annual Symposium, CPM 2000, Montreal, Canada, June 21-23, 2000, Proceedings
Springer 2000 |
| 28 | | David Sankoff,
David Bryant,
Mélanie Deneault,
B. Franz Lang,
Gertraud Burger:
Early eukaryote evolution based on mitochondrial gene order breakpoints.
RECOMB 2000: 254-262 |
| 27 | | David Sankoff:
The early introduction of dynamic programming into computational biology.
Bioinformatics 16(1): 41-47 (2000) |
| 26 | | David Sankoff,
David Bryant,
Mélanie Deneault,
B. Franz Lang,
Gertraud Burger:
Early Eukaryote Evolution Based on Mitochondrial Gene Order Breakpoints.
Journal of Computational Biology 7(3-4): 521-535 (2000) |
| 1999 |
|---|
| 25 | | Nadia El-Mabrouk,
David Sankoff:
Hybridization and Genome Rearrangement.
CPM 1999: 78-87 |
| 24 | | Nadia El-Mabrouk,
David Bryant,
David Sankoff:
Reconstructing the pre-doubling genome.
RECOMB 1999: 154-163 |
| 23 | | David Sankoff,
Mathieu Blanchette:
Probability models for genome rearrangement and linear invariants for phylogenetic inference.
RECOMB 1999: 302-309 |
| 22 | | Won-Sook Lee,
Pierre Beylot,
David Sankoff,
Nadia Magnenat-Thalmann:
Generating 3D Virtual Populations from Pictures of a Few Individuals.
WADS 1999: 134-144 |
| 21 | | David Sankoff:
Genome rearrangement with gene families.
Bioinformatics 15(11): 909-917 (1999) |
| 20 | | David Bryant,
David Sankoff:
Phylogenetic Reconstruction from Genome Order Data.
Electronic Notes in Discrete Mathematics 2: 158 (1999) |
| 19 | | David Sankoff,
Mathieu Blanchette:
Phylogenetic Invariants for Genome Rearrangements.
Journal of Computational Biology 6(3/4): (1999) |
| 1998 |
|---|
| 18 | | Janice I. Glasgow,
Timothy G. Littlejohn,
François Major,
Richard H. Lathrop,
David Sankoff,
Christoph Sensen:
Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28 - July 1, 1998
AAAI 1998 |
| 17 | | David Sankoff:
The Production of Code-Mixed Discourse.
COLING-ACL 1998: 8-21 |
| 16 | | Nadia El-Mabrouk,
Joseph H. Nadeau,
David Sankoff:
Genome Halving.
CPM 1998: 235-250 |
| 15 | | David Sankoff,
Mathieu Blanchette:
Multiple genome rearrangements.
RECOMB 1998: 243-247 |
| 14 | | David Sankoff,
Mathieu Blanchette:
Multiple Genome Rearrangement and Breakpoint Phylogeny.
Journal of Computational Biology 5(3): 555-570 (1998) |
| 1997 |
|---|
| 13 | | David Sankoff,
Mathieu Blanchette:
The Median Problem for Breakpoints in Comparative Genomics.
COCOON 1997: 251-264 |
| 12 | | David Sankoff,
Marie-Noelle Parent,
Isabelle Marchand,
Vincent Ferretti:
On the Nadeau-Taylor Theory of Conserved Chromosome Segments.
CPM 1997: 262-274 |
| 11 | | David Sankoff,
Vincent Ferretti,
Joseph H. Nadeau:
Conserved segment identification.
RECOMB 1997: 252-256 |
| 10 | | David Sankoff,
Vincent Ferretti,
Joseph H. Nadeau:
Conserved Segment Identification.
Journal of Computational Biology 4(4): 559- (1997) |
| 1996 |
|---|
| 9 | | Vincent Ferretti,
Joseph H. Nadeau,
David Sankoff:
Original Synteny.
CPM 1996: 159-167 |
| 8 | | David Sankoff,
Joseph H. Nadeau:
Conserved Synteny As a Measure of Genomic Distance.
Discrete Applied Mathematics 71(1-3): 247-257 (1996) |
| 7 | | David Sankoff,
Gopal Sundaram,
John D. Kececioglu:
Steiner Points in the Space of Genome Rearrangements.
Int. J. Found. Comput. Sci. 7(1): 1-9 (1996) |
| 1995 |
|---|
| 6 | | John D. Kececioglu,
David Sankoff:
Exact and Approximation Algorithms for Sorting by Reversals, with Application to Genome Rearrangement.
Algorithmica 13(1/2): 180-210 (1995) |
| 1994 |
|---|
| 5 | | John D. Kececioglu,
David Sankoff:
Efficient Bounds for Oriented Chromosome Inversion Distance.
CPM 1994: 307-325 |
| 1993 |
|---|
| 4 | | John D. Kececioglu,
David Sankoff:
Exact and Approximation Algorithms for the Inversion Distance Between Two Chromosomes.
CPM 1993: 87-105 |
| 1992 |
|---|
| 3 | | David Sankoff:
Edit Distances for Genome Comparisons Based on Non-Local Operations.
CPM 1992: 121-135 |
| 1982 |
|---|
| 2 | | David Sankoff,
R. J. Cedergren,
W. McKay:
A strategy for sequence phylogeny research.
Nucleic Acids Research 10(1): 421-431 (1982) |
| 1971 |
|---|
| 1 | | David Sankoff:
Dictionary Structure and Probability Measures
Information and Control 19(2): 104-113 (1971) |
