| 2008 | ||
|---|---|---|
| 31 | Lana X. Garmire, David G. Garmire, Chris Benner, Pang Ko, Christopher K. Glass, Shankar Subramaniam: Peak-Finding Refinement in the Chip-SEQ Experiment. CAINE 2008: 20-25 | |
| 30 | Jayesh Pandey, Mehmet Koyutürk, Shankar Subramaniam, Ananth Grama: Functional coherence in domain interaction networks. ECCB 2008: 28-34 | |
| 29 | Brian Saunders, Stephen Lyon, Matthew Day, Brenda Riley, Emily Chenette, Shankar Subramaniam: The Molecule Pages database. Nucleic Acids Research 36(Database-Issue): 700-706 (2008) | |
| 2007 | ||
| 28 | Jayesh Pandey, Mehmet Koyutürk, Yohan Kim, Wojciech Szpankowski, Shankar Subramaniam, Ananth Grama: Functional annotation of regulatory pathways. ISMB/ECCB (Supplement of Bioinformatics) 2007: 377-386 | |
| 27 | Purnima Guda, Chittibabu Guda, Shankar Subramaniam: Reconstruction of Pathways Associated with Amino Acid Metabolism in Human Mitochondria. Genomics, Proteomics & Bioinformatics 5(3-4): 166-176 (2007) | |
| 26 | Manish Sud, Eoin Fahy, Dawn Cotter, Alex Brown, Edward A. Dennis, Christopher K. Glass, Alfred H. Merrill Jr., Robert C. Murphy, Christian R. H. Raetz, David W. Russell, Shankar Subramaniam: LMSD: LIPID MAPS structure database. Nucleic Acids Research 35(Database-Issue): 527-532 (2007) | |
| 25 | Eoin Fahy, Manish Sud, Dawn Cotter, Shankar Subramaniam: LIPID MAPS online tools for lipid research. Nucleic Acids Research 35(Web-Server-Issue): 606-612 (2007) | |
| 2006 | ||
| 24 | Jamie A. Lee, Robert S. Sinkovits, Dennis Mock, Eva L. Rab, Jennifer Cai, Peng Yang, Brian Saunders, Robert C. Hsueh, Sangdun Choi, Shankar Subramaniam, Richard H. Scheuermann: Components of the antigen processing and presentation pathway revealed by gene expression microarray analysis following B cell antigen receptor (BCR) stimulation. BMC Bioinformatics 7: 237 (2006) | |
| 23 | Yohan Kim, Mehmet Koyutürk, Umut Topkara, Ananth Grama, Shankar Subramaniam: Inferring functional information from domain co-evolution. Bioinformatics 22(1): 40-49 (2006) | |
| 22 | Mehmet Koyutürk, Yohan Kim, Umut Topkara, Shankar Subramaniam, Wojciech Szpankowski, Ananth Grama: Pairwise Alignment of Protein Interaction Networks. Journal of Computational Biology 13(2): 182-199 (2006) | |
| 21 | Mehmet Koyutürk, Yohan Kim, Shankar Subramaniam, Wojciech Szpankowski, Ananth Grama: Detecting Conserved Interaction Patterns in Biological Networks. Journal of Computational Biology 13(7): 1299-1322 (2006) | |
| 20 | Dawn Cotter, Andreia Maer, Chittibabu Guda, Brian Saunders, Shankar Subramaniam: LMPD: LIPID MAPS proteome database. Nucleic Acids Research 34(Database-Issue): 507-510 (2006) | |
| 2005 | ||
| 19 | Georgios Joannis Pappas Jr., Shankar Subramaniam: Analysis of the Effects of Multiple Sequence Alignments in Protein Secondary Structure Prediction. BSB 2005: 128-140 | |
| 18 | Shankar Subramaniam: Challenges in Biological Data Integration in the Post-genome Sequence Era. DILS 2005: 1 | |
| 17 | Chittibabu Guda, Shankar Subramaniam: TARGET: a new method for predicting protein subcellular localization in eukaryotes. Bioinformatics 21(21): 3963-3969 (2005) | |
| 16 | Albert Hsiao, Trey Ideker, Jerrold M. Olefsky, Shankar Subramaniam: VAMPIRE microarray suite: a web-based platform for the interpretation of gene expression data. Nucleic Acids Research 33(Web-Server-Issue): 627-632 (2005) | |
| 2004 | ||
| 15 | Madhusudan, Illango Vadivelu, Lothar Krause, Yuhong Ning, Stephen Lyon, Peter Morrison, Lonnie Sorrells, Ron Taussig, Shankar Subramaniam: The Laboratory Information Management System (LIMS) for Handling the Heterogeneous Data from High Throughput Experiments in the Post-Genome Sequencing Era. METMBS 2004: 98-104 | |
| 14 | Chittibabu Guda, Eoin Fahy, Shankar Subramaniam: MITOPRED: a genome-scale method for prediction of nucleus-encoded mitochondrial proteins. Bioinformatics 20(11): 1785-1794 (2004) | |
| 13 | Albert Hsiao, D. S. Worrall, Jerrold M. Olefsky, Shankar Subramaniam: Variance-modeled posterior inference of microarray data: detecting gene-expression changes in 3T3-L1 adipocytes. Bioinformatics 20(17): 3108-3127 (2004) | |
| 12 | Dawn Cotter, Purnima Guda, Eoin Fahy, Shankar Subramaniam: MitoProteome: mitochondrial protein sequence database and annotation system. Nucleic Acids Research 32(Database-Issue): 463-467 (2004) | |
| 11 | Chittibabu Guda, Purnima Guda, Eoin Fahy, Shankar Subramaniam: MITOPRED: a web server for the prediction of mitochondrial proteins. Nucleic Acids Research 32(Web-Server-Issue): 372-374 (2004) | |
| 10 | Giridhar Chukkapalli, Chittibabu Guda, Shankar Subramaniam: SledgeHMMER: a web server for batch searching the Pfam database. Nucleic Acids Research 32(Web-Server-Issue): 542-544 (2004) | |
| 2000 | ||
| 9 | See-Wing Chiu, Michael M. Clark, Shankar Subramaniam, Eric Jakobsson: Collective motion artifacts arising in long-duration molecular dynamics simulations. Journal of Computational Chemistry 21(2): 121-131 (2000) | |
| 1999 | ||
| 8 | See-Wing Chiu, Michael M. Clark, Eric Jakobsson, Shankar Subramaniam, H. Larry Scott: Application of combined Monte Carlo and molecular dynamics method to simulation of dipalmitoyl phosphatidylcholine lipid bilayer. Journal of Computational Chemistry 20(11): 1153-1164 (1999) | |
| 1996 | ||
| 7 | Shankar Subramaniam, David K. Tcheng, James M. Fenton: A Knowledge-Based Method for Protein Structure Refinement and Prediction. ISMB 1996: 218-229 | |
| 1995 | ||
| 6 | Thomas R. Ioerger, Larry A. Rendell, Shankar Subramaniam: Searching for Representations to Improve Protein Sequence Fold-Class Prediction. Machine Learning 21(1-2): 151-175 (1995) | |
| 1994 | ||
| 5 | Roberta Susnow, Clarence Schutt, Herschel Rabitz, Shankar Subramaniam: Conformational Study of Dipeptides: A Sensitivity Analysis Approach. Journal of Computational Chemistry 15(9): 947-962 (1994) | |
| 1993 | ||
| 4 | Thomas R. Ioerger, Larry A. Rendell, Shankar Subramaniam: Constructive Induction and Protein Tertiary Structure Prediction. ISMB 1993: 198-206 | |
| 3 | Yi-Wen Guu, Shankar Subramaniam: An Efficient Storage Scheme for Aligned Genetic Sequences. SAC 1993: 139-146 | |
| 1992 | ||
| 2 | Shankar Subramaniam, David K. Tcheng, K. Hu, Harish Ragavan, Larry A. Rendell: Knowledge Engineering for Protein Structure and Motifs: Design of a Prototype System. SEKE 1992: 420-435 | |
| 1 | David K. Tcheng, Shankar Subramaniam: Machine Approaches to Protein Feature Prediction. Int. J. Neural Syst. 3(Supplement): 183-193 (1992) | |