Tandy Warnow

	2009
85		Steven Salzberg, Tandy Warnow: Algorithms in Bioinformatics, 9th International Workshop, WABI 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings Springer 2009
84		M. Shel Swenson, François Barbançon, C. Randal Linder, Tandy Warnow: A Simulation Study Comparing Supertree and Combined Analysis Methods Using SMIDGen. WABI 2009: 333-344
83		Kevin Liu, Serita M. Nelesen, Sindhu Raghavan, C. Randal Linder, Tandy Warnow: Barking Up The Wrong Treelength: The Impact of Gap Penalty on Alignment and Tree Accuracy. IEEE/ACM Trans. Comput. Biology Bioinform. 6(1): 7-21 (2009)
	2008
82		Michael Brudno, Bernard M. E. Moret, C. Randal Linder, Tandy Warnow: Session Introduction. Pacific Symposium on Biocomputing 2008: 1-2
81		Serita M. Nelesen, Kevin Liu, D. Zhao, C. Randal Linder, Tandy Warnow: The Effect of the Guide Tree on Multiple Sequence Alignments and Subsequent Phylogenetic Analysis. Pacific Symposium on Biocomputing 2008: 25-36
80		Sagi Snir, Tandy Warnow, Satish Rao: Short Quartet Puzzling: A New Quartet-Based Phylogeny Reconstruction Algorithm. Journal of Computational Biology 15(1): 91-103 (2008)
	2006
79		Ganeshkumar Ganapathy, Barbara Goodson, Robert K. Jansen, Hai-son Le, Vijaya Ramachandran, Tandy Warnow: Pattern Identification in Biogeography. IEEE/ACM Trans. Comput. Biology Bioinform. 3(4): 334-346 (2006)
78		Li-San Wang, Tandy Warnow: Reconstructing Chromosomal Evolution. SIAM J. Comput. 36(1): 99-131 (2006)
	2005
77		Ganeshkumar Ganapathy, Barbara Goodson, Robert K. Jansen, Vijaya Ramachandran, Tandy Warnow: Pattern Identification in Biogeography. WABI 2005: 116-127
76		Luay Nakhleh, Tandy Warnow, C. Randal Linder, Katherine St. John: Reconstructing Reticulate Evolution in SpeciesTheory and Practice. Journal of Computational Biology 12(6): 796-811 (2005)
	2004
75		Usman Roshan, Bernard M. E. Moret, Tandy Warnow, Tiffani L. Williams: Rec-I-DCM3: A Fast Algorithmic Technique for Reconstructing Large Phylogenetic Trees. CSB 2004: 98-109
74		Luay Nakhleh, Tandy Warnow, C. Randal Linder: Reconstructing reticulate evolution in species: theory and practice. RECOMB 2004: 337-346
73		Ganeshkumar Ganapathy, Vijaya Ramachandran, Tandy Warnow: On contract-and-refine transformations between phylogenetic trees. SODA 2004: 900-909
72		Bernard M. E. Moret, Luay Nakhleh, Tandy Warnow, C. Randal Linder, Anna Tholse, Anneke Padolina, Jerry Sun, Ruth E. Timme: Phylogenetic Networks: Modeling, Reconstructibility, and Accuracy. IEEE/ACM Trans. Comput. Biology Bioinform. 1(1): 13-23 (2004)
71		Steven N. Evans, Tandy Warnow: Unidentifiable Divergence Times in Rates-across-Sites Models. IEEE/ACM Trans. Comput. Biology Bioinform. 1(3): 130-134 (2004)
70		Tandy Warnow, Binhai Zhu: Preface. Theor. Comput. Sci. 325(3): 345-346 (2004)
	2003
69		Tandy Warnow, Binhai Zhu: Computing and Combinatorics, 9th Annual International Conference, COCOON 2003, Big Sky, MT, USA, July 25-28, 2003, Proceedings Springer 2003
68		Luay Nakhleh, Jerry Sun, Tandy Warnow, C. Randal Linder, Bernard M. E. Moret, Anna Tholse: Towards the Development of Computational Tools for Evaluating Phylogenetic Network Reconstruction Methods. Pacific Symposium on Biocomputing 2003: 315-326
67		Ganeshkumar Ganapathy, Vijaya Ramachandran, Tandy Warnow: Better Hill-Climbing Searches for Parsimony. WABI 2003: 245-258
66		Katherine St. John, Tandy Warnow, Bernard M. E. Moret, Lisa Vawter: Performance study of phylogenetic methods: (unweighted) quartet methods and neighbor-joining. J. Algorithms 48(1): 173-193 (2003)
	2002
65		Ganeshkumar Ganapathy, Tandy Warnow: Approximating the Complement of the Maximum Compatible Subset of Leaves of k Trees. APPROX 2002: 122-134
64		Cara Stockham, Li-San Wang, Tandy Warnow: Statistically based postprocessing of phylogenetic analysis by clustering. ISMB 2002: 285-293
63		Luay Nakhleh, Bernard M. E. Moret, Usman Roshan, Katherine St. John, Jerry Sun, Tandy Warnow: The Accuracy of Fast Phylogenetic Methods for Large Datasets. Pacific Symposium on Biocomputing 2002: 211-222
62		Li-San Wang, Robert K. Jansen, Bernard M. E. Moret, Linda A. Raubeson, Tandy Warnow: Fast Phylogenetic Methods for the Analysis of Genome Rearrangement Data: An Empirical Study. Pacific Symposium on Biocomputing 2002: 524-535
61		Luay Nakhleh, Usman Roshan, Lisa Vawter, Tandy Warnow: Estimating the Deviation from a Molecular Clock. WABI 2002: 287-299
60		Bernard M. E. Moret, Usman Roshan, Tandy Warnow: Sequence-Length Requirements for Phylogenetic Methods. WABI 2002: 343-356
59		Bernard M. E. Moret, Li-San Wang, Tandy Warnow: Toward New Software for Computational Phylogenetics. IEEE Computer 35(7): 55-64 (2002)
58		Bernard M. E. Moret, Jijun Tang, Li-San Wang, Tandy Warnow: Steps toward accurate reconstructions of phylogenies from gene-order data. J. Comput. Syst. Sci. 65(3): 508-525 (2002)
57		Bernard M. E. Moret, David A. Bader, Tandy Warnow: High-Performance Algorithm Engineering for Computational Phylogenetics. The Journal of Supercomputing 22(1): 99-111 (2002)
	2001
56		Bernard M. E. Moret, Li-San Wang, Tandy Warnow, Stacia K. Wyman: New approaches for reconstructing phylogenies from gene order data. ISMB (Supplement of Bioinformatics) 2001: 165-173
55		Luay Nakhleh, Usman Roshan, Katherine St. John, Jerry Sun, Tandy Warnow: Designing fast converging phylogenetic methods. ISMB (Supplement of Bioinformatics) 2001: 190-198
54		Bernard M. E. Moret, David A. Bader, Tandy Warnow: High-Performance Algorithm Engineering for Computational Phylogenetics. International Conference on Computational Science (2) 2001: 1012-1021
53		Bernard M. E. Moret, Stacia K. Wyman, David A. Bader, Tandy Warnow, Mi Yan: A New Implmentation and Detailed Study of Breakpoint Analysis. Pacific Symposium on Biocomputing 2001: 583-594
52		Tandy Warnow, Bernard M. E. Moret, Katherine St. John: Absolute convergence: true trees from short sequences. SODA 2001: 186-195
51		Katherine St. John, Tandy Warnow, Bernard M. E. Moret, Lisa Vawter: Performance study of phylogenetic methods: (unweighted) quartet methods and neighbor-joining. SODA 2001: 196-205
50		Li-San Wang, Tandy Warnow: Estimating true evolutionary distances between genomes. STOC 2001: 637-646
49		Ganeshkumar Ganapathysaravanabavan, Tandy Warnow: Finding a Maximum Compatible Tree for a Bounded Number of Trees with Bounded Degree Is Solvable in Polynomial Time. WABI 2001: 156-163
48		Luay Nakhleh, Usman Roshan, Katherine St. John, Jerry Sun, Tandy Warnow: The Performance of Phylogenetic Methods on Trees of Bounded Diameter. WABI 2001: 214-226
	2000
47		Bernard M. E. Moret, Tandy Warnow: Reconstructing Optimal Phylogenetic Trees: A Challenge in Experimental Algorithmics. Experimental Algorithmics 2000: 163-180
46		Mary E. Cosner, Robert K. Jansen, Bernard M. E. Moret, Linda A. Raubeson, Li-San Wang, Tandy Warnow, Stacia K. Wyman: A New Fast Heuristic for Computing the Breakpoint Phylogeny and Experimental Phylogenetic Analyses of Real and Synthetic Data. ISMB 2000: 104-115
45		Hans L. Bodlaender, Michael R. Fellows, Michael T. Hallett, Todd Wareham, Tandy Warnow: The hardness of perfect phylogeny, feasible register assignment and other problems on thin colored graphs. Theor. Comput. Sci. 244(1-2): 167-188 (2000)
	1999
44		Daniel H. Huson, Kelly Ann Smith, Tandy Warnow: Estimating Large Distances in Phylogenetic Reconstruction. Algorithm Engineering 1999: 272-286
43		Daniel H. Huson, Lisa Vawter, Tandy Warnow: Solving Large Scale Phylogenetic Problems using DCM2. ISMB 1999: 118-129
42		Daniel H. Huson, Scott Nettles, Tandy Warnow: Obtaining highly accurate topology estimates of evolutionary trees from very short sequences. RECOMB 1999: 198-207
41		Daniel H. Huson, Scott Nettles, Kenneth Rice, Tandy Warnow, Shibu Yooseph: Hybrid Tree Reconstruction Methods. ACM Journal of Experimental Algorithmics 4: 5 (1999)
40		Monika Rauch Henzinger, Valerie King, Tandy Warnow: Constructing a Tree from Homeomorphic Subtrees, with Applications to Computational Evolutionary Biology. Algorithmica 24(1): 1-13 (1999)
39		Daniel H. Huson, Scott Nettles, Tandy Warnow: Disk-Covering, a Fast-Converging Method for Phylogenetic Tree Reconstruction. Journal of Computational Biology 6(3/4): (1999)
38		Péter L. Erdös, Michael Anthony Steel, László A. Székely, Tandy Warnow: A few logs suffice to build (almost) all trees (I). Random Struct. Algorithms 14(2): 153-184 (1999)
37		Maria Luisa Bonet, Cynthia A. Phillips, Tandy Warnow, Shibu Yooseph: Constructing Evolutionary Trees in the Presence of Polymorphic Characters. SIAM J. Comput. 29(1): 103-131 (1999)
36		Péter L. Erdös, Michael Anthony Steel, László A. Székely, Tandy Warnow: A Few Logs Suffice to Build (almost) All Trees: Part II. Theor. Comput. Sci. 221(1-2): 77-118 (1999)
	1998
35		Daniel H. Huson, Scott Nettles, Kenneth Rice, Tandy Warnow, Shibu Yooseph: Hybrid Tree Reconstruction Methods. Algorithm Engineering 1998: 179-192
34		Maria Luisa Bonet, Mike A. Steel, Tandy Warnow, Shibu Yooseph: Better methods for solving parsimony and compatibility. RECOMB 1998: 40-49
33		Maria Luisa Bonet, Mike A. Steel, Tandy Warnow, Shibu Yooseph: Better Methods for Solving Parsimony and Compatibility. Journal of Computational Biology 5(3): 391-408 (1998)
32		Sampath Kannan, Tandy Warnow: Computing the Local Consensus of Trees. SIAM J. Comput. 27(6): 1695-1724 (1998)
	1997
31		Kenneth Rice, Tandy Warnow: Parsimony is Hard to Beat. COCOON 1997: 124-133
30		Péter L. Erdös, Mike A. Steel, László A. Székely, Tandy Warnow: Constructing Big Trees from Short Sequences. ICALP 1997: 827-837
29		Péter L. Erdös, Mike A. Steel, László A. Székely, Tandy Warnow: Local Quartet Splits of a Binary Tree Infer All Quartet Splits Via One Dyadic Inference Rule. Computers and Artificial Intelligence 16(2): (1997)
28		Sampath Kannan, Tandy Warnow: A Fast Algorithm for the Computation and Enumeration of Perfect Phylogenies. SIAM J. Comput. 26(6): 1749-1763 (1997)
	1996
27		Cynthia A. Phillips, Tandy Warnow: The Asymmetric Median Tree - A New model for Building Consensus Trees. CPM 1996: 234-252
26		Tandy Warnow, Donald Ringe, Ann Taylor: Reconstructing the Evolutionary History of Natural Languages. SODA 1996: 314-322
25		Monika Rauch Henzinger, Valerie King, Tandy Warnow: Constructing a Tree from Homeomorphic Subtrees, with Applications to Computational Evolutionary Biology. SODA 1996: 333-340
24		Maria Luisa Bonet, Cynthia A. Phillips, Tandy Warnow, Shibu Yooseph: Constructing Evolutionary Trees in the Presence of Polymorphic Characters. STOC 1996: 220-229
23		Leslie Ann Goldberg, Paul W. Goldberg, Cynthia A. Phillips, Elizabeth Sweedyk, Tandy Warnow: Minimizing Phylogenetic Number To Find Good Evolutionary Trees. Discrete Applied Mathematics 71(1-3): 111-136 (1996)
22		Cynthia A. Phillips, Tandy Warnow: The Asymmetric Median Tree - A New Model for Building Consensus Trees. Discrete Applied Mathematics 71(1-3): 311-335 (1996)
21		Sampath Kannan, Eugene L. Lawler, Tandy Warnow: Determining the Evolutionary Tree Using Experiments. J. Algorithms 21(1): 26-50 (1996)
	1995
20		Leslie Ann Goldberg, Paul W. Goldberg, Cynthia A. Phillips, Elizabeth Sweedyk, Tandy Warnow: Minimizing Phylogenetic Number to find Good Evolutionary Trees. CPM 1995: 102-127
19		Craig J. Benham, Sampath Kannan, Tandy Warnow: Of Chicken Teeth and Mouse Eyes, or Generalized Character Compatibility. CPM 1995: 17-26
18		Sampath Kannan, Tandy Warnow: A Fast Algorithm for the Computation and Enumeration of Perfect Phylogenies when the Number of Character States is Fixed. SODA 1995: 595-603
17		Sampath Kannan, Tandy Warnow, Shibu Yooseph: Computing the Local Consensus of Trees. SODA 1995: 68-77
16		Martin Farach, Sampath Kannan, Tandy Warnow: A Robust Model for Finding Optimal Evolutionary Trees. Algorithmica 13(1/2): 155-179 (1995)
15		Craig J. Benham, Sampath Kannan, Michael Paterson, Tandy Warnow: Hen's Teeth and Whale's Feet: Generalized Characters and Their Compatibility. Journal of Computational Biology 2(4): 515-525 (1995)
14		Sampath Kannan, Tandy Warnow: Tree Reconstruction from Partial Orders. SIAM J. Comput. 24(3): 511-519 (1995)
	1994
13		Tandy Warnow: Tree Compatibility and Inferring Evolutionary History. J. Algorithms 16(3): 388-407 (1994)
12		Sampath Kannan, Tandy Warnow: Inferring Evolutionary History from DNA Sequences. SIAM J. Comput. 23(4): 713-737 (1994)
11		Fred R. McMorris, Tandy Warnow, Thomas Wimer: Triangulating Vertex-Colored Graphs. SIAM J. Discrete Math. 7(2): 296-306 (1994)
	1993
10		Fred R. McMorris, Tandy Warnow, Thomas Wimer: Triangulating Vertex Colored Graphs. SODA 1993: 120-127
9		Tandy Warnow: Tree Compatibility and Inferring Evoluationary History. SODA 1993: 382-391
8		Martin Farach, Sampath Kannan, Tandy Warnow: A robust model for finding optimal evolutionary trees. STOC 1993: 137-145
7		Sampath Kannan, Tandy Warnow: Tree Reconstruction from Partial Orders. WADS 1993: 397-408
6		Mike A. Steel, Tandy Warnow: Kaikoura Tree Theorems: Computing the Maximum Agreement Subtree. Inf. Process. Lett. 48(2): 77-82 (1993)
	1992
5		Hans L. Bodlaender, Michael R. Fellows, Tandy Warnow: Two Strikes Against Perfect Phylogeny. ICALP 1992: 273-283
4		Sampath Kannan, Tandy Warnow: Triangulating 3-Colored Graphs. SIAM J. Discrete Math. 5(2): 249-258 (1992)
	1991
3		Sampath Kannan, Tandy Warnow: Triangulating Three-Colored Graphs. SODA 1991: 337-343
	1990
2		Sampath Kannan, Tandy Warnow: Inferring Evolutionary History from DNA Sequences (Extended Abstract) FOCS 1990: 362-371
1		Sampath Kannan, Eugene L. Lawler, Tandy Warnow: Determining the Evolutionary Tree. SODA 1990: 475-484

Coauthor Index

1	David A. Bader	[53] [54] [57]
2	François Barbançon	[84]
3	Craig J. Benham	[15] [19]
4	Hans L. Bodlaender	[5] [45]
5	Maria Luisa Bonet	[24] [33] [34] [37]
6	Michael Brudno	[82]
7	Mary E. Cosner	[46]
8	Péter L. Erdös	[29] [30] [36] [38]
9	Steven N. Evans	[71]
10	Martin Farach-Colton (Martin Farach)	[8] [16]
11	Michael R. Fellows (Mike Fellows)	[5] [45]
12	Ganeshkumar Ganapathy	[65] [67] [73] [77] [79]
13	Ganeshkumar Ganapathysaravanabavan	[49]
14	Leslie Ann Goldberg	[20] [23]
15	Paul W. Goldberg	[20] [23]
16	Barbara Goodson	[77] [79]
17	Michael T. Hallett	[45]
18	Monika Rauch Henzinger (Monika Rauch)	[25] [40]
19	Daniel H. Huson	[35] [39] [41] [42] [43] [44]
20	Robert K. Jansen	[46] [62] [77] [79]
21	Katherine St. John	[48] [51] [52] [55] [63] [66] [76]
22	Sampath Kannan	[1] [2] [3] [4] [7] [8] [12] [14] [15] [16] [17] [18] [19] [21] [28] [32]
23	Valerie King	[25] [40]
24	Eugene L. Lawler	[1] [21]
25	Hai-son Le	[79]
26	C. Randal Linder	[68] [72] [74] [76] [81] [82] [83] [84]
27	Kevin Liu	[81] [83]
28	Fred R. McMorris	[10] [11]
29	Bernard M. E. Moret	[46] [47] [51] [52] [53] [54] [56] [57] [58] [59] [60] [62] [63] [66] [68] [72] [75] [82]
30	Luay Nakhleh	[48] [55] [61] [63] [68] [72] [74] [76]
31	Serita M. Nelesen	[81] [83]
32	Scott Nettles	[35] [39] [41] [42]
33	Anneke Padolina	[72]
34	Michael Paterson	[15]
35	Cynthia A. Phillips	[20] [22] [23] [24] [27] [37]
36	Sindhu Raghavan	[83]
37	Vijaya Ramachandran	[67] [73] [77] [79]
38	Satish Rao	[80]
39	Linda A. Raubeson	[46] [62]
40	Kenneth Rice	[31] [35] [41]
41	Donald Ringe	[26]
42	Usman Roshan	[48] [55] [60] [61] [63] [75]
43	Steven Salzberg (Steven L. Salzberg)	[85]
44	Kelly Ann Smith	[44]
45	Sagi Snir	[80]
46	Mike A. Steel (Michael Anthony Steel)	[6] [29] [30] [33] [34] [36] [38]
47	Cara Stockham	[64]
48	Jerry Sun	[48] [55] [63] [68] [72]
49	Elizabeth Sweedyk	[20] [23]
50	M. Shel Swenson	[84]
51	László A. Székely	[29] [30] [36] [38]
52	Jijun Tang	[58]
53	Ann Taylor	[26]
54	Anna Tholse	[68] [72]
55	Ruth E. Timme	[72]
56	Lisa Vawter	[43] [51] [61] [66]
57	Li-San Wang	[46] [50] [56] [58] [59] [62] [64] [78]
58	Todd Wareham (Harold T. Wareham)	[45]
59	Tiffani L. Williams	[75]
60	Thomas Wimer	[10] [11]
61	Stacia K. Wyman	[46] [53] [56]
62	Mi Yan	[53]
63	Shibu Yooseph	[17] [24] [33] [34] [35] [37] [41]
64	D. Zhao	[81]
65	Binhai Zhu	[69] [70]

Colors in the list of coauthors