Alexandros Stamatakis

	2009
32		Nikolaos Alachiotis, Euripides Sotiriades, Apostolos Dollas, Alexandros Stamatakis: Exploring FPGAs for accelerating the phylogenetic likelihood function. IPDPS 2009: 1-8
31		Nicholas D. Pattengale, Masoud Alipour, Olaf R. P. Bininda-Emonds, Bernard M. E. Moret, Alexandros Stamatakis: How Many Bootstrap Replicates Are Necessary?. RECOMB 2009: 184-200
	2008
30		Alexandros Stamatakis, Michael Ott: Exploiting Fine-Grained Parallelism in the Phylogenetic Likelihood Function with MPI, Pthreads, and OpenMP: A Performance Study. PRIB 2008: 424-435
29		Michael Ott, Jaroslaw Zola, Srinivas Aluru, Andrew D. Johnson, Daniel Janies, Alexandros Stamatakis: Large-scale phylogenetic analysis on current HPC architectures. Scientific Programming 16(2-3): 255-270 (2008)
	2007
28		Filip Blagojevic, Alexandros Stamatakis, Christos D. Antonopoulos, Dimitrios S. Nikolopoulos: RAxML-Cell: Parallel Phylogenetic Tree Inference on the Cell Broadband Engine. IPDPS 2007: 1-10
27		Filip Blagojevic, Dimitrios S. Nikolopoulos, Alexandros Stamatakis, Christos D. Antonopoulos: Dynamic multigrain parallelization on the cell broadband engine. PPOPP 2007: 90-100
26		Michael Ott, Jaroslaw Zola, Alexandros Stamatakis, Srinivas Aluru: Large-scale maximum likelihood-based phylogenetic analysis on the IBM BlueGene/L. SC 2007: 4
25		Alexandros Stamatakis, Alexander F. Auch, Jan P. Meier-Kolthoff, Markus Göker: AxPcoords & parallel AxParafit: statistical co-phylogenetic analyses on thousands of taxa. BMC Bioinformatics 8: (2007)
24		Filip Blagojevic, Dimitrios S. Nikolopoulos, Alexandros Stamatakis, Christos D. Antonopoulos, Matthew Curtis-Maury: Runtime scheduling of dynamic parallelism on accelerator-based multi-core systems. Parallel Computing 33(10-11): 700-719 (2007)
23		Alexandros Stamatakis, Filip Blagojevic, Dimitrios S. Nikolopoulos, Christos D. Antonopoulos: Exploring New Search Algorithms and Hardware for Phylogenetics: RAxML Meets the IBM Cell. VLSI Signal Processing 48(3): 271-286 (2007)
	2006
22		Alexandros Stamatakis: Phylogenetic models of rate heterogeneity: a high performance computing perspective. IPDPS 2006
21		David A. Bader, Usman Roshan, Alexandros Stamatakis: Computational Grand Challenges in Assembling the Tree of Life: Problems and Solutions. Advances in Computers 68: 128-179 (2006)
20		Alexandros Stamatakis: RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22(21): 2688-2690 (2006)
	2005
19		Z. Du, Alexandros Stamatakis, F. Lin, Usman Roshan, Luay Nakhleh: Parallel Divide-and-Conquer Phylogeny Reconstruction by Maximum Likelihood. HPCC 2005: 776-785
18		Alexandros Stamatakis: An Efficient Program for Phylogenetic Inference Using Simulated Annealing. IPDPS 2005
17		Adam Arvelakis, Martin Reczko, Alexandros Stamatakis, Alkiviadis Symeonidis, Ioannis G. Tollis: Using Treemaps to Visualize Phylogenetic Trees. ISBMDA 2005: 283-293
16		Alexandros Stamatakis, Michael Ott, Thomas Ludwig: RAxML-OMP: An Efficient Program for Phylogenetic Inference on SMPs. PaCT 2005: 288-302
15		Maria Charalambous, Pedro Trancoso, Alexandros Stamatakis: Initial Experiences Porting a Bioinformatics Application to a Graphics Processor. Panhellenic Conference on Informatics 2005: 415-425
14		Alexandros Stamatakis, Thomas Ludwig, Harald Meier: RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics 21(4): 456-463 (2005)
13		Alexandros Stamatakis, Thomas Ludwig, Harald Meier: RAxML-II: a program for sequential, parallel and distributed inference of large phylogenetic trees. Concurrency and Computation: Practice and Experience 17(14): 1705-1723 (2005)
12		Alexandros Stamatakis, Markus Lindermeier, Michael Ott, Thomas Ludwig, Harald Meier: DRAxML at home: a distributed program for computation of large phylogenetic trees. Future Generation Comp. Syst. 21(4): 725-730 (2005)
	2004
11		Alexandros Stamatakis, Thomas Ludwig, Harald Meier: Parallel Inference of a 10.000-Taxon Phylogeny with Maximum Likelihood. Euro-Par 2004: 997-1004
10		Alexandros Stamatakis, Harald Meier, Thomas Ludwig: New Fast and Accurate Heuristics for Inference of Large Phylogenetic Trees. IPDPS 2004
9		Alexandros Stamatakis, Thomas Ludwig, Harald Meier: A fast program for maximum likelihood-based inference of large phylogenetic trees. SAC 2004: 197-201
8		Alexandros Stamatakis, Thomas Ludwig, Harald Meier: The AxML program family for maximum likelihood-based phylogenetic tree inference. Concurrency - Practice and Experience 16(9): 975-988 (2004)
	2003
7		Alexandros Stamatakis, Thomas Ludwig: Phylogenetic Tree Inference on PC Architectures with AxML/PAxML. IPDPS 2003: 157
6		Alexandros Stamatakis, Markus Lindermeier, Michael Ott, Thomas Ludwig, Harald Meier: DAxML: A Program for Distributed Computation of Phylogenetic Trees Based on Load Managed CORBA. PaCT 2003: 538-548
	2002
5		Alexandros Stamatakis, Thomas Ludwig, Harald Meier, Marty J. Wolf: AxML: A Fast Program for Sequential and Parallel Phylogenetic Tree Calculations Based on the Maximum Likelihood Method. CSB 2002: 21-
4		Alexandros Stamatakis, Thomas Ludwig, Harald Meier, Marty J. Wolf: Accelerating parallel maximum likelihood-based phylogenetic tree calculations using subtree equality vectors. SC 2002: 1-16
3		Thomas Ludwig, Markus Lindermeier, Alexandros Stamatakis, Günther Rackl: Tool environments in CORBA-based medical high-performance computing. Future Generation Comp. Syst. 18(6): 841-847 (2002)
2		Günther Rackl, Thomas Ludwig, Markus Lindermeier, Alexandros Stamatakis: Efficiently building on-line tools for distributed heterogeneous environments. Scientific Programming 10(1): 67-74 (2002)
	2001
1		Thomas Ludwig, Markus Lindermeier, Alexandros Stamatakis, Günther Rackl: Tool Environments in CORBA-Based Medical High Performance Computing. PaCT 2001: 447-455

Coauthor Index

1	Nikolaos Alachiotis	[32]
2	Masoud Alipour	[31]
3	Srinivas Aluru	[26] [29]
4	Christos D. Antonopoulos	[23] [24] [27] [28]
5	Adam Arvelakis	[17]
6	Alexander F. Auch	[25]
7	David A. Bader	[21]
8	Olaf R. P. Bininda-Emonds	[31]
9	Filip Blagojevic	[23] [24] [27] [28]
10	Maria Charalambous	[15]
11	Matthew Curtis-Maury	[24]
12	Apostolos Dollas	[32]
13	Z. Du	[19]
14	Markus Göker	[25]
15	Daniel Janies	[29]
16	Andrew D. Johnson	[29]
17	F. Lin	[19]
18	Markus Lindermeier	[1] [2] [3] [6] [12]
19	Thomas Ludwig	[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [16]
20	Harald Meier	[4] [5] [6] [8] [9] [10] [11] [12] [13] [14]
21	Jan P. Meier-Kolthoff	[25]
22	Bernard M. E. Moret	[31]
23	Luay Nakhleh	[19]
24	Dimitrios S. Nikolopoulos	[23] [24] [27] [28]
25	Michael Ott	[6] [12] [16] [26] [29] [30]
26	Nicholas D. Pattengale	[31]
27	Günther Rackl	[1] [2] [3]
28	Martin Reczko	[17]
29	Usman Roshan	[19] [21]
30	Euripides Sotiriades	[32]
31	Alkiviadis Symeonidis	[17]
32	Ioannis G. Tollis	[17]
33	Pedro Trancoso	[15]
34	Marty J. Wolf	[4] [5]
35	Jaroslaw Zola	[26] [29]

Colors in the list of coauthors