Roded Sharan

	2009
69		Sharon Bruckner, Falk Hüffner, Richard M. Karp, Ron Shamir, Roded Sharan: Topology-Free Querying of Protein Interaction Networks. RECOMB 2009: 74-89
68		Sharon Bruckner, Falk Hüffner, Richard M. Karp, Ron Shamir, Roded Sharan: Torque: topology-free querying of protein interaction networks. Nucleic Acids Research 37(Web-Server-Issue): 106-108 (2009)
	2008
67		Nir Yosef, Roded Sharan, William Stafford Noble: Improved network-based identification of protein orthologs. ECCB 2008: 200-206
66		Oron Vanunu, Roded Sharan: A Propagation-based Algorithm for Inferring Gene-Disease Assocations. German Conference on Bioinformatics 2008: 54-52
65		Maxim Kalaev, Vineet Bafna, Roded Sharan: Fast and Accurate Alignment of Multiple Protein Networks. RECOMB 2008: 246-256
64		Alexander Medvedovsky, Vineet Bafna, Uri Zwick, Roded Sharan: An Algorithm for Orienting Graphs Based on Cause-Effect Pairs and Its Applications to Orienting Protein Networks. WABI 2008: 222-232
63		Maxim Kalaev, Mike Smoot, Trey Ideker, Roded Sharan: NetworkBLAST: comparative analysis of protein networks. Bioinformatics 24(4): 594-596 (2008)
62		Banu Dost, Tomer Shlomi, Nitin Gupta, Eytan Ruppin, Vineet Bafna, Roded Sharan: QNet: A Tool for Querying Protein Interaction Networks. Journal of Computational Biology 15(7): 913-925 (2008)
	2007
61		Oved Ourfali, Tomer Shlomi, Trey Ideker, Eytan Ruppin, Roded Sharan: SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments. ISMB/ECCB (Supplement of Bioinformatics) 2007: 359-366
60		Banu Dost, Tomer Shlomi, Nitin Gupta, Eytan Ruppin, Vineet Bafna, Roded Sharan: QNet: A Tool for Querying Protein Interaction Networks. RECOMB 2007: 1-15
59		Oleg Rokhlenko, Tomer Shlomi, Roded Sharan, Eytan Ruppin, Ron Y. Pinter: Constraint-based functional similarity of metabolic genes: going beyond network topology. Bioinformatics 23(16): 2139-2146 (2007)
58		Eitan Hirsh, Roded Sharan: Identification of conserved protein complexes based on a model of protein network evolution. Bioinformatics 23(2): 170-176 (2007)
57		Nir Yosef, Zohar Yakhini, Anya Tsalenko, Vessela Kristensen, Anne-Lise Børresen-Dale, Eytan Ruppin, Roded Sharan: A supervised approach for identifying discriminating genotype patterns and its application to breast cancer data. Bioinformatics 23(2): 91-98 (2007)
56		Itay Mayrose, Osnat Penn, Elana Erez, Nimrod D. Rubinstein, Tomer Shlomi, Natalia Tarnovitski Freund, Erez M. Bublil, Eytan Ruppin, Roded Sharan, Jonathan M. Gershoni, Eric Martz, Tal Pupko: Pepitope: epitope mapping from affinity-selected peptides. Bioinformatics 23(23): 3244-3246 (2007)
55		Jens Gramm, Till Nierhoff, Roded Sharan, Till Tantau: Haplotyping with missing data via perfect path phylogenies. Discrete Applied Mathematics 155(6-7): 788-805 (2007)
54		Eric P. Xing, Michael I. Jordan, Roded Sharan: Bayesian Haplotype Inference via the Dirichlet Process. Journal of Computational Biology 14(3): 267-284 (2007)
	2006
53		Shaojie Zhang, Ilya Borovok, Yair Aharonowitz, Roded Sharan, Vineet Bafna: A sequence-based filtering method for ncRNA identification and its application to searching for riboswitch elements. ISMB (Supplement of Bioinformatics) 2006: 557-565
52		Oleg Rokhlenko, Tomer Shlomi, Roded Sharan, Eytan Ruppin, Ron Y. Pinter: Flux-Based vs. Topology-Based Similarity of Metabolic Genes. WABI 2006: 274-285
51		Jens Gramm, Tzvika Hartman, Till Nierhoff, Roded Sharan, Till Tantau: On the Complexity of SNP Block Partitioning Under the Perfect Phylogeny Model. WABI 2006: 92-102
50		Tomer Shlomi, Daniel Segal, Eytan Ruppin, Roded Sharan: QPath: a method for querying pathways in a protein-protein interaction network. BMC Bioinformatics 7: 199 (2006)
49		Roded Sharan, Bjarni V. Halldórsson, Sorin Istrail: Islands of Tractability for Parsimony Haplotyping. IEEE/ACM Trans. Comput. Biology Bioinform. 3(3): 303-311 (2006)
48		Anya Tsalenko, Roded Sharan, Vessela Kristensen, Hege Edvardsen, Anne-Lise Børresen-Dale, Amir Ben-Dor, Zohar Yakhini: Analysis of Snp-expression Association Matrices. J. Bioinformatics and Computational Biology 4(2): 259-274 (2006)
47		Eleazar Eskin, Roded Sharan, Eran Halperin: A Note on Phasing Long Genomic Regions Using Local Haplotype Predictions. J. Bioinformatics and Computational Biology 4(3): 639-648 (2006)
46		Jacob Scott, Trey Ideker, Richard M. Karp, Roded Sharan: Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks. Journal of Computational Biology 13(2): 133-144 (2006)
45		Irit Gat-Viks, Richard M. Karp, Ron Shamir, Roded Sharan: Reconstructing Chain Functions in Genetic Networks. SIAM J. Discrete Math. 20(3): 727-740 (2006)
	2005
44		Anya Tsalenko, Roded Sharan, Hege Edvardsen, Vessela Kristensen, Anne-Lise Børresen-Dale, Amir Ben-Dor, Zohar Yakhini: Analysis of SNP-Expression Association Matrices. CSB 2005: 135-143
43		Roded Sharan, Bjarni V. Halldórsson, Sorin Istrail: Islands of Tractability for Parsimony Haplotyping. CSB 2005: 65-72
42		Roded Sharan, Eugene W. Myers: A motif-based framework for recognizing sequence families. ISMB (Supplement of Bioinformatics) 2005: 387-393
41		Jacob Scott, Trey Ideker, Richard M. Karp, Roded Sharan: Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks. RECOMB 2005: 1-13
40		Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker: Comparison of Protein-Protein Interaction Confidence Assignment Schemes. Systems Biology and Regulatory Genomics 2005: 39-50
39		Ron Shamir, Adi Maron-Katz, Amos Tanay, Chaim Linhart, Israel Steinfeld, Roded Sharan, Yosef Shiloh, Ran Elkon: EXPANDER - an integrative program suite for microarray data analysis. BMC Bioinformatics 6: 232 (2005)
38		Tzvika Hartman, Roded Sharan: A 1.5-approximation algorithm for sorting by transpositions and transreversals. J. Comput. Syst. Sci. 70(3): 300-320 (2005)
37		Roded Sharan, Jens Gramm, Zohar Yakhini, Amir Ben-Dor: Multiplexing Schemes for Generic SNP Genotyping Assays. Journal of Computational Biology 12(5): 514-533 (2005)
36		Eran Segal, Roded Sharan: A Discriminative Model for Identifying Spatial cis-Regulatory Modules. Journal of Computational Biology 12(6): 822-834 (2005)
35		Roded Sharan, Trey Ideker, Brian P. Kelley, Ron Shamir, Richard M. Karp: Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Journal of Computational Biology 12(6): 835-846 (2005)
	2004
34		Eric P. Xing, Roded Sharan, Michael I. Jordan: Bayesian haplo-type inference via the dirichlet process. ICML 2004
33		Roded Sharan, Amir Ben-Dor, Zohar Yakhini: Multiplexing Schemes for Generic SNP Genotyping Assays. Pacific Symposium on Biocomputing 2004: 140-151
32		Irit Gat-Viks, Ron Shamir, Richard M. Karp, Roded Sharan: Reconstructing Chain Functions in Genetic Networks. Pacific Symposium on Biocomputing 2004: 498-509
31		Eran Segal, Roded Sharan: A discriminative model for identifying spatial cis-regulatory modules. RECOMB 2004: 141-149
30		Roded Sharan, Trey Ideker, Brian P. Kelley, Ron Shamir, Richard M. Karp: Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data. RECOMB 2004: 282-289
29		Tzvika Hartman, Roded Sharan: A 1.5-Approximation Algorithm for Sorting by Transpositions and Transreversals. WABI 2004: 50-61
28		Ron Shamir, Roded Sharan: A fully dynamic algorithm for modular decomposition and recognition of cographs. Discrete Applied Mathematics 136(2-3): 329-340 (2004)
27		Ron Shamir, Roded Sharan, Dekel Tsur: Cluster graph modification problems. Discrete Applied Mathematics 144(1-2): 173-182 (2004)
26		Gad Kimmel, Roded Sharan, Ron Shamir: Computational Problems in Noisy SNP and Haplotype Analysis: Block Scores, Block Identification, and Population Stratification. INFORMS Journal on Computing 16(4): 360-370 (2004)
25		Amir Ben-Dor, Tzvika Hartman, Richard M. Karp, Benno Schwikowski, Roded Sharan, Zohar Yakhini: Towards Optimally Multiplexed Applications of Universal Arrays. Journal of Computational Biology 11(2/3): 476-492 (2004)
24		Roded Sharan, Asa Ben-Hur, Gabriela G. Loots, Ivan Ovcharenko: CREME: Cis-Regulatory Module Explorer for the human genome. Nucleic Acids Research 32(Web-Server-Issue): 253-256 (2004)
23		Brian P. Kelley, Bingbing Yuan, Fran Lewitter, Roded Sharan, Brent R. Stockwell, Trey Ideker: PathBLAST: a tool for alignment of protein interaction networks. Nucleic Acids Research 32(Web-Server-Issue): 83-88 (2004)
22		Itsik Pe'er, Tal Pupko, Ron Shamir, Roded Sharan: Incomplete Directed Perfect Phylogeny. SIAM J. Comput. 33(3): 590-607 (2004)
	2003
21		Roded Sharan, Ivan Ovcharenko, Asa Ben-Hur, Richard M. Karp: CREME: a framework for identifying cis-regulatory modules in human-mouse conserved segments. ISMB (Supplement of Bioinformatics) 2003: 283-291
20		Amir Ben-Dor, Tzvika Hartman, Benno Schwikowski, Roded Sharan, Zohar Yakhini: Towards optimally multiplexed applications of universal DNA tag systems. RECOMB 2003: 48-56
19		Gad Kimmel, Roded Sharan, Ron Shamir: Identifying Blocks and Sub-populations in Noisy SNP Data. WABI 2003: 303-319
18		Roded Sharan, Adi Maron-Katz, Ron Shamir: CLICK and EXPANDER: a system for clustering and visualizing gene expression data. Bioinformatics 19(14): 1787-1799 (2003)
17		Irit Gat-Viks, Roded Sharan, Ron Shamir: Scoring clustering solutions by their biological relevance. Bioinformatics 19(18): 2381-2389 (2003)
	2002
16		Amos Tanay, Roded Sharan, Ron Shamir: Discovering statistically significant biclusters in gene expression data. ISMB 2002: 136-144
15		Itsik Pe'er, Ron Shamir, Roded Sharan: On the Generality of Phylogenies from Incomplete Directed Characters. SWAT 2002: 358-367
14		Ron Shamir, Roded Sharan, Dekel Tsur: Cluster Graph Modification Problems. WG 2002: 379-390
13		Amir Ben-Dor, Itsik Pe'er, Ron Shamir, Roded Sharan: On the Complexity of Positional Sequencing by Hybridization. Journal of Computational Biology 8(4): 361-371 (2002)
	2001
12		Tal Pupko, Roded Sharan, Masami Hasegawa, Ron Shamir, Dan Graur: A Chemical-Distance-Based Test for Positive Darwinian Selection. WABI 2001: 142-155
11		Assaf Natanzon, Ron Shamir, Roded Sharan: Complexity classification of some edge modification problems. Discrete Applied Mathematics 113(1): 109-128 (2001)
10		Piotr Berman, Amir Ben-Dor, Itsik Pe'er, Roded Sharan, Ron Shamir: On the Complexity of Positional Sequencing by Hybridization Electronic Colloquium on Computational Complexity (ECCC) 8(54): (2001)
9		Pavol Hell, Ron Shamir, Roded Sharan: A Fully Dynamic Algorithm for Recognizing and Representing Proper Interval Graphs. SIAM J. Comput. 31(1): 289-305 (2001)
	2000
8		Itsik Pe'er, Ron Shamir, Roded Sharan: Incomplete Directed Perfect Phylogeny. CPM 2000: 143-153
7		Roded Sharan, Ron Shamir: Center CLICK: A Clustering Algorithm with Applications to Gene Expression Analysis. ISMB 2000: 307-316
6		Assaf Natanzon, Ron Shamir, Roded Sharan: A Polynomial Approximation Algorithm for the Minimum Fill-In Problem. SIAM J. Comput. 30(4): 1067-1079 (2000)
	1999
5		Amir Ben-Dor, Itsik Pe'er, Ron Shamir, Roded Sharan: On the Complexity of Positional Sequencing by Hybridization. CPM 1999: 88-100
4		Pavol Hell, Ron Shamir, Roded Sharan: A Fully Dynamic Algorithm for Recognizing and Representing Proper Interval Graphs. ESA 1999: 527-539
3		Assaf Natanzon, Ron Shamir, Roded Sharan: Complexity Classification of Some Edge Modification Problems. WG 1999: 65-77
	1998
2		Assaf Natanzon, Ron Shamir, Roded Sharan: A Polynomial Approximation Algorithm for the Minimum Fill-In Problem. STOC 1998: 41-47
	1996
1		Roded Sharan, Avi Wigderson: A New NCAlgorithm for Perfect Matching in Bipartite Cubic Graphs. ISTCS 1996: 202-207

Coauthor Index

1	Yair Aharonowitz	[53]
2	Vineet Bafna	[53] [60] [62] [64] [65]
3	Amir Ben-Dor	[5] [10] [13] [20] [25] [33] [37] [44] [48]
4	Asa Ben-Hur	[21] [24]
5	Piotr Berman	[10]
6	Ilya Borovok	[53]
7	Anne-Lise Børresen-Dale	[44] [48] [57]
8	Sharon Bruckner	[68] [69]
9	Erez M. Bublil	[56]
10	Banu Dost	[60] [62]
11	Hege Edvardsen	[44] [48]
12	Ran Elkon	[39]
13	Elana Erez	[56]
14	Eleazar Eskin	[47]
15	Natalia Tarnovitski Freund	[56]
16	Irit Gat-Viks	[17] [32] [45]
17	Jonathan M. Gershoni	[56]
18	Jens Gramm	[37] [51] [55]
19	Dan Graur	[12]
20	Nitin Gupta	[60] [62]
21	Bjarni V. Halldórsson	[43] [49]
22	Eran Halperin	[47]
23	Tzvika Hartman	[20] [25] [29] [38] [51]
24	Masami Hasegawa	[12]
25	Pavol Hell	[4] [9]
26	Eitan Hirsh	[58]
27	Falk Hüffner	[68] [69]
28	Trey Ideker	[23] [30] [35] [40] [41] [46] [61] [63]
29	Sorin Istrail	[43] [49]
30	Michael I. Jordan	[34] [54]
31	Maxim Kalaev	[63] [65]
32	Richard M. Karp	[21] [25] [30] [32] [35] [41] [45] [46] [68] [69]
33	Brian P. Kelley	[23] [30] [35]
34	Gad Kimmel	[19] [26]
35	Vessela Kristensen	[44] [48] [57]
36	Fran Lewitter	[23]
37	Chaim Linhart	[39]
38	Gabriela G. Loots	[24]
39	Adi Maron-Katz	[18] [39]
40	Eric Martz	[56]
41	Itay Mayrose	[56]
42	Alexander Medvedovsky	[64]
43	Eugene W. Myers (Gene Myers)	[42]
44	Assaf Natanzon	[2] [3] [6] [11]
45	Till Nierhoff	[51] [55]
46	William Stafford Noble	[67]
47	Oved Ourfali	[61]
48	Ivan Ovcharenko	[21] [24]
49	Itsik Pe'er	[5] [8] [10] [13] [15] [22]
50	Osnat Penn	[56]
51	Ron Y. Pinter	[52] [59]
52	Tal Pupko	[12] [22] [56]
53	Oleg Rokhlenko	[52] [59]
54	Nimrod D. Rubinstein	[56]
55	Eytan Ruppin	[40] [50] [52] [56] [57] [59] [60] [61] [62]
56	Benno Schwikowski	[20] [25]
57	Jacob Scott	[41] [46]
58	Daniel Segal	[50]
59	Eran Segal	[31] [36]
60	Ron Shamir	[2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [22] [26] [27] [28] [30] [32] [35] [39] [45] [68] [69]
61	Yosef Shiloh	[39]
62	Tomer Shlomi	[40] [50] [52] [56] [59] [60] [61] [62]
63	Mike Smoot	[63]
64	Israel Steinfeld	[39]
65	Brent R. Stockwell	[23]
66	Silpa Suthram	[40]
67	Amos Tanay	[16] [39]
68	Till Tantau	[51] [55]
69	Anya Tsalenko	[44] [48] [57]
70	Dekel Tsur	[14] [27]
71	Oron Vanunu	[66]
72	Avi Wigderson	[1]
73	Eric P. Xing	[34] [54]
74	Zohar Yakhini	[20] [25] [33] [37] [44] [48] [57]
75	Nir Yosef	[57] [67]
76	Bingbing Yuan	[23]
77	Shaojie Zhang	[53]
78	Uri Zwick	[64]

Colors in the list of coauthors