| 2009 | ||
|---|---|---|
| 36 | Ivan G. Costa, Alexander Schönhuth, Christoph Hafemeister, Alexander Schliep: Constrained mixture estimation for analysis and robust classification of clinical time series. Bioinformatics 25(12): (2009) | |
| 2008 | ||
| 35 | Marcílio Carlos Pereira de Souto, Daniel S. A. de Araujo, Ivan G. Costa, Rodrigo G. F. Soares, Teresa Bernarda Ludermir, Alexander Schliep: Comparative study on normalization procedures for cluster analysis of gene expression datasets. IJCNN 2008: 2792-2798 | |
| 34 | Marcílio Carlos Pereira de Souto, Ricardo Bastos Cavalcante Prudêncio, Rodrigo G. F. Soares, Daniel S. A. de Araujo, Ivan G. Costa, Teresa Bernarda Ludermir, Alexander Schliep: Ranking and selecting clustering algorithms using a meta-learning approach. IJCNN 2008: 3729-3735 | |
| 33 | Ivan G. Costa, Stefan Roepcke, Christoph Hafemeister, Alexander Schliep: Inferring differentiation pathways from gene expression. ISMB 2008: 156-164 | |
| 32 | Marcílio Carlos Pereira de Souto, Ivan G. Costa, Daniel S. A. de Araujo, Teresa Bernarda Ludermir, Alexander Schliep: Clustering cancer gene expression data: a comparative study. BMC Bioinformatics 9: (2008) | |
| 31 | Alexander Schliep, Roland Krause: Efficient Algorithms for the Computational Design of Optimal Tiling Arrays. IEEE/ACM Trans. Comput. Biology Bioinform. 5(4): 557-567 (2008) | |
| 30 | Anthony J. Macula, Alexander Schliep, Morgan A. Bishop, Thomas E. Renz: New, Improved, and Practical k-Stem Sequence Similarity Measures for Probe Design. Journal of Computational Biology 15(5): 525-534 (2008) | |
| 2007 | ||
| 29 | Claudia Falter, Alexander Schliep, Joachim Selbig, Martin Vingron, Dirk Walther: Proceedings of the German Conference on Bioinformatics, GCB 2007, September 26-28, 2007, Potsdam, Germany. GI 2007 | |
| 28 | Ivan G. Costa, Marcílio Carlos Pereira de Souto, Alexander Schliep: Validating Gene Clusterings by Selecting Informative Gene Ontology Terms with Mutual Information. BSB 2007: 81-92 | |
| 27 | Benjamin Georgi, M. Anne Spence, Pamela Flodman, Alexander Schliep: Mixture Model Based Group Inference in Fused Genotype and Phenotype Data. GfKl 2007: 119-126 | |
| 26 | Alexander Schliep: Detecting functional modules from heterogenous mass data. LWA 2007: 9 | |
| 25 | Benjamin Georgi, Jörg Schultz, Alexander Schliep: Context-Specific Independence Mixture Modelling for Protein Families. PKDD 2007: 79-90 | |
| 24 | Alexander Schliep, Roland Krause: Efficient Computational Design of Tiling Arrays Using a Shortest Path Approach. WABI 2007: 383-394 | |
| 23 | Wasinee Rungsarityotin, Roland Krause, Arno Schödl, Alexander Schliep: Identifying protein complexes directly from high-throughput TAP data with Markov random fields. BMC Bioinformatics 8: (2007) | |
| 22 | Ivan G. Costa, Roland Krause, Lennart Opitz, Alexander Schliep: Semi-supervised learning for the identification of syn-expressed genes from fused microarray and in situ image data. BMC Bioinformatics 8(S-10): (2007) | |
| 21 | Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert: Integer linear programming approaches for non-unique probe selection. Discrete Applied Mathematics 155(6-7): 840-856 (2007) | |
| 2006 | ||
| 20 | Lennart Opitz, Alexander Schliep, Stefan Posch: Joint Analysis of In-situ Hybridization and Gene Expression Data. GfKl 2006: 577-584 | |
| 19 | Benjamin Georgi, Alexander Schliep: Context-specific independence mixture modeling for positional weight matrices. ISMB (Supplement of Bioinformatics) 2006: 166-173 | |
| 18 | Alexander Schliep, Sven Rahmann: Decoding non-unique oligonucleotide hybridization experiments of targets related by a phylogenetic tree. ISMB (Supplement of Bioinformatics) 2006: 424-430 | |
| 2005 | ||
| 17 | Marcus Weber, Wasinee Rungsarityotin, Alexander Schliep: An Indicator for the Number of Clusters: Using a Linear Map to Simplex Structure. GfKl 2005: 103-110 | |
| 16 | Ivan G. Costa, Alexander Schliep: On External Indices for Mixtures: Validating Mixtures of Genes. GfKl 2005: 662-669 | |
| 15 | Ivan G. Costa, Alexander Schönhuth, Alexander Schliep: The Graphical Query Language: a tool for analysis of gene expression time-courses. Bioinformatics 21(10): 2544-2545 (2005) | |
| 14 | Alexander Schliep, Ivan G. Costa, Christine Steinhoff, Alexander Schönhuth: Analyzing Gene Expression Time-Courses. IEEE/ACM Trans. Comput. Biology Bioinform. 2(3): 179-193 (2005) | |
| 2004 | ||
| 13 | Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert: Optimal robust non-unique probe selection using Integer Linear Programming. ISMB/ECCB (Supplement of Bioinformatics) 2004: 186-193 | |
| 12 | Alexander Schliep, Christine Steinhoff, Alexander Schönhuth: Robust inference of groups in gene expression time-courses using mixtures of HMMs. ISMB/ECCB (Supplement of Bioinformatics) 2004: 283-289 | |
| 2003 | ||
| 11 | Alexander Schliep, David C. Torney, Sven Rahmann: Group Testing With DNA Chips: Generating Designs and Decoding Experiments. CSB 2003: 84-93 | |
| 10 | Alexander Schliep, Alexander Schönhuth, Christine Steinhoff: Using hidden Markov models to analyze gene expression time course data. ISMB (Supplement of Bioinformatics) 2003: 255-263 | |
| 2002 | ||
| 9 | P. Pipenbacher, Alexander Schliep, Sebastian Schneckener, Alexander Schönhuth, Dietmar Schomburg, Rainer Schrader: ProClust: improved clustering of protein sequences with an extended graph-based approach. ECCB 2002: 182-191 | |
| 8 | Lars Kaderali, Alexander Schliep: Selecting signature oligonucleotides to identify organisms using DNA arrays. Bioinformatics 18(10): 1340-1349 (2002) | |
| 2001 | ||
| 7 | Eva Bolten, Alexander Schliep, Sebastian Schneckener, Dietmar Schomburg, Rainer Schrader: Clustering protein sequences-structure prediction by transitive homology. Bioinformatics 17(10): 935-941 (2001) | |
| 6 | Eva Bolten, Alexander Schliep, Sebastian Schneckener, Dietmar Schomburg, Rainer Schrader: Strongly Connected Components can Predict Protein Structure. Electronic Notes in Discrete Mathematics 8: 10-13 (2001) | |
| 5 | Lars Kaderali, Alexander Schliep: A new Algorithm for Accelerating Pair-Wise Computations of Melting Temperature. Electronic Notes in Discrete Mathematics 8: 46-49 (2001) | |
| 1999 | ||
| 4 | Eva Bolten, Alexander Schliep, Sebastian Schneckener, Dietmar Schomburg, Rainer Schrader: Clustering Protein Sequences ? Structure Prediction by Transitive Homology. German Conference on Bioinformatics 1999: 181 | |
| 3 | Alexander Schliep: Learning Hidden Markov Model Topology. German Conference on Bioinformatics 1999: 225-226 | |
| 1998 | ||
| 2 | Norman A. Doggett, Jonathan Longmire, Alexander Schliep, David C. Torney: Screening large clone libraries efficiently. German Conference on Bioinformatics 1998 | |
| 1996 | ||
| 1 | Emanuel Knill, Alexander Schliep, David C. Torney: Interpretation of Pooling Experiments Using the Markov Chain Monte Carlo Method. Journal of Computational Biology 3(3): 395-406 (1996) | |