Bertil Schmidt

	2009
74		Yupeng Chen, Bertil Schmidt, Douglas L. Maskell: A Reconfigurable Bloom Filter Architecture for BLASTN. ARCS 2009: 40-49
73		Yongchao Liu, Bertil Schmidt, Douglas L. Maskell: MSA-CUDA: Multiple Sequence Alignment on Graphics Processing Units with CUDA. ASAP 2009: 121-128
72		Bertil Schmidt, Douglas L. Maskell: Workshop on Using Emerging Parallel Architectures for Computational Science. ICCS (1) 2009: 861-863
71		Adrianto Wirawan, Bertil Schmidt, Chee Keong Kwoh: Pairwise Distance Matrix Computation for Multiple Sequence Alignment on the Cell Broadband Engine. ICCS (1) 2009: 954-963
70		Haixiang Shi, Bertil Schmidt, Weiguo Liu, Wolfgang Müller-Wittig: Accelerating error correction in high-throughput short-read DNA sequencing data with CUDA. IPDPS 2009: 1-8
69		Yongchao Liu, Bertil Schmidt, Douglas L. Maskell: Parallel reconstruction of neighbor-joining trees for large multiple sequence alignments using CUDA. IPDPS 2009: 1-8
68		Jan Schröder, Heiko Schröder, Simon J. Puglisi, Ranjan Sinha, Bertil Schmidt: SHREC: a short-read error correction method. Bioinformatics 25(17): 2157-2163 (2009)
67		Bertil Schmidt, Ranjan Sinha, Bryan Beresford-Smith, Simon J. Puglisi: A fast hybrid short read fragment assembly algorithm. Bioinformatics 25(17): 2279-2280 (2009)
66		Adrianto Wirawan, Bertil Schmidt, Huiliang Zhang, Chee Keong Kwoh: High performance protein sequence database scanning on the Cell Broadband Engine. Scientific Programming 17(1-2): 97-111 (2009)
	2008
65		Chen Chen, Bertil Schmidt, Weiguo Liu, Wolfgang Müller-Wittig: GPU-MEME: Using Graphics Hardware to Accelerate Motif Finding in DNA Sequences. PRIB 2008: 448-459
64		Huiliang Zhang, Bertil Schmidt, Wolfgang Müller-Wittig: Accelerating BLASTP on the Cell Broadband Engine. PRIB 2008: 460-470
63		Adrianto Wirawan, Chee Keong Kwoh, Nim Tri Hieu, Bertil Schmidt: CBESW: Sequence Alignment on the Playstation 3. BMC Bioinformatics 9: (2008)
62		Dadabhai T. Singh, Rahul Trehan, Bertil Schmidt, Timo Bretschneider: Comparative phyloinformatics of virus genes at micro and macro levels in a distributed computing environment. BMC Bioinformatics 9(S-1): (2008)
61		Weiguo Liu, Bertil Schmidt, Gerrit Voss, Wolfgang Müller-Wittig: Accelerating molecular dynamics simulations using Graphics Processing Units with CUDA. Computer Physics Communications 179(9): 634-641 (2008)
60		A. Singh, Chen Chen, Weiguo Liu, W. Mitchell, Bertil Schmidt: A Hybrid Computational Grid Architecture for Comparative Genomics. IEEE Transactions on Information Technology in Biomedicine 12(2): 218-225 (2008)
59		Timothy F. Oliver, Leow Yuan Yeow, Bertil Schmidt: Integrating FPGA acceleration into HMMer. Parallel Computing 34(11): 681-691 (2008)
	2007
58		Jagath C. Rajapakse, Bertil Schmidt, L. Gwenn Volkert: Pattern Recognition in Bioinformatics, Second IAPR International Workshop, PRIB 2007, Singapore, October 1-2, 2007, Proceedings Springer 2007
57		Malcolm Yoke-Hean Low, Weiguo Liu, Bertil Schmidt: A Parallel BSP Algorithm for Irregular Dynamic Programming. APPT 2007: 151-160
56		Weiguo Liu, Bertil Schmidt, Gerrit Voss, Wolfgang Müller-Wittig: Molecular Dynamics Simulations on Commodity GPUs with CUDA. HiPC 2007: 185-196
55		Weiguo Liu, Wolfgang Müller-Wittig, Bertil Schmidt: Performance Predictions for General-Purpose Computation on GPUs. ICPP 2007: 50
54		Timothy F. Oliver, Leow Yuan Yeow, Bertil Schmidt: High Performance Database Searching with HMMer on FPGAs. IPDPS 2007: 1-7
53		Adrianto Wirawan, Chee Keong Kwoh, Bertil Schmidt: Parallel DNA Sequence Alignment on the Cell Broadband Engine. PPAM 2007: 1249-1256
52		Yan Lin Aung, Douglas L. Maskell, Timothy F. Oliver, Bertil Schmidt, William Bong: C-Based Design Methodology for FPGA Implementation of ClustalW MSA. PRIB 2007: 11-18
51		Jimin Feng, Samarjit Chakraborty, Bertil Schmidt, Weiguo Liu, Unmesh D. Bordoloi: Fast Schedulability Analysis Using Commodity Graphics Hardware. RTCSA 2007: 400-408
50		Menaka Rajapakse, Bertil Schmidt, Lin Feng, Vladimir Brusic: Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms. BMC Bioinformatics 8: (2007)
49		Weiguo Liu, Bertil Schmidt, Gerrit Voss, Wolfgang Müller-Wittig: Streaming Algorithms for Biological Sequence Alignment on GPUs. IEEE Trans. Parallel Distrib. Syst. 18(9): 1270-1281 (2007)
48		Bertil Schmidt: A survey of desktop grid applications for e-science. IJWGS 3(3): 354-368 (2007)
47		Feng Lin, Heiko Schröder, Bertil Schmidt: Solving the Bottleneck Problem in Bioinformatics Computing: An Architectural Perspective. VLSI Signal Processing 48(3): 185-188 (2007)
46		Weiguo Liu, Bertil Schmidt, Wolfgang Müller-Wittig: Performance Analysis of General-Purpose Computation on Commodity Graphics Hardware: A Case Study Using Bioinformatics. VLSI Signal Processing 48(3): 209-221 (2007)
45		John Paul Walters, Xiandong Meng, Vipin Chaudhary, Timothy F. Oliver, Leow Yuan Yeow, Bertil Schmidt, Darran Nathan, Joseph I. Landman: MPI-HMMER-Boost: Distributed FPGA Acceleration. VLSI Signal Processing 48(3): 223-238 (2007)
	2006
44		Menaka Rajapakse, Bertil Schmidt, Vladimir Brusic: Multi-Objective Evolutionary Algorithm for Discovering Peptide Binding Motifs. EvoWorkshops 2006: 149-158
43		Weiguo Liu, Bertil Schmidt, Gerrit Voss, Wolfgang Müller-Wittig: GPU-ClustalW: Using Graphics Hardware to Accelerate Multiple Sequence Alignment. HiPC 2006: 363-374
42		Weiguo Liu, Bertil Schmidt, Gerrit Voss, Adrian Schröder, Wolfgang Müller-Wittig: Bio-sequence database scanning on a GPU. IPDPS 2006
41		Timothy F. Oliver, Bertil Schmidt, Yanto Jakop, Douglas L. Maskell: Accelerating the Viterbi Algorithm for Profile Hidden Markov Models Using Reconfigurable Hardware. International Conference on Computational Science (1) 2006: 522-529
40		Weiguo Liu, Bertil Schmidt: Parallel Pattern-Based Systems for Computational Biology: A Case Study. IEEE Trans. Parallel Distrib. Syst. 17(8): 750-763 (2006)
39		Weiguo Liu, Bertil Schmidt: Mapping of Hierarchical Parallel Genetic Algorithms for Protein Folding onto Computational Grids. IEICE Transactions 89-D(2): 589-596 (2006)
38		Timothy F. Oliver, Bertil Schmidt, Douglas L. Maskell, Darran Nathan, Ralf Clemens: High-speed Multiple Sequence Alignment on a reconfigurable platform. IJBRA 2(4): 394-406 (2006)
37		Chunxi Chen, Bertil Schmidt: Constructing large suffix trees on a computational grid. J. Parallel Distrib. Comput. 66(12): 1512-1523 (2006)
	2005
36		Jacop Yanto, Timothy F. Oliver, Bertil Schmidt, Douglas L. Maskell: Biological Sequence Analysis with Hidden Markov Models on an FPGA. Asia-Pacific Computer Systems Architecture Conference 2005: 429-439
35		Chunxi Chen, Bertil Schmidt: Parallel Construction of Large Suffix Trees on a PC Cluster. Euro-Par 2005: 1227-1236
34		Timothy F. Oliver, Bertil Schmidt, Douglas L. Maskell: Hyper customized processors for bio-sequence database scanning on FPGAs. FPGA 2005: 229-237
33		Timothy F. Oliver, Bertil Schmidt, Douglas L. Maskell, Darran Nathan, Ralf Clemens: Multiple Sequence Alignment on an FPGA. ICPADS (2) 2005: 326-330
32		Menaka Rajapakse, Lonce L. Wyse, Bertil Schmidt, Vladimir Brusic: Deriving Matrix of Peptide-MHC Interactions in Diabetic Mouse by Genetic Algorithm. IDEAL 2005: 440-447
31		Weiguo Liu, Bertil Schmidt: A Case Study on Pattern-Based Systems for High Performance Computational Biology. IPDPS 2005
30		Timothy F. Oliver, Bertil Schmidt, Douglas L. Maskell, Achutavarrier Prasad Vinod: A reconfigurable architecture for scanning biosequence databases. ISCAS (5) 2005: 4799-4802
29		Timothy F. Oliver, Bertil Schmidt, Darran Nathan, Ralf Clemens, Douglas L. Maskell: Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW. Bioinformatics 21(16): 3431-3432 (2005)
28		Tong Liu, Bertil Schmidt: Parallel RNA secondary structure prediction using stochastic context-free grammars. Concurrency and Computation: Practice and Experience 17(14): 1669-1685 (2005)
27		Chunxi Chen, Bertil Schmidt: An adaptive grid implementation of DNA sequence alignment. Future Generation Comp. Syst. 21(7): 988-1003 (2005)
	2004
26		Chunxi Chen, Bertil Schmidt: Performance analysis of computational biology applications on hierarchical Grid systems. CCGRID 2004: 426-433
25		Weiguo Liu, Bertil Schmidt: A Generic Parallel Pattern-Based System for Bioinformatics. Euro-Par 2004: 989-996
24		Chunxi Chen, Bertil Schmidt: Load Balancing for Hierarchical Grid Computing: A Case Study. HiPC 2004: 353-362
23		Weiguo Liu, Bertil Schmidt: A Tunable Coarse-Grained Parallel Algorithm for Irregular Dynamic Programming Applications. HiPC 2004: 91-100
22		Timothy F. Oliver, Bertil Schmidt: High Performance Biosequence Database Scanning on Reconfigurable Platforms. IPDPS 2004
21		Tong Liu, Bertil Schmidt: Parallel RNA Sequence-Structure Alignment. IPDPS 2004
20		Bertil Schmidt, Lin Feng, Amey V. Laud, Yusdi Santoso: Development of distributed bioinformatics applications with GMP. Concurrency - Practice and Experience 16(9): 945-959 (2004)
19		Manfred Schimmler, Bertil Schmidt, Hans-Werner Lang: A bit-serial floating-point unit for a massively parallel system on a chip. Parallel Algorithms Appl. 19(2-3): 79-95 (2004)
	2003
18		Chunxi Chen, Bertil Schmidt: Computing Large-Scale Alignments on a Multi-Cluster. CLUSTER 2003: 38-45
17		Weiguo Liu, Bertil Schmidt: Parallel Design Pattern for Computational Biology and Scientific Computing Applications. CLUSTER 2003: 456-459
16		Ishfaq Ahmad, Pieter Jonker, Bertil Schmidt, Andreas Uhl: Topic Introduction. Euro-Par 2003: 850
15		Bertil Schmidt, Lin Feng, Amey V. Laud, Yusdi Santoso: Parallel Detection of Regulatory Elements with gMP. IPDPS 2003: 156
14		Manfred Schimmler, Bertil Schmidt, Hans-Werner Lang: Design of a Bit-Serial Floating Point Unit for a Fine Grained Parallel Processor Array. PDPTA 2003: 255-261
13		Manfred Schimmler, Bertil Schmidt, Hans-Werner Lang, Sven Heithecker: An Area-Efficient Bit-Serial Integer Multiplier. VLSI 2003: 131-137
	2002
12		Bertil Schmidt, Heiko Schröder, Manfred Schimmler: Massively Parallel Solutions for Molecular Sequence Analysis. IPDPS 2002
11		Bertil Schmidt, Heiko Schröder, Manfred Schimmler: A hybrid architecture for bioinformatics. Future Generation Comp. Syst. 18(6): 855-862 (2002)
	2001
10		Bertil Schmidt, Heiko Schröder, Manfred Schimmler: Scanning Biosequence Databases on a Hybrid Parallel Architecture. Euro-Par 2001: 360-370
9		Bertil Schmidt, Heiko Schröder, Manfred Schimmler: Protein Sequence Comparison on the Instruction Systolic Array. PaCT 2001: 498-509
8		Bertil Schmidt, Heiko Schröder, Manfred Schimmler: Tomographic Image Reconstruction on the Instruction Systolic Array. Computers and Artificial Intelligence 20(1): (2001)
7		Bertil Schmidt, Heiko Schröder: A Hybrid Architecture for Multimedia Processors. Computers and Artificial Intelligence 20(3): (2001)
	2000
6		Bertil Schmidt: Design of a Parallel Accelerator for Volume Rendering. Euro-Par 2000: 1095-1104
	1999
5		Bertil Schmidt, Manfred Schimmler: A Parallel Accelerator Architecture for Multimedia Video Compression. Euro-Par 1999: 950-960
4		Bertil Schmidt, Manfred Schimmler, Heiko Schröder: A Morphological Approach to Hough Transform on an Instruction Systolic Array. Computers and Artificial Intelligence 18(6): (1999)
	1998
3		Bertil Schmidt, Manfred Schimmler, Heiko Schröder: Long Operand Arithmetic on Instruction Systolic Computer Architectures and Its Application in RSA Cryptography. Euro-Par 1998: 916-922
	1997
2		Bertil Schmidt, Manfred Schimmler, Heiko Schröder: Morphological Hough Transform on the Instruction Systolic Array. Euro-Par 1997: 798-806
	1995
1		Udo Mahlmeister, Bertil Schmidt, Gerald Sommer: Preattentive Colour Features by Steerable Filters. DAGM-Symposium 1995: 464-472

Coauthor Index

1	Ishfaq Ahmad	[16]
2	Yan Lin Aung	[52]
3	Bryan Beresford-Smith	[67]
4	William Bong	[52]
5	Unmesh D. Bordoloi	[51]
6	Timo Bretschneider	[62]
7	Vladimir Brusic	[32] [44] [50]
8	Samarjit Chakraborty	[51]
9	Vipin Chaudhary	[45]
10	Chen Chen	[60] [65]
11	Chunxi Chen	[18] [24] [26] [27] [35] [37]
12	Yupeng Chen	[74]
13	Ralf Clemens	[29] [33] [38]
14	Jimin Feng	[51]
15	Lin Feng	[15] [20] [50]
16	Sven Heithecker	[13]
17	Nim Tri Hieu	[63]
18	Yanto Jakop	[41]
19	Pieter P. Jonker (Pieter Jonker)	[16]
20	Chee Keong Kwoh	[53] [63] [66] [71]
21	Joseph I. Landman	[45]
22	Hans-Werner Lang	[13] [14] [19]
23	Amey V. Laud	[15] [20]
24	Feng Lin	[47]
25	Tong Liu	[21] [28]
26	Weiguo Liu	[17] [23] [25] [31] [39] [40] [42] [43] [46] [49] [51] [55] [56] [57] [60] [61] [65] [70]
27	Yongchao Liu	[69] [73]
28	Malcolm Yoke-Hean Low (Yoke-Hean Low)	[57]
29	Udo Mahlmeister	[1]
30	Douglas L. Maskell	[29] [30] [33] [34] [36] [38] [41] [52] [69] [72] [73] [74]
31	Xiandong Meng	[45]
32	W. Mitchell	[60]
33	Wolfgang Müller-Wittig	[42] [43] [46] [49] [55] [56] [61] [64] [65] [70]
34	Darran Nathan	[29] [33] [38] [45]
35	Timothy F. Oliver	[22] [29] [30] [33] [34] [36] [38] [41] [45] [52] [54] [59]
36	Simon J. Puglisi	[67] [68]
37	Jagath C. Rajapakse	[58]
38	Menaka Rajapakse	[32] [44] [50]
39	Yusdi Santoso	[15] [20]
40	Manfred Schimmler	[2] [3] [4] [5] [8] [9] [10] [11] [12] [13] [14] [19]
41	Adrian Schröder	[42]
42	Heiko Schröder	[2] [3] [4] [7] [8] [9] [10] [11] [12] [47] [68]
43	Jan Schröder	[68]
44	Haixiang Shi	[70]
45	A. Singh	[60]
46	Dadabhai T. Singh	[62]
47	Ranjan Sinha	[67] [68]
48	Gerald Sommer	[1]
49	Rahul Trehan	[62]
50	Andreas Uhl	[16]
51	Achutavarrier Prasad Vinod	[30]
52	L. Gwenn Volkert	[58]
53	Gerrit Voss	[42] [43] [49] [56] [61]
54	John Paul Walters	[45]
55	Adrianto Wirawan	[53] [63] [66] [71]
56	Lonce L. Wyse (Lonce Wyse)	[32]
57	Jacop Yanto	[36]
58	Leow Yuan Yeow	[45] [54] [59]
59	Huiliang Zhang	[64] [66]

Colors in the list of coauthors