 | 2009 |
| 21 |  | Tamir Tuller,
Hadas Birin,
Martin Kupiec,
Eytan Ruppin:
Co-evolutionary Models for Reconstructing Ancestral Genomic Sequences: Computational Issues and Biological Examples.
RECOMB-CG 2009: 164-180 |
| 20 |  | Guohua Jin,
Luay Nakhleh,
Sagi Snir,
Tamir Tuller:
Parsimony Score of Phylogenetic Networks: Hardness Results and a Linear-Time Heuristic.
IEEE/ACM Trans. Comput. Biology Bioinform. 6(3): 495-505 (2009) |
| 19 |  | Sagi Snir,
Tamir Tuller:
The Net-HMM Approach: Phylogenetic Network Inference by Combining Maximum Likelihood and Hidden Markov Models.
J. Bioinformatics and Computational Biology 7(4): 625-644 (2009) |
| 2008 |
| 18 |  | Yifat Felder,
Tamir Tuller:
Discovering Local Patterns of Co-evolution.
RECOMB-CG 2008: 55-71 |
| 17 |  | Sagi Snir,
Tamir Tuller:
Novel Phylogenetic Network Inference by Combining Maximum Likelihood and Hidden Markov Models.
WABI 2008: 354-368 |
| 16 |  | Hadas Birin,
Zohar Gal-Or,
Isaac Elias,
Tamir Tuller:
Inferring horizontal transfers in the presence of rearrangements by the minimum evolution criterion.
Bioinformatics 24(6): 826-832 (2008) |
| 2007 |
| 15 |  | Guohua Jin,
Luay Nakhleh,
Sagi Snir,
Tamir Tuller:
A New Linear-Time Heuristic Algorithm for Computing the Parsimony Score of Phylogenetic Networks: Theoretical Bounds and Empirical Performance.
ISBRA 2007: 61-72 |
| 14 |  | Hadas Birin,
Zohar Gal-Or,
Isaac Elias,
Tamir Tuller:
Inferring Models of Rearrangements, Recombinations, and Horizontal Transfers by the Minimum Evolution Criterion.
WABI 2007: 111-123 |
| 13 |  | Guohua Jin,
Luay Nakhleh,
Sagi Snir,
Tamir Tuller:
Efficient parsimony-based methods for phylogenetic network reconstruction.
Bioinformatics 23(2): 123-128 (2007) |
| 12 |  | Guohua Jin,
Luay Nakhleh,
Sagi Snir,
Tamir Tuller:
Maximum likelihood of phylogenetic networks.
Bioinformatics 23(8): 1046-1047 (2007) |
| 11 |  | Isaac Elias,
Tamir Tuller:
Reconstruction of Ancestral Genomic Sequences Using Likelihood.
Journal of Computational Biology 14(2): 216-237 (2007) |
| 10 |  | Benny Chor,
Tamir Tuller:
Biological Networks: Comparison, Conservation, and Evolution via Relative Description Length.
Journal of Computational Biology 14(6): 817-838 (2007) |
| 2006 |
| 9 |  | Benny Chor,
Tamir Tuller:
Biological Networks: Comparison, Conservation, and Evolutionary Trees.
RECOMB 2006: 30-44 |
| 8 |  | Guohua Jin,
Luay Nakhleh,
Sagi Snir,
Tamir Tuller:
Maximum likelihood of phylogenetic networks.
Bioinformatics 22(21): 2604-2611 (2006) |
| 7 |  | Benny Chor,
Tamir Tuller:
Finding a maximum likelihood tree is hard.
J. ACM 53(5): 722-744 (2006) |
| 6 |  | Igor Ulitsky,
David Burstein,
Tamir Tuller,
Benny Chor:
The Average Common Substring Approach to Phylogenomic Reconstruction.
Journal of Computational Biology 13(2): 336-350 (2006) |
| 2005 |
| 5 |  | Benny Chor,
Tamir Tuller:
Maximum likelihood of evolutionary trees: hardness and approximation.
ISMB (Supplement of Bioinformatics) 2005: 97-106 |
| 4 |  | David Burstein,
Igor Ulitsky,
Tamir Tuller,
Benny Chor:
Information Theoretic Approaches to Whole Genome Phylogenies.
RECOMB 2005: 283-295 |
| 3 |  | Benny Chor,
Tamir Tuller:
Maximum Likelihood of Evolutionary Trees Is Hard.
RECOMB 2005: 296-310 |
| 2 |  | Tamir Tuller,
Efrat Oron,
Erez Makavy,
Daniel A. Chamovitz,
Benny Chor:
Time-Window Analysis of Developmental Gene Expression Data with Multiple Genetic Backgrounds.
WABI 2005: 53-64 |
| 2004 |
| 1 |  | Benny Chor,
Tamir Tuller:
Adding Hidden Nodes to Gene Networks (Extended Abstract).
WABI 2004: 123-134 |