David Sankoff

2008
61	EE	Qian Zhu, Zaky Adam, Vicky Choi, David Sankoff: Generalized Gene Adjacencies, Graph Bandwidth and Clusters in Yeast Evolution. ISBRA 2008: 134-145
60	EE	Mariana Kant, Maurice LeBon, David Sankoff: Hierarchical Clustering Using Constraints. ISBRA 2008: 2-13
59	EE	Chunfang Zheng, Qian Zhu, Zaky Adam, David Sankoff: Guided genome halving: hardness, heuristics and the history of the Hemiascomycetes. ISMB 2008: 96-104
2007
58		David Sankoff, Lusheng Wang, Francis Chin: Proceedings of 5th Asia-Pacific Bioinformatics Conference, APBC 2007, 15-17 January 2007, Hong Kong, China Imperial College Press 2007
57	EE	David Sankoff, Lusheng Wang, Francis Chin: Preface. APBC 2007
56	EE	David Sankoff, Chunfang Zheng, Qian Zhu: Polyploids, genome halving and phylogeny. ISMB/ECCB (Supplement of Bioinformatics) 2007: 433-439
55	EE	Chunfang Zheng, Qian Zhu, David Sankoff: Parts of the Problem of Polyploids in Rearrangement Phylogeny. RECOMB-CG 2007: 162-176
54	EE	Vicky Choi, Chunfang Zheng, Qian Zhu, David Sankoff: Algorithms for the Extraction of Synteny Blocks from Comparative Maps. WABI 2007: 277-288
53	EE	Chunfang Zheng, Qian Zhu, David Sankoff: Removing Noise and Ambiguities from Comparative Maps in Rearrangement Analysis. IEEE/ACM Trans. Comput. Biology Bioinform. 4(4): 515-522 (2007)
2006
52	EE	Wei Xu, Chunfang Zheng, David Sankoff: Paths and Cycles in Breakpoint Graphs of Random Multichromosomal Genomes. Comparative Genomics 2006: 51-62
51	EE	Zaky Adam, Monique Turmel, Claude Lemieux, David Sankoff: Common Intervals and Symmetric Difference in a Model-Free Phylogenomics, with an Application to Streptophyte Evolution. Comparative Genomics 2006: 63-74
50	EE	Chunfang Zheng, David Sankoff: Rearrangement of Noisy Genomes. International Conference on Computational Science (2) 2006: 791-798
49	EE	David Sankoff: Statistical Evaluation of Genome Rearrangement. RECOMB 2006: 84-84
48	EE	Chunfang Zheng, David Sankoff: Genome rearrangements with partially ordered chromosomes. J. Comb. Optim. 11(2): 133-144 (2006)
2005
47	EE	Chunfang Zheng, David Sankoff: Genome Rearrangements with Partially Ordered Chromosomes. COCOON 2005: 52-62
46	EE	David Sankoff, Lani Haque: Power Boosts for Cluster Tests. Comparative Genomics 2005: 121-130
45	EE	David Sankoff, Chunfang Zheng, Aleksander Lenert: Reversals of Fortune. Comparative Genomics 2005: 131-141
44	EE	Chunfang Zheng, Aleksander Lenert, David Sankoff: Reversal distance for partially ordered genomes. ISMB (Supplement of Bioinformatics) 2005: 502-508
43	EE	David Sankoff, Matthew Mazowita: Stability of Rearrangement Measures in the Comparison of Genome Sequences. RECOMB 2005: 603-614
42	EE	David Sankoff, Phil Trinh: Chromosomal Breakpoint Reuse in Genome Sequence Rearrangement. Journal of Computational Biology 12(6): 812-821 (2005)
2004
41	EE	David Sankoff, Matthew Mazowita: Estimators of Translocations and Inversions in Comparative Maps. Comparative Genomics 2004: 109-122
40	EE	Rose Hoberman, David Sankoff, Dannie Durand: The Statistical Significance of Max-Gap Clusters. Comparative Genomics 2004: 55-71
39	EE	David Sankoff, Jean-François Lefebvre, Elisabeth R. M. Tillier, Adrian Maler, Nadia El-Mabrouk: The Distribution of Inversion Lengths in Bacteria. Comparative Genomics 2004: 97-108
38	EE	Phil Trinh, Aoife McLysaght, David Sankoff: Genomic features in the breakpoint regions between syntenic blocks. ISMB/ECCB (Supplement of Bioinformatics) 2004: 318-325
37	EE	David Sankoff, Phil Trinh: Chromosomal breakpoint re-use in the inference of genome sequence rearrangement. RECOMB 2004: 30-35
36	EE	Guillaume Bourque, David Sankoff: Improving Gene Network Inference by Comparing Expression Time-series across Species, Developmental Stages or Tissues. J. Bioinformatics and Computational Biology 2(4): 765-784 (2004)
35	EE	Raffaele Giancarlo, David Sankoff: Editorial: Combinatiorial Pattern Matching. J. Discrete Algorithms 2(2): 135-136 (2004)
2003
34	EE	Jean-François Lefebvre, Nadia El-Mabrouk, Elisabeth R. M. Tillier, David Sankoff: Detection and validation of single gene inversions. ISMB (Supplement of Bioinformatics) 2003: 190-196
33	EE	Dannie Durand, David Sankoff: Tests for Gene Clustering. Journal of Computational Biology 10(3/4): 453-482 (2003)
32	EE	Nadia El-Mabrouk, David Sankoff: The Reconstruction of Doubled Genomes. SIAM J. Comput. 32(3): 754-792 (2003)
2002
31	EE	Dannie Durand, David Sankoff: Tests for gene clustering. RECOMB 2002: 144-154
30	EE	David Sankoff: Short inversions and conserved gene clusters. SAC 2002: 164-167
29		David Sankoff: Short inversions and conserved gene cluster. Bioinformatics 18(10): 1305 (2002)
2000
28		Raffaele Giancarlo, David Sankoff: Combinatorial Pattern Matching, 11th Annual Symposium, CPM 2000, Montreal, Canada, June 21-23, 2000, Proceedings Springer 2000
27	EE	David Sankoff, David Bryant, Mélanie Deneault, B. Franz Lang, Gertraud Burger: Early eukaryote evolution based on mitochondrial gene order breakpoints. RECOMB 2000: 254-262
26		David Sankoff: The early introduction of dynamic programming into computational biology. Bioinformatics 16(1): 41-47 (2000)
25		David Sankoff, David Bryant, Mélanie Deneault, B. Franz Lang, Gertraud Burger: Early Eukaryote Evolution Based on Mitochondrial Gene Order Breakpoints. Journal of Computational Biology 7(3-4): 521-535 (2000)
1999
24	EE	Nadia El-Mabrouk, David Sankoff: Hybridization and Genome Rearrangement. CPM 1999: 78-87
23	EE	Nadia El-Mabrouk, David Bryant, David Sankoff: Reconstructing the pre-doubling genome. RECOMB 1999: 154-163
22	EE	David Sankoff, Mathieu Blanchette: Probability models for genome rearrangement and linear invariants for phylogenetic inference. RECOMB 1999: 302-309
21	EE	Won-Sook Lee, Pierre Beylot, David Sankoff, Nadia Magnenat-Thalmann: Generating 3D Virtual Populations from Pictures of a Few Individuals. WADS 1999: 134-144
20		David Sankoff: Genome rearrangement with gene families. Bioinformatics 15(11): 909-917 (1999)
19		David Sankoff, Mathieu Blanchette: Phylogenetic Invariants for Genome Rearrangements. Journal of Computational Biology 6(3/4): (1999)
1998
18		Janice I. Glasgow, Timothy G. Littlejohn, François Major, Richard H. Lathrop, David Sankoff, Christoph Sensen: Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28 - July 1, 1998 AAAI 1998
17		David Sankoff: The Production of Code-Mixed Discourse. COLING-ACL 1998: 8-21
16		Nadia El-Mabrouk, Joseph H. Nadeau, David Sankoff: Genome Halving. CPM 1998: 235-250
15	EE	David Sankoff, Mathieu Blanchette: Multiple genome rearrangements. RECOMB 1998: 243-247
14		David Sankoff, Mathieu Blanchette: Multiple Genome Rearrangement and Breakpoint Phylogeny. Journal of Computational Biology 5(3): 555-570 (1998)
1997
13		David Sankoff, Mathieu Blanchette: The Median Problem for Breakpoints in Comparative Genomics. COCOON 1997: 251-264
12		David Sankoff, Marie-Noelle Parent, Isabelle Marchand, Vincent Ferretti: On the Nadeau-Taylor Theory of Conserved Chromosome Segments. CPM 1997: 262-274
11	EE	David Sankoff, Vincent Ferretti, Joseph H. Nadeau: Conserved segment identification. RECOMB 1997: 252-256
10		David Sankoff, Vincent Ferretti, Joseph H. Nadeau: Conserved Segment Identification. Journal of Computational Biology 4(4): 559- (1997)
1996
9		Vincent Ferretti, Joseph H. Nadeau, David Sankoff: Original Synteny. CPM 1996: 159-167
8	EE	David Sankoff, Joseph H. Nadeau: Conserved Synteny As a Measure of Genomic Distance. Discrete Applied Mathematics 71(1-3): 247-257 (1996)
7		David Sankoff, Gopal Sundaram, John D. Kececioglu: Steiner Points in the Space of Genome Rearrangements. Int. J. Found. Comput. Sci. 7(1): 1-9 (1996)
1995
6		John D. Kececioglu, David Sankoff: Exact and Approximation Algorithms for Sorting by Reversals, with Application to Genome Rearrangement. Algorithmica 13(1/2): 180-210 (1995)
1994
5		John D. Kececioglu, David Sankoff: Efficient Bounds for Oriented Chromosome Inversion Distance. CPM 1994: 307-325
1993
4		John D. Kececioglu, David Sankoff: Exact and Approximation Algorithms for the Inversion Distance Between Two Chromosomes. CPM 1993: 87-105
1992
3		David Sankoff: Edit Distances for Genome Comparisons Based on Non-Local Operations. CPM 1992: 121-135
1982
2		David Sankoff, R. J. Cedergren, W. McKay: A strategy for sequence phylogeny research. Nucleic Acids Research 10(1): 421-431 (1982)
1971
1		David Sankoff: Dictionary Structure and Probability Measures Information and Control 19(2): 104-113 (1971)

Coauthor Index

1	Zaky Adam	[51] [59] [61]
2	Pierre Beylot	[21]
3	Mathieu Blanchette	[13] [14] [15] [19] [22]
4	Guillaume Bourque	[36]
5	David Bryant	[23] [25] [27]
6	Gertraud Burger	[25] [27]
7	R. J. Cedergren	[2]
8	Francis Chin	[57] [58]
9	Vicky Choi	[54] [61]
10	Mélanie Deneault	[25] [27]
11	Dannie Durand	[31] [33] [40]
12	Nadia El-Mabrouk	[16] [23] [24] [32] [34] [39]
13	Vincent Ferretti	[9] [10] [11] [12]
14	Raffaele Giancarlo	[28] [35]
15	Janice I. Glasgow	[18]
16	Lani Haque	[46]
17	Rose Hoberman	[40]
18	Mariana Kant	[60]
19	John D. Kececioglu	[4] [5] [6] [7]
20	B. Franz Lang	[25] [27]
21	Richard H. Lathrop	[18]
22	Maurice LeBon	[60]
23	Won-Sook Lee	[21]
24	Jean-François Lefebvre	[34] [39]
25	Claude Lemieux	[51]
26	Aleksander Lenert	[44] [45]
27	Timothy G. Littlejohn	[18]
28	Nadia Magnenat-Thalmann	[21]
29	François Major	[18]
30	Adrian Maler	[39]
31	Isabelle Marchand	[12]
32	Matthew Mazowita	[41] [43]
33	W. McKay	[2]
34	Aoife McLysaght	[38]
35	Joseph H. Nadeau	[8] [9] [10] [11] [16]
36	Marie-Noelle Parent	[12]
37	Christoph Sensen	[18]
38	Gopal Sundaram	[7]
39	Elisabeth R. M. Tillier	[34] [39]
40	Phil Trinh	[37] [38] [42]
41	Monique Turmel	[51]
42	Lusheng Wang	[57] [58]
43	Wei Xu	[52]
44	Chunfang Zheng	[44] [45] [47] [48] [50] [52] [53] [54] [55] [56] [59]
45	Qian Zhu	[53] [54] [55] [56] [59] [61]

Colors in the list of coauthors