Ilya Shmulevich

	2009
35		Peter Krawitz, Ilya Shmulevich: Boolean Modeling of Biological Networks. Encyclopedia of Complexity and Systems Science 2009: 599-608
34		John Boyle, Hector Rovira, Christopher C. Cavnor, David B. Burdick, Sarah A. Killcoyne, Ilya Shmulevich: Adaptable data management for systems biology investigations. BMC Bioinformatics 10: (2009)
33		Theo A. Knijnenburg, Lodewyk F. A. Wessels, Marcel J. T. Reinders, Ilya Shmulevich: Fewer permutations, more accurate P-values. Bioinformatics 25(12): (2009)
	2008
32		John Boyle, Christopher C. Cavnor, Sarah A. Killcoyne, Ilya Shmulevich: Systems biology driven software design for the research enterprise. BMC Bioinformatics 9: (2008)
31		David J. Galas, Matti Nykter, Gregory W. Carter, Nathan D. Price, Ilya Shmulevich: Set-based complexity and biological information CoRR abs/0801.4024: (2008)
30		Harri Lähdesmäki, Ilya Shmulevich: Learning the structure of dynamic Bayesian networks from time series and steady state measurements. Machine Learning 71(2-3): 185-217 (2008)
	2007
29		Ricardo Z. N. Vêncio, Ilya Shmulevich: ProbCD: enrichment analysis accounting for categorization uncertainty. BMC Bioinformatics 8: (2007)
28		Miika Ahdesmäki, Harri Lähdesmäki, Andrew Gracey, Ilya Shmulevich, Olli Yli-Harja: Robust regression for periodicity detection in non-uniformly sampled time-course gene expression data. BMC Bioinformatics 8: (2007)
27		Ricardo Z. N. Vêncio, Leonardo Varuzza, Carlos A. de B. Pereira, Helena Brentani, Ilya Shmulevich: Simcluster: clustering enumeration gene expression data on the simplex space. BMC Bioinformatics 8: (2007)
	2006
26		Ioan Tabus, Andrea Hategan, Cristian Mircean, Jorma Rissanen, Ilya Shmulevich, Wei Zhang, Jaakko Astola: Nonlinear modeling of protein expressions in protein arrays. IEEE Transactions on Signal Processing 54(6-2): 2394-2407 (2006)
25		Harri Lähdesmäki, Sampsa Hautaniemi, Ilya Shmulevich, Olli Yli-Harja: Relationships between probabilistic Boolean networks and dynamic Bayesian networks as models of gene regulatory networks. Signal Processing 86(4): 814-834 (2006)
	2005
24		Harri Lähdesmäki, Ilya Shmulevich, Valerie Dunmire, Olli Yli-Harja, Wei Zhang: In silico microdissection of microarray data from heterogeneous cell populations. BMC Bioinformatics 6: 54 (2005)
23		Cristian Mircean, Ilya Shmulevich, David Cogdell, Woonyoung Choi, Yu Jia, Ioan Tabus, Stanley R. Hamilton, Wei Zhang: Robust estimation of protein expression ratios with lysate microarray technology. Bioinformatics 21(9): 1935-1942 (2005)
22		Carlos Gershenson, Stuart A. Kauffman, Ilya Shmulevich: The Role of Redundancy in the Robustness of Random Boolean Networks CoRR abs/nlin/0511018: (2005)
21		Trent Toulouse, Ping Ao, Ilya Shmulevich, Stuart A. Kauffman: Noise in a small genetic circuit that undergoes bifurcation. Complexity 11(1): 45-51 (2005)
20		Antti Niemistö, Valerie Dunmire, Olli Yli-Harja, Wei Zhang, Ilya Shmulevich: Robust quantification of in vitro angiogenesis through image analysis. IEEE Trans. Med. Imaging 24(4): 549-553 (2005)
19		Marcel Brun, Edward R. Dougherty, Ilya Shmulevich: Steady-state probabilities for attractors in probabilistic Boolean networks. Signal Processing 85(10): 1993-2013 (2005)
	2004
18		Ronaldo Fumio Hashimoto, Seungchan Kim, Ilya Shmulevich, Wei Zhang, Michael L. Bittner, Edward R. Dougherty: Growing genetic regulatory networks from seed genes. Bioinformatics 20(8): 1241-1247 (2004)
	2003
17		Harri Lähdesmäki, Ilya Shmulevich, Olli Yli-Harja: On Learning Gene Regulatory Networks Under the Boolean Network Model. Machine Learning 52(1-2): 147-167 (2003)
16		Jaakko Astola, Edward R. Dougherty, Ilya Shmulevich, Ioan Tabus: Genomic signal processing. Signal Processing 83(4): 691-694 (2003)
15		Edward R. Dougherty, Ilya Shmulevich: Mappings between probabilistic Boolean networks. Signal Processing 83(4): 799-809 (2003)
	2002
14		Ilya Shmulevich, Edward R. Dougherty, Wei Zhang: ayesian automatic relevance determination algorithms for classifying gene expression data. Bioinformatics 18(10): 1332-1339 (2002)
13		Ilya Shmulevich, Edward R. Dougherty, Seungchan Kim, Wei Zhang: Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks. Bioinformatics 18(2): 261-274 (2002)
12		Ilya Shmulevich, Wei Zhang: Binary analysis and optimization-based normalization of gene expression data. Bioinformatics 18(4): 555-565 (2002)
11		Aleksey D. Korshunov, Ilya Shmulevich: On the distribution of the number of monotone Boolean functions relative to the number of lower units. Discrete Mathematics 257(2-3): 463-479 (2002)
10		Vladimir Katkovnik, Ilya Shmulevich: Kernel density estimation with adaptive varying window size. Pattern Recognition Letters 23(14): 1641-1648 (2002)
	2001
9		Ilya Shmulevich, Moncef Gabbouj, Jaakko Astola: Complexity of the consistency problem for certain Post classes. IEEE Transactions on Systems, Man, and Cybernetics, Part B 31(2): 251-253 (2001)
8		Ilya Shmulevich, Aleksey D. Korshunov, Jaakko Astola: Almost all monotone Boolean functions are polynomially learnable using membership queries. Inf. Process. Lett. 79(5): 211-213 (2001)
7		Pertti Koivisto, Olli Yli-Harja, Antti Niemistö, Ilya Shmulevich: Breakdown probabilities of recursive stack filters. Signal Processing 81(1): 227-231 (2001)
6		Olli Yli-Harja, Pertti Koivisto, J. Andrew Bangham, Gavin C. Cawley, Richard Harvey, Ilya Shmulevich: Simplified implementation of the recursive median sieve. Signal Processing 81(7): 1565-1570 (2001)
	2000
5		Bogdan Cramariuc, Ilya Shmulevich, Moncef Gabbouj, Asko Makela: A New Image Similarity Measure Based on Ordinal Correlation. ICIP 2000
	1999
4		Vladimir P. Melnik, Ilya Shmulevich, Karen Egiazarian, Jaakko Astola: Image Denoising Using a Block-Median Pyramid. ICIP (4) 1999: 162-166
3		Ilya Shmulevich, Vladimir P. Melnik, Karen Egiazarian: Combination of transform based denoising and stack filtering for non-Gaussian noise suppression. NSIP 1999: 282-286
2		Olli Yli-Harja, Ilya Shmulevich, Kjell Lemström: Graph-based smoothing of class data with applications in musical key finding. NSIP 1999: 311-315
1		Ilya Shmulevich, Vladimir P. Melnik, Karen Egiazarian: Optimization of stack filters using sample selection probabilities. NSIP 1999: 496-500

Coauthor Index

1	Miika Ahdesmäki	[28]
2	Ping Ao	[21]
3	Jaakko Astola	[4] [8] [9] [16] [26]
4	J. Andrew Bangham	[6]
5	Michael L. Bittner	[18]
6	John Boyle	[32] [34]
7	Helena Brentani	[27]
8	Marcel Brun	[19]
9	David B. Burdick	[34]
10	Gregory W. Carter	[31]
11	Christopher C. Cavnor	[32] [34]
12	Gavin C. Cawley	[6]
13	Woonyoung Choi	[23]
14	David Cogdell	[23]
15	Bogdan Cramariuc	[5]
16	Edward R. Dougherty	[13] [14] [15] [16] [18] [19]
17	Valerie Dunmire	[20] [24]
18	Karen O. Egiazarian (Karen Egiazarian)	[1] [3] [4]
19	Moncef Gabbouj	[5] [9]
20	David J. Galas	[31]
21	Carlos Gershenson (Carlos Gershenson García)	[22]
22	Andrew Gracey	[28]
23	Stanley R. Hamilton	[23]
24	Richard Harvey	[6]
25	Ronaldo Fumio Hashimoto	[18]
26	Andrea Hategan	[26]
27	Sampsa Hautaniemi	[25]
28	Yu Jia	[23]
29	Vladimir Katkovnik	[10]
30	Stuart A. Kauffman	[21] [22]
31	Sarah A. Killcoyne	[32] [34]
32	Seungchan Kim	[13] [18]
33	Theo A. Knijnenburg	[33]
34	Pertti Koivisto	[6] [7]
35	Aleksey D. Korshunov	[8] [11]
36	Peter Krawitz	[35]
37	Harri Lähdesmäki	[17] [24] [25] [28] [30]
38	Kjell Lemström	[2]
39	Asko Makela	[5]
40	Vladimir P. Melnik	[1] [3] [4]
41	Cristian Mircean	[23] [26]
42	Antti Niemistö	[7] [20]
43	Matti Nykter	[31]
44	Carlos A. de B. Pereira	[27]
45	Nathan D. Price	[31]
46	Marcel J. T. Reinders	[33]
47	Jorma Rissanen	[26]
48	Hector Rovira	[34]
49	Ioan Tabus	[16] [23] [26]
50	Trent Toulouse	[21]
51	Leonardo Varuzza	[27]
52	Ricardo Z. N. Vêncio	[27] [29]
53	Lodewyk F. A. Wessels	[33]
54	Olli Yli-Harja	[2] [6] [7] [17] [20] [24] [25] [28]
55	Wei Zhang	[12] [13] [14] [18] [20] [23] [24] [26]

Colors in the list of coauthors