Christian J. Stoeckert Jr. Coauthor index pubzone.org

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33Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJason E. Stajich, Todd Harris, Brian P. Brunk, John Brestelli, Steve Fischer, Omar S. Harb, Jessica C. Kissinger, Wei Li, Vishal Nayak, Deborah F. Pinney, Christian J. Stoeckert Jr., David S. Roos: FungiDB: an integrated functional genomics database for fungi. Nucleic Acids Research 40(Database-Issue): 675-681 (2012)
2011
32Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGregory R. Grant, Michael H. Farkas, Angel D. Pizarro, Nicholas F. Lahens, Jonathan Schug, Brian P. Brunk, Christian J. Stoeckert Jr., John B. Hogenesch, Eric A. Pierce: Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM). Bioinformatics 27(18): 2518-2528 (2011)
31Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLCristina Aurrecoechea, Ana Barreto, John Brestelli, Brian P. Brunk, Elisabet V. Caler, Steve Fischer, Bindu Gajria, Xin Gao, Alan Gingle, Gregory R. Grant, Omar S. Harb, Mark Heiges, John Iodice, Jessica C. Kissinger, Eileen Kraemer, Wei Li, Vishal Nayak, Cary Pennington, Deborah F. Pinney, Brian Pitts, David S. Roos, Ganesh Srinivasamoorthy, Christian J. Stoeckert Jr., Charles Treatman, Haiming Wang: AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species. Nucleic Acids Research 39(Database-Issue): 612-619 (2011)
2010
30Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRavi Shankar, Helen E. Parkinson, Tony Burdett, Emma Hastings, Junmin Liu, Michael Miller, Rashmi Srinivasa, Joseph White, Alvis Brazma, Gavin Sherlock, Christian J. Stoeckert Jr., Catherine A. Ball: Annotare - a tool for annotating high-throughput biomedical investigations and resulting data. Bioinformatics 26(19): 2470-2471 (2010)
29Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLCristina Aurrecoechea, John Brestelli, Brian P. Brunk, Steve Fischer, Bindu Gajria, Xin Gao, Alan Gingle, Gregory R. Grant, Omar S. Harb, Mark Heiges, Frank Innamorato, John Iodice, Jessica C. Kissinger, Eileen Kraemer, Wei Li, John A. Miller, Vishal Nayak, Cary Pennington, Deborah F. Pinney, David S. Roos, Chris Ross, Ganesh Srinivasamoorthy, Christian J. Stoeckert Jr., Ryan Thibodeau, Charles Treatman, Haiming Wang: EuPathDB: a portal to eukaryotic pathogen databases. Nucleic Acids Research 38(Database-Issue): 415-419 (2010)
28Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMartin Aslett, Cristina Aurrecoechea, Matthew Berriman, John Brestelli, Brian P. Brunk, Mark Carrington, Daniel P. Depledge, Steve Fischer, Bindu Gajria, Xin Gao, Malcolm J. Gardner, Alan Gingle, Gregory R. Grant, Omar S. Harb, Mark Heiges, Christiane Hertz-Fowler, Robin Houston, Frank Innamorato, John Iodice, Jessica C. Kissinger, Eileen Kraemer, Wei Li, Flora J. Logan, John A. Miller, Siddhartha Mitra, Peter J. Myler, Vishal Nayak, Cary Pennington, Isabelle Phan, Deborah F. Pinney, Gowthaman Ramasamy, Matthew B. Rogers, David S. Roos, Chris Ross, Dhileep Sivam, Deborah F. Smith, Ganesh Srinivasamoorthy, Christian J. Stoeckert Jr., Sandhya Subramanian, Ryan Thibodeau, Adrian Tivey, Charles Treatman, Giles Velarde, Haiming Wang: TriTrypDB: a functional genomic resource for the Trypanosomatidae. Nucleic Acids Research 38(Database-Issue): 457-462 (2010)
2009
27Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGhislain Bidaut, Christian J. Stoeckert Jr.: Characterization of Unknown Adult Stem Cell Samples by Large Scale Data Integration and Artificial Neural Networks. Pacific Symposium on Biocomputing 2009: 356-367
26Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLCristina Aurrecoechea, John Brestelli, Brian P. Brunk, Jane M. Carlton, Jennifer Dommer, Steve Fischer, Bindu Gajria, Xin Gao, Alan Gingle, Gregory R. Grant, Omar S. Harb, Mark Heiges, Frank Innamorato, John Iodice, Jessica C. Kissinger, Eileen Kraemer, Wei Li, John A. Miller, Hilary G. Morrison, Vishal Nayak, Cary Pennington, Deborah F. Pinney, David S. Roos, Chris Ross, Christian J. Stoeckert Jr., Steven Sullivan, Charles Treatman, Haiming Wang: GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis. Nucleic Acids Research 37(Database-Issue): 526-530 (2009)
25Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLCristina Aurrecoechea, John Brestelli, Brian P. Brunk, Jennifer Dommer, Steve Fischer, Bindu Gajria, Xin Gao, Alan Gingle, Gregory R. Grant, Omar S. Harb, Mark Heiges, Frank Innamorato, John Iodice, Jessica C. Kissinger, Eileen Kraemer, Wei Li, John A. Miller, Vishal Nayak, Cary Pennington, Deborah F. Pinney, David S. Roos, Chris Ross, Christian J. Stoeckert Jr., Charles Treatman, Haiming Wang: PlasmoDB: a functional genomic database for malaria parasites. Nucleic Acids Research 37(Database-Issue): 539-543 (2009)
2008
24Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLBindu Gajria, Amit Bahl, John Brestelli, Jennifer Dommer, Steve Fischer, Xin Gao, Mark Heiges, John Iodice, Jessica C. Kissinger, Aaron J. Mackey, Deborah F. Pinney, David S. Roos, Christian J. Stoeckert Jr., Haiming Wang, Brian P. Brunk: ToxoDB: an integrated Toxoplasma gondii database resource. Nucleic Acids Research 36(Database-Issue): 553-556 (2008)
2007
23Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJonathan Schug, Max Mintz, Christian J. Stoeckert Jr.: Data Integration and Pattern-Finding in Biological Sequence with TESS's Annotation Grammar and Extraction Language (AnGEL). DILS 2007: 188-203
22Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLCristina Aurrecoechea, Mark Heiges, Haiming Wang, Zhiming Wang, Steve Fischer, Philippa Rhodes, John A. Miller, Eileen Kraemer, Christian J. Stoeckert Jr., David S. Roos, Jessica C. Kissinger: ApiDB: integrated resources for the apicomplexan bioinformatics resource center. Nucleic Acids Research 35(Database-Issue): 427-430 (2007)
21Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJoan M. Mazzarelli, John Brestelli, Regina K. Gorski, Junmin Liu, Elisabetta Manduchi, Deborah F. Pinney, Jonathan Schug, Peter White, Klaus H. Kaestner, Christian J. Stoeckert Jr.: EPConDB: a web resource for gene expression related to pancreatic development, beta-cell function and diabetes. Nucleic Acids Research 35(Database-Issue): 751-755 (2007)
2006
20Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLTim F. Rayner, Philippe Rocca-Serra, Paul T. Spellman, Helen C. Causton, Anna Farne, Ele Holloway, Rafael A. Irizarry, Junmin Liu, Donald Maier, Michael Miller, Kjell Petersen, John Quackenbush, Gavin Sherlock, Christian J. Stoeckert Jr., Joseph White, Patricia L. Whetzel, Farrell Wymore, Helen E. Parkinson, Ugis Sarkans, Catherine A. Ball, Alvis Brazma: A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB. BMC Bioinformatics 7: 489 (2006)
19Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPatricia L. Whetzel, Helen E. Parkinson, Helen C. Causton, Liju Fan, Jennifer Fostel, Gilberto Fragoso, Laurence Game, Mervi Heiskanen, Norman Morrison, Philippe Rocca-Serra, Susanna-Assunta Sansone, Chris J. Taylor, Joseph White, Christian J. Stoeckert Jr.: The MGED Ontology: a resource for semantics-based description of microarray experiments. Bioinformatics 22(7): 866-873 (2006)
18Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLFeng Chen, Aaron J. Mackey, Christian J. Stoeckert Jr., David S. Roos: OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups. Nucleic Acids Research 34(Database-Issue): 363-368 (2006)
2005
17Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGregory R. Grant, Junmin Liu, Christian J. Stoeckert Jr.: A practical false discovery rate approach to identifying patterns of differential expression in microarray data. Bioinformatics 21(11): 2684-2690 (2005)
2004
16Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAndrew Jones, Ela Hunt, Jonathan M. Wastling, Angel D. Pizarro, Christian J. Stoeckert Jr.: An object model and database for functional genomics. Bioinformatics 20(10): 1583-1590 (2004)
15Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLElisabetta Manduchi, Gregory R. Grant, H. He, Junmin Liu, Matthew D. Mailman, Angel D. Pizarro, Patricia L. Whetzel, Christian J. Stoeckert Jr.: RAD and the RAD Study-Annotator: an approach to collection, organization and exchange of all relevant information for high-throughput gene expression studies. Bioinformatics 20(4): 452-459 (2004)
14Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLLi Li, Jonathan Crabtree, Steve Fischer, Deborah F. Pinney, Christian J. Stoeckert Jr., L. David Sibley, David S. Roos: ApiEST-DB: analyzing clustered EST data of the apicomplexan parasites. Nucleic Acids Research 32(Database-Issue): 326-328 (2004)
2003
13Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAmit Bahl, Brian P. Brunk, Jonathan Crabtree, Martin J. Fraunholz, Bindu Gajria, Gregory R. Grant, Hagai Ginsburg, Dinesh Gupta, Jessica C. Kissinger, Philip Labo, Li Li, Matthew D. Mailman, Arthur J. Milgram, David S. Pearson, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr., Patricia L. Whetzel: PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data. Nucleic Acids Research 31(1): 212-215 (2003)
12Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLChristian J. Stoeckert Jr.: Common Objects: Think Global, Act Local. OMICS 7(1): 103-104 (2003)
2002
11Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLCatherine A. Ball, Gavin Sherlock, Helen E. Parkinson, Philippe Rocca-Serra, Catherine Brooksbank, Helen C. Causton, Duccio Cavalieri, Terry Gaasterland, Pascal Hingamp, Frank Holstege, Martin Ringwald, Paul T. Spellman, Christian J. Stoeckert Jr., Jason E. Stewart, Ronald Taylor, Alvis Brazma, John Quackenbush: An open letter to the scientific journals. Bioinformatics 18(11): 1409 (2002)
10Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLSusan B. Davidson, Christian J. Stoeckert Jr.: In memory of Vadim Aleksandrovich Ratner. In Silico Biology 2: 47 (2002)
9Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAmit Bahl, Brian P. Brunk, Ross L. Coppel, Jonathan Crabtree, Sharon J. Diskin, Martin J. Fraunholz, Gregory R. Grant, Dinesh Gupta, Robert L. Huestis, Jessica C. Kissinger, Philip Labo, Li Li, Shannon K. McWeeney, Arthur J. Milgram, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr.: PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished). Nucleic Acids Research 30(1): 87-90 (2002)
2001
8Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLChristian J. Stoeckert Jr., Angel D. Pizarro, Elisabetta Manduchi, M. Gibson, Brian P. Brunk, Jonathan Crabtree, Jonathan Schug, Shai Shen-Orr, G. Christian Overton: A relational schema for both array-based and SAGE gene expression experiments. Bioinformatics 17(4): 300-308 (2001)
7Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLSusan B. Davidson, Jonathan Crabtree, Brian P. Brunk, Jonathan Schug, Val Tannen, G. Christian Overton, Christian J. Stoeckert Jr.: K2/Kleisli and GUS: Experiments in integrated access to genomic data sources. IBM Systems Journal 40(2): 512-531 (2001)
2000
6Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLElisabetta Manduchi, Gregory R. Grant, Steven E. McKenzie, G. Christian Overton, Saul Surrey, Christian J. Stoeckert Jr.: Generation of patterns from gene expression data by assigning confidence to differentially expressed genes. Bioinformatics 16(8): 685-698 (2000)
5Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLSusan B. Davidson, Christian J. Stoeckert Jr.: In Memory of Chris Overton. In Silico Biology 1: 21 (2000)
1999
4Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLChristian J. Stoeckert Jr., Fidel Salas, Brian P. Brunk, G. Christian Overton: EpoDB: a prototype database for the analysis of genes expressed during vertebrate erythropoiesis. Nucleic Acids Research 27(1): 200-203 (1999)
1998
3Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLFidel Salas, Juergen Haas, Brian P. Brunk, Christian J. Stoeckert Jr., G. Christian Overton: EpoDB: a database of genes expressed during vertebrate erythropoiesis. Nucleic Acids Research 26(1): 288-289 (1998)
1996
2no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLFidel Salas, G. Christian Overton, Juergen Haas, Christian J. Stoeckert Jr.: EpoDB: An Erythropoiesis Gene Expression Database/Knowledge Base. German Conference on Bioinformatics 1996: 40-45
1Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLFidel Salas, Juergen Haas, G. Christian Overton, Christian J. Stoeckert Jr.: EpoDB: An Erythropoiesis Gene Expression Database in Progress. German Conference on Bioinformatics - Selected Papers 1996: 52-61

Coauthor Index

1Martin Aslett [28]
2Cristina Aurrecoechea [22] [25] [26] [28] [29] [31]
3Amit Bahl [9] [13] [24]
4Catherine A. Ball [11] [20] [30]
5Ana Barreto [31]
6Matthew Berriman [28]
7Ghislain Bidaut [27]
8Alvis Brazma [11] [20] [30]
9John Brestelli [21] [24] [25] [26] [28] [29] [31] [33]
10Catherine Brooksbank [11]
11Brian P. Brunk [3] [4] [7] [8] [9] [13] [24] [25] [26] [28] [29] [31] [32] [33]
12Tony Burdett [30]
13Elisabet V. Caler [31]
14Jane M. Carlton [26]
15Mark Carrington [28]
16Helen C. Causton [11] [19] [20]
17Duccio Cavalieri [11]
18Feng Chen [18]
19Ross L. Coppel [9]
20Jonathan Crabtree [7] [8] [9] [13] [14]
21Susan B. Davidson [5] [7] [10]
22Daniel P. Depledge [28]
23Sharon J. Diskin [9]
24Jennifer Dommer [24] [25] [26]
25Liju Fan [19]
26Michael H. Farkas [32]
27Anna Farne [20]
28Steve Fischer [14] [22] [24] [25] [26] [28] [29] [31] [33]
29Jennifer Fostel [19]
30Gilberto Fragoso [19]
31Martin J. Fraunholz [9] [13]
32Terry Gaasterland [11]
33Bindu Gajria [13] [24] [25] [26] [28] [29] [31]
34Laurence Game [19]
35Xin Gao [24] [25] [26] [28] [29] [31]
36Malcolm J. Gardner [28]
37M. Gibson [8]
38Alan Gingle [25] [26] [28] [29] [31]
39Hagai Ginsburg [13]
40Regina K. Gorski [21]
41Gregory R. Grant [6] [9] [13] [15] [17] [25] [26] [28] [29] [31] [32]
42Dinesh Gupta [9] [13]
43Juergen Haas [1] [2] [3]
44Omar S. Harb [25] [26] [28] [29] [31] [33]
45Todd Harris [33]
46Emma Hastings [30]
47H. He [15]
48Mark Heiges [22] [24] [25] [26] [28] [29] [31]
49Mervi Heiskanen [19]
50Christiane Hertz-Fowler [28]
51Pascal Hingamp [11]
52John B. Hogenesch [32]
53Ele Holloway [20]
54Frank Holstege [11]
55Robin Houston [28]
56Robert L. Huestis [9]
57Ela Hunt [16]
58Frank Innamorato [25] [26] [28] [29]
59John Iodice [24] [25] [26] [28] [29] [31]
60Rafael A. Irizarry [20]
61Andrew Jones [16]
62Klaus H. Kaestner [21]
63Jessica C. Kissinger [9] [13] [22] [24] [25] [26] [28] [29] [31] [33]
64Eileen Kraemer [22] [25] [26] [28] [29] [31]
65Philip Labo [9] [13]
66Nicholas F. Lahens [32]
67Li Li [9] [13] [14]
68Wei Li [25] [26] [28] [29] [31] [33]
69Junmin Liu [15] [17] [20] [21] [30]
70Flora J. Logan-Klumpler (Flora J. Logan) [28]
71Aaron J. Mackey [18] [24]
72Donald Maier [20]
73Matthew D. Mailman [13] [15]
74Elisabetta Manduchi [6] [8] [15] [21]
75Joan M. Mazzarelli [21]
76Steven E. McKenzie [6]
77Shannon K. McWeeney [9]
78Arthur J. Milgram [9] [13]
79John A. Miller [22] [25] [26] [28] [29]
80Michael Miller [20] [30]
81Max Mintz [23]
82Siddhartha Mitra [28]
83Hilary G. Morrison [26]
84Norman Morrison [19]
85Peter J. Myler [28]
86Vishal Nayak [25] [26] [28] [29] [31] [33]
87G. Christian Overton [1] [2] [3] [4] [6] [7] [8]
88Helen E. Parkinson [11] [19] [20] [30]
89David S. Pearson [13]
90Cary Pennington [25] [26] [28] [29] [31]
91Kjell Petersen [20]
92Isabelle Phan (I. Q. H. Phan) [28]
93Eric A. Pierce [32]
94Deborah F. Pinney [14] [21] [24] [25] [26] [28] [29] [31] [33]
95Brian Pitts [31]
96Angel D. Pizarro [8] [15] [16] [32]
97John Quackenbush [11] [20]
98Gowthaman Ramasamy [28]
99Tim F. Rayner [20]
100Philippa Rhodes [22]
101Martin Ringwald [11]
102Philippe Rocca-Serra [11] [19] [20]
103Matthew B. Rogers [28]
104David S. Roos [9] [13] [14] [18] [22] [24] [25] [26] [28] [29] [31] [33]
105Chris Ross [25] [26] [28] [29]
106Fidel Salas [1] [2] [3] [4]
107Susanna-Assunta Sansone [19]
108Ugis Sarkans [20]
109Jonathan Schug [7] [8] [9] [13] [21] [23] [32]
110Ravi Shankar [30]
111Shai Shen-Orr [8]
112Gavin Sherlock [11] [20] [30]
113L. David Sibley [14]
114Dhileep Sivam [28]
115Deborah F. Smith [28]
116Paul T. Spellman [11] [20]
117Rashmi Srinivasa [30]
118Ganesh Srinivasamoorthy [28] [29] [31]
119Jason E. Stajich [33]
120Jason E. Stewart [11]
121Sandhya Subramanian [28]
122Steven Sullivan [26]
123Saul Surrey [6]
124Val Tannen (Valeriu Breazu, Val Breazu-Tannen) [7]
125Ronald Taylor [11]
126Chris J. Taylor [19]
127Ryan Thibodeau [28] [29]
128Adrian Tivey [28]
129Charles Treatman [25] [26] [28] [29] [31]
130Giles Velarde [28]
131Haiming Wang [22] [24] [25] [26] [28] [29] [31]
132Zhiming Wang [22]
133Jonathan M. Wastling [16]
134Patricia L. Whetzel [13] [15] [19] [20]
135Joseph White [19] [20] [30]
136Peter White [21]
137Farrell Wymore [20]

Colors in the list of coauthors

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