Chris Upton

	2009
15		Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upton: Suffix trees for very large genomic sequences. CIKM 2009: 1417-1420
	2008
14		Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upton: A new method for indexing genomes using on-disk suffix trees. CIKM 2008: 649-658
13		Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upton: A graph approach to the threshold all-against-all substring matching problem. ACM Journal of Experimental Algorithmics 12: (2008)
	2007
12		Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upton: Shortest Path Approaches for the Longest Common Subsequence of a Set of Strings. BIBE 2007: 327-333
11		Jamie M. Thomas, Daniel Horspool, Gordon Brown, Vasily Tcherepanov, Chris Upton: GraphDNA: a Java program for graphical display of DNA composition analyses. BMC Bioinformatics 8: (2007)
	2006
10		Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upton: A New Algorithm for Fast All-Against-All Substring Matching. SPIRE 2006: 360-366
9		Aijazuddin Syed, Chris Upton: Java GUI for InterProScan (JIPS): A tool to help process multiple InterProScans and perform ortholog analysis. BMC Bioinformatics 7: 462 (2006)
8		Melissa Da Silva, Ling Shen, Vasily Tcherepanov, Cristalle Watson, Chris Upton: Predicted function of the vaccinia virus G5R protein. Bioinformatics 22(23): 2846-2850 (2006)
	2005
7		Joe Whitney, David J. Esteban, Chris Upton: Recent Hits Acquired by BLAST (ReHAB): A tool to identify new hits in sequence similarity searches. BMC Bioinformatics 6: 23 (2005)
6		Elliot J. Lefkowitz, Chris Upton, Shankar S. Changayil, Charles Buck, Paula Traktman, R. Mark L. Buller: Poxvirus Bioinformatics Resource Center: a comprehensive Poxviridae informational and analytical resource. Nucleic Acids Research 33(Database-Issue): 311-316 (2005)
	2004
5		Ryan Brodie, Alex J. Smith, Rachel L. Roper, Vasily Tcherepanov, Chris Upton: Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments. BMC Bioinformatics 5: 96 (2004)
4		Ryan Brodie, Rachel L. Roper, Chris Upton: JDotter: a Java interface to multiple dotplots generated by dotter. Bioinformatics 20(2): 279-281 (2004)
	2002
3		Angelika Ehlers, John Osborne, Stephanie Slack, Rachel L. Roper, Chris Upton: Poxvirus Orthologous Clusters (POCs). Bioinformatics 18(11): 1544-1545 (2002)
	2000
2		Matthew Boone, Chris Upton: BLAST Search Updater: a notification system for new database matches. Bioinformatics 16(11): 1054-1055 (2000)
1		David Hiscock, Chris Upton: Viral Genome DataBase: storing and analyzing genes and proteins from complete viral genomes. Bioinformatics 16(5): 484-485 (2000)

Coauthor Index

1	Marina Barsky	[10] [12] [13] [14] [15]
2	Matthew Boone	[2]
3	Ryan Brodie	[4] [5]
4	Gordon Brown	[11]
5	Charles Buck	[6]
6	R. Mark L. Buller	[6]
7	Shankar S. Changayil	[6]
8	Angelika Ehlers	[3]
9	David J. Esteban	[7]
10	David Hiscock	[1]
11	Daniel Horspool	[11]
12	Elliot J. Lefkowitz	[6]
13	John Osborne	[3]
14	Rachel L. Roper	[3] [4] [5]
15	Ling Shen	[8]
16	Melissa Da Silva	[8]
17	Stephanie Slack	[3]
18	Alex J. Smith	[5]
19	Ulrike Stege	[10] [12] [13] [14] [15]
20	Aijazuddin Syed	[9]
21	Vasily Tcherepanov	[5] [8] [11]
22	Jamie M. Thomas	[11]
23	Alex Thomo	[10] [12] [13] [14] [15]
24	Paula Traktman	[6]
25	Cristalle Watson	[8]
26	Joe Whitney	[7]

Colors in the list of coauthors