Jean-Philippe Vert

	2009
46		Laurent Jacob, Guillaume Obozinski, Jean-Philippe Vert: Group lasso with overlap and graph lasso. ICML 2009: 55
45		Mikhail Zaslavskiy, Francis R. Bach, Jean-Philippe Vert: Global alignment of protein-protein interaction networks by graph matching methods. Bioinformatics 25(12): (2009)
	2008
44		Fantine Mordelet, Jean-Philippe Vert: SIRENE: supervised inference of regulatory networks. ECCB 2008: 76-82
43		Mikhail Zaslavskiy, Francis Bach, Jean-Philippe Vert: A Path Following Algorithm for Graph Matching. ICISP 2008: 329-337
42		Franck Rapaport, Emmanuel Barillot, Jean-Philippe Vert: Classification of arrayCGH data using fused SVM. ISMB 2008: 375-382
41		Laurent Jacob, Francis Bach, Jean-Philippe Vert: Clustered Multi-Task Learning: A Convex Formulation. NIPS 2008: 745-752
40		Tomoko Matsui, Jean-Philippe Vert, Shin'ichi Satoh, Yuji Uchiyama: ISM TRECVID2008 High-level Feature Extraction. TRECVID 2008
39		Laurent Jacob, Brice Hoffmann, Véronique Stoven, Jean-Philippe Vert: Virtual screening of GPCRs: An in silico chemogenomics approach. BMC Bioinformatics 9: (2008)
38		Laurent Jacob, Jean-Philippe Vert: Protein-ligand interaction prediction: an improved chemogenomics approach. Bioinformatics 24(19): 2149-2156 (2008)
37		Laurent Jacob, Jean-Philippe Vert: Efficient peptide-MHC-I binding prediction for alleles with few known binders. Bioinformatics 24(3): 358-366 (2008)
36		Mikhail Zaslavskiy, Francis Bach, Jean-Philippe Vert: Path following algorithm for the graph matching problem CoRR abs/0801.3654: (2008)
35		Jean-Philippe Vert: The optimal assignment kernel is not positive definite CoRR abs/0801.4061: (2008)
34		Francis Bach, Jacob Abernethy, Jean-Philippe Vert, Theodoros Evgeniou: A New Approach to Collaborative Filtering: Operator Estimation with Spectral Regularization CoRR abs/0802.1430: (2008)
33		Laurent Jacob, Francis Bach, Jean-Philippe Vert: Clustered Multi-Task Learning: A Convex Formulation CoRR abs/0809.2085: (2008)
32		Jacob Abernethy, Theodoros Evgeniou, Olivier Toubia, Jean-Philippe Vert: Eliciting Consumer Preferences Using Robust Adaptive Choice Questionnaires. IEEE Trans. Knowl. Data Eng. 20(2): 145-155 (2008)
	2007
31		Kevin Bleakley, Gérard Biau, Jean-Philippe Vert: Supervised reconstruction of biological networks with local models. ISMB/ECCB (Supplement of Bioinformatics) 2007: 57-65
30		Jean-Philippe Vert, Jian Qiu, William Stafford Noble: A new pairwise kernel for biological network inference with support vector machines. BMC Bioinformatics 8(S-10): (2007)
29		Franck Rapaport, Andrei Zinovyev, Marie Dutreix, Emmanuel Barillot, Jean-Philippe Vert: Classification of microarray data using gene networks. BMC Bioinformatics 8: (2007)
28		Yoshihiro Yamanishi, Francis Bach, Jean-Philippe Vert: Glycan classification with tree kernels. Bioinformatics 23(10): 1211-1216 (2007)
27		Jian Qiu, Martial Hue, Asa Ben-Hur, Jean-Philippe Vert, William Stafford Noble: A structural alignment kernel for protein structures. Bioinformatics 23(9): 1090-1098 (2007)
26		Pierre Mahé, Jean-Philippe Vert: Virtual screening with support vector machines and structure kernels CoRR abs/0708.0171: (2007)
	2006
25		Jean-Philippe Vert: Classification of Biological Sequences with Kernel Methods. ICGI 2006: 7-18
24		Hiroto Saigo, Jean-Philippe Vert, Tatsuya Akutsu: Optimizing amino acid substitution matrices with a local alignment kernel. BMC Bioinformatics 7: 246 (2006)
23		Jean-Philippe Vert, Nicolas Foveau, Christian Lajaunie, Yves Vandenbrouck: An accurate and interpretable model for siRNA efficacy prediction. BMC Bioinformatics 7: 520 (2006)
22		Marco Cuturi, Jean-Philippe Vert, Oystein Birkenes, Tomoko Matsui: A kernel for time series based on global alignments CoRR abs/cs/0610033: (2006)
21		Jacob Abernethy, Francis Bach, Theodoros Evgeniou, Jean-Philippe Vert: Low-rank matrix factorization with attributes CoRR abs/cs/0611124: (2006)
20		Jean-Philippe Vert, Jian Qiu, William Stafford Noble: Metric learning pairwise kernel for graph inference CoRR abs/q-bio/0610040: (2006)
19		Régis Vert, Jean-Philippe Vert: Consistency and Convergence Rates of One-Class SVMs and Related Algorithms. Journal of Machine Learning Research 7: 817-854 (2006)
	2005
18		Yoshihiro Yamanishi, Jean-Philippe Vert, Minoru Kanehisa: Supervised enzyme network inference from the integration of genomic data and chemical information. ISMB (Supplement of Bioinformatics) 2005: 468-477
17		Régis Vert, Jean-Philippe Vert: Consistency of one-class SVM and related algorithms. NIPS 2005
16		Jean-Philippe Vert, Robert Thurman, William Stafford Noble: Kernels for gene regulatory regions. NIPS 2005
15		Pierre Mahé, Nobuhisa Ueda, Tatsuya Akutsu, Jean-Luc Perret, Jean-Philippe Vert: Graph Kernels for Molecular Structure-Activity Relationship Analysis with Support Vector Machines. Journal of Chemical Information and Modeling 45(4): 939-951 (2005)
14		Marco Cuturi, Kenji Fukumizu, Jean-Philippe Vert: Semigroup Kernels on Measures. Journal of Machine Learning Research 6: 1169-1198 (2005)
13		Marco Cuturi, Jean-Philippe Vert: The context-tree kernel for strings. Neural Networks 18(8): 1111-1123 (2005)
	2004
12		Pierre Mahé, Nobuhisa Ueda, Tatsuya Akutsu, Jean-Luc Perret, Jean-Philippe Vert: Extensions of marginalized graph kernels. ICML 2004
11		Yoshihiro Yamanishi, Jean-Philippe Vert, Minoru Kanehisa: Protein network inference from multiple genomic data: a supervised approach. ISMB/ECCB (Supplement of Bioinformatics) 2004: 363-370
10		Marco Cuturi, Jean-Philippe Vert: Semigroup Kernels on Finite Sets. NIPS 2004
9		Jean-Philippe Vert, Yoshihiro Yamanishi: Supervised Graph Inference. NIPS 2004
8		Hiroto Saigo, Jean-Philippe Vert, Nobuhisa Ueda, Tatsuya Akutsu: Protein homology detection using string alignment kernels. Bioinformatics 20(11): 1682-1689 (2004)
	2003
7		Jean-Philippe Vert, Minoru Kanehisa: Extracting active pathways from gene expression data. ECCB 2003: 238-244
6		Yoshihiro Yamanishi, Jean-Philippe Vert, A. Nakaya, Minoru Kanehisa: Extraction of correlated gene clusters from multiple genomic data by generalized kernel canonical correlation analysis. ISMB (Supplement of Bioinformatics) 2003: 323-330
	2002
5		Jean-Philippe Vert: A tree kernel to analyse phylogenetic profiles. ISMB 2002: 276-284
4		Jean-Philippe Vert, Minoru Kanehisa: Graph-Driven Feature Extraction From Microarray Data Using Diffusion Kernels and Kernel CCA. NIPS 2002: 1425-1432
3		Jean-Philippe Vert: Support Vector Machine Prediction of Signal Peptide Cleavage Site Using a New Class of Kernels for Strings. Pacific Symposium on Biocomputing 2002: 649-660
	2001
2		Jean-Philippe Vert: Text Categorization Using Adaptive Context Trees. CICLing 2001: 423-436
1		Jean-Philippe Vert: Adaptive context trees and text clustering. IEEE Transactions on Information Theory 47(5): 1884-1901 (2001)

Coauthor Index

1	Jacob Abernethy	[21] [32] [34]
2	Tatsuya Akutsu	[8] [12] [15] [24]
3	Francis R. Bach (Francis Bach)	[21] [28] [33] [34] [36] [41] [43] [45]
4	Emmanuel Barillot	[29] [42]
5	Asa Ben-Hur	[27]
6	Gérard Biau	[31]
7	Oystein Birkenes	[22]
8	Kevin Bleakley	[31]
9	Marco Cuturi	[10] [13] [14] [22]
10	Marie Dutreix	[29]
11	Theodoros Evgeniou	[21] [32] [34]
12	Nicolas Foveau	[23]
13	Kenji Fukumizu	[14]
14	Brice Hoffmann	[39]
15	Martial Hue	[27]
16	Laurent Jacob	[33] [37] [38] [39] [41] [46]
17	Minoru Kanehisa	[4] [6] [7] [11] [18]
18	Christian Lajaunie	[23]
19	Pierre Mahé	[12] [15] [26]
20	Tomoko Matsui	[22] [40]
21	Fantine Mordelet	[44]
22	A. Nakaya	[6]
23	William Stafford Noble	[16] [20] [27] [30]
24	Guillaume Obozinski	[46]
25	Jean-Luc Perret	[12] [15]
26	Jian Qiu	[20] [27] [30]
27	Franck Rapaport	[29] [42]
28	Hiroto Saigo	[8] [24]
29	Shin'ichi Satoh	[40]
30	Véronique Stoven	[39]
31	Robert Thurman	[16]
32	Olivier Toubia	[32]
33	Yuji Uchiyama	[40]
34	Nobuhisa Ueda	[8] [12] [15]
35	Yves Vandenbrouck	[23]
36	Régis Vert	[17] [19]
37	Yoshihiro Yamanishi	[6] [9] [11] [18] [28]
38	Mikhail Zaslavskiy	[36] [43] [45]
39	Andrei Zinovyev	[29]

Colors in the list of coauthors