Leming M. Shi

	2008
18		Huixiao Hong, Zhenqiang Su, Weigong Ge, Leming M. Shi, Roger Perkins, Hong Fang, Joshua Xu, James J. Chen, Tao Han, Jim Kaput, James C. Fuscoe, Weida Tong: Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples. BMC Bioinformatics 9(S-9): (2008)
17		Leming M. Shi, Wendell D. Jones, Roderick V. Jensen, Stephen C. Harris, Roger Perkins, Federico M. Goodsaid, Lei Guo, Lisa J. Croner, Cecilie Boysen, Hong Fang, Feng Qian, Shashi Amur, Wenjun Bao, Catalin C. Barbacioru, Vincent Bertholet, Xiaoxi Megan Cao, Tzu-Ming Chu, Patrick J. Collins, Xiao-hui Fan, Felix W. Frueh: The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies. BMC Bioinformatics 9(S-9): (2008)
16		Zhenqiang Su, Huixiao Hong, Hong Fang, Leming M. Shi, Roger Perkins, Weida Tong: Very Important Pool (VIP) genes - an application for microarray-based molecular signatures. BMC Bioinformatics 9(S-9): (2008)
	2006
15		Nan Mei, Lei Guo, Lu Zhang, Leming M. Shi, Yongming Andrew Sun, Chris Fung, Carrie L. Moland, Stacey L. Dial, James C. Fuscoe, Tao Chen: Analysis of gene expression changes in relation to toxicity and tumorigenesis in the livers of Big Blue transgenic rats fed comfrey (Symphytum officinale). BMC Bioinformatics 7(S-2): (2006)
14		Lei Guo, Hong Fang, Jim Collins, Xiao-hui Fan, Stacey L. Dial, Alex Wong, Kshama Mehta, Ernice Blann, Leming M. Shi, Weida Tong, Yvonne P. Dragan: Differential gene expression in mouse primary hepatocytes exposed to the peroxisome proliferator-activated receptor alpha agonists. BMC Bioinformatics 7(S-2): (2006)
13		Tao Chen, Lei Guo, Lu Zhang, Leming M. Shi, Hong Fang, Yongming Sun, James C. Fuscoe, Nan Mei: Gene Expression Profiles Distinguish the Carcinogenic Effects of Aristolochic Acid in Target (Kidney) and Non-target (Liver) Tissues in Rats. BMC Bioinformatics 7(S-2): (2006)
12		Tao Han, Cathy D. Melvin, Leming M. Shi, William S. Branham, Carrie L. Moland, P. Scott Pine, Karol L. Thompson, James C. Fuscoe: Improvement in the Reproducibility and Accuracy of DNA Microarray Quantification by Optimizing Hybridization Conditions. BMC Bioinformatics 7(S-2): (2006)
11		Yongxi Tan, Leming M. Shi, Saber M. Hussain, Jun Xu, Weida Tong, John M. Frazier, Charles Wang: Integrating time-course microarray gene expression profiles with cytotoxicity for identification of biomarkers in primary rat hepatocytes exposed to cadmium. Bioinformatics 22(1): 77-87 (2006)
	2005
10		Zengjun Xu, Tucker A. Patterson, Jonathan D. Wren, Tao Han, Leming M. Shi, Helen Duhart, Syed F. Ali, William Slikker Jr.: A microarray study of MPP+-treated PC12 Cells: Mechanisms of toxicity (MOT) analysis using bioinformatics tools. BMC Bioinformatics 6(S-2): (2005)
9		Hong Fang, Weida Tong, Roger Perkins, Leming M. Shi, Huixiao Hong, X. Cao, Qian Xie, S. H. Yim, J. M. Ward, Henry C. Pitot, Yvonne P. Dragan: Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling. BMC Bioinformatics 6(S-2): (2005)
8		Leming M. Shi, Weida Tong, Hong Fang, Uwe Scherf, Jing Han, Raj K. Puri, Felix W. Frueh, Federico M. Goodsaid, Lei Guo, Zhenqiang Su, Tao Han, James C. Fuscoe, Z. Alex Xu, Tucker A. Patterson, Huixiao Hong, Qian Xie, Roger Perkins, James J. Chen, Daniel A. Casciano: Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential. BMC Bioinformatics 6(S-2): (2005)
7		Leming M. Shi, Weida Tong, Zhenqiang Su, Tao Han, Jing Han, Raj K. Puri, Hong Fang, Felix W. Frueh, Federico M. Goodsaid, Lei Guo, William S. Branham, James J. Chen, Z. Alex Xu, Stephen C. Harris, Huixiao Hong, Qian Xie, Roger Perkins, James C. Fuscoe: Microarray scanner calibration curves: characteristics and implications. BMC Bioinformatics 6(S-2): (2005)
6		Huixiao Hong, Yvonne P. Dragan, Joshua Epstein, Candee Teitel, Bangzheng Chen, Qian Xie, Hong Fang, Leming M. Shi, Roger Perkins, Weida Tong: Quality control and quality assessment of data from surface-enhanced laser desorption/ionization (SELDI) time-of flight (TOF) mass spectrometry (MS). BMC Bioinformatics 6(S-2): (2005)
	2004
5		Yongxi Tan, Leming M. Shi, Weida Tong, G. T. Gene Hwang, Charles Wang: Multi-class tumor classification by discriminant partial least squares using microarray gene expression data and assessment of classification models. Computational Biology and Chemistry 28(3): 235-243 (2004)
4		Chenzhong Liao, Aihua Xie, Leming M. Shi, Jiaju Zhou, Xianping Lu: Eigenvalue Analysis of Peroxisome Proliferator-Activated Receptor gamma Agonists. Journal of Chemical Information and Modeling 44(1): 230-238 (2004)
	2001
3		Leming M. Shi, Hong Fang, Weida Tong, Jie Wu, Roger Perkins, Robert M. Blair, William S. Branham, Stacey L. Dial, Carrie L. Moland, Daniel M. Sheehan: QSAR Models Using a Large Diverse Set of Estrogens. Journal of Chemical Information and Computer Sciences 41(1): 186-195 (2001)
	2000
2		Leming M. Shi, Yi Fan, Jae K. Lee, Mark Waltham, Darren T. Andrews, Uwe Scherf, Kenneth D. Paull, John N. Weinstein: Mining and Visualizing Large Anticancer Drug Discovery Databases. Journal of Chemical Information and Computer Sciences 40(2): 367-379 (2000)
	1998
1		Leming M. Shi, Yi Fan, Timothy G. Myers, Patrick M. O'Connor, Kenneth D. Paull, Stephen H. Friend, John N. Weinstein: Mining the NCI Anticancer Drug Discovery Databases: Genetic Function Approximation for the QSAR Study of Anticancer Ellipticine Analogues. Journal of Chemical Information and Computer Sciences 38(2): 189-199 (1998)

Coauthor Index

1	Syed F. Ali	[10]
2	Shashi Amur	[17]
3	Darren T. Andrews	[2]
4	Wenjun Bao	[17]
5	Catalin C. Barbacioru	[17]
6	Vincent Bertholet	[17]
7	Robert M. Blair	[3]
8	Ernice Blann	[14]
9	Cecilie Boysen	[17]
10	William S. Branham	[3] [7] [12]
11	X. Cao	[9]
12	Xiaoxi Megan Cao	[17]
13	Daniel A. Casciano	[8]
14	Bangzheng Chen	[6]
15	James J. Chen	[7] [8] [18]
16	Tao Chen	[13] [15]
17	Tzu-Ming Chu	[17]
18	Jim Collins	[14]
19	Patrick J. Collins	[17]
20	Lisa J. Croner	[17]
21	Stacey L. Dial	[3] [14] [15]
22	Yvonne P. Dragan	[6] [9] [14]
23	Helen Duhart	[10]
24	Joshua Epstein	[6]
25	Xiao-hui Fan	[14] [17]
26	Yi Fan	[1] [2]
27	Hong Fang	[3] [6] [7] [8] [9] [13] [14] [16] [17] [18]
28	John M. Frazier	[11]
29	Stephen H. Friend	[1]
30	Felix W. Frueh	[7] [8] [17]
31	Chris Fung	[15]
32	James C. Fuscoe	[7] [8] [12] [13] [15] [18]
33	Weigong Ge	[18]
34	Federico M. Goodsaid	[7] [8] [17]
35	Lei Guo	[7] [8] [13] [14] [15] [17]
36	Jing Han	[7] [8]
37	Tao Han	[7] [8] [10] [12] [18]
38	Stephen C. Harris	[7] [17]
39	Huixiao Hong	[6] [7] [8] [9] [16] [18]
40	Saber M. Hussain	[11]
41	G. T. Gene Hwang	[5]
42	Roderick V. Jensen	[17]
43	Wendell D. Jones	[17]
44	Jim Kaput	[18]
45	Jae K. Lee	[2]
46	Chenzhong Liao	[4]
47	Xianping Lu	[4]
48	Kshama Mehta	[14]
49	Nan Mei	[13] [15]
50	Cathy D. Melvin	[12]
51	Carrie L. Moland	[3] [12] [15]
52	Timothy G. Myers	[1]
53	Patrick M. O'Connor	[1]
54	Tucker A. Patterson	[8] [10]
55	Kenneth D. Paull	[1] [2]
56	Roger Perkins	[3] [6] [7] [8] [9] [16] [17] [18]
57	P. Scott Pine	[12]
58	Henry C. Pitot	[9]
59	Raj K. Puri	[7] [8]
60	Feng Qian	[17]
61	Uwe Scherf	[2] [8]
62	Daniel M. Sheehan	[3]
63	William Slikker Jr.	[10]
64	Zhenqiang Su	[7] [8] [16] [18]
65	Yongming Sun	[13]
66	Yongming Andrew Sun	[15]
67	Yongxi Tan	[5] [11]
68	Candee Teitel	[6]
69	Karol L. Thompson	[12]
70	Weida Tong	[3] [5] [6] [7] [8] [9] [11] [14] [16] [18]
71	Mark Waltham	[2]
72	Charles Wang	[5] [11]
73	J. M. Ward	[9]
74	John N. Weinstein	[1] [2]
75	Alex Wong	[14]
76	Jonathan D. Wren	[10]
77	Jie Wu	[3]
78	Aihua Xie	[4]
79	Qian Xie	[6] [7] [8] [9]
80	Joshua Xu	[18]
81	Jun Xu	[11]
82	Z. Alex Xu	[7] [8]
83	Zengjun Xu	[10]
84	S. H. Yim	[9]
85	Lu Zhang	[13] [15]
86	Jiaju Zhou	[4]