 | 2008 |
|---|
| 8 |       | Nak-Kyeong Kim,
Kannan Tharakaraman,
Leonardo Mariño-Ramírez,
John L. Spouge:
Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor binding sites.
BMC Bioinformatics 9: (2008) |
| 2006 |
|---|
| 7 | | Kannan Tharakaraman,
Leonardo Mariño-Ramírez,
Sergey Sheetlin,
David Landsman,
John L. Spouge:
Scanning sequences after Gibbs sampling to find multiple occurrences of functional elements.
BMC Bioinformatics 7: 408 (2006) |
| 6 | | Nak-Kyeong Kim,
Kannan Tharakaraman,
John L. Spouge:
Adding sequence context to a Markov background model improves the identification of regulatory elements.
Bioinformatics 22(23): 2870-2875 (2006) |
| 2005 |
|---|
| 5 | | Kannan Tharakaraman,
Leonardo Mariño-Ramírez,
Sergey Sheetlin,
David Landsman,
John L. Spouge:
Alignments anchored on genomic landmarks can aid in the identification of regulatory elements.
ISMB (Supplement of Bioinformatics) 2005: 440-448 |
| 2004 |
|---|
| 4 | | Yonil Park,
John L. Spouge:
Searching for Multiple Words in a Markov Sequence.
INFORMS Journal on Computing 16(4): 341-347 (2004) |
| 2002 |
|---|
| 3 |  | Yonil Park,
John L. Spouge:
The correlation error and finite-size correction in an ungapped sequence alignment.
Bioinformatics 18(9): 1236-1242 (2002) |
| 2 | | S. Rajasekaran,
X. Jin,
John L. Spouge:
The Efficient Computation of Position-Specific Match Scores with the Fast Fourier Transform.
Journal of Computational Biology 9(1): 23-33 (2002) |
| 1991 |
|---|
| 1 | | John L. Spouge:
Fast optimal alignment.
Computer Applications in the Biosciences 7(1): 1-7 (1991) |
