W. John Wilbur

	2009
50		G. Craig Murray, Jimmy J. Lin, W. John Wilbur, Zhiyong Lu: Users' adjustments to unsuccessful queries in biomedical search. JCDL 2009: 433-434
49		Zhiyong Lu, Won Kim, W. John Wilbur: Evaluation of query expansion using MeSH in PubMed. Inf. Retr. 12(1): 69-80 (2009)
48		Jimmy J. Lin, W. John Wilbur: Modeling actions of PubMed users with n-gram language models. Inf. Retr. 12(4): 487-503 (2009)
47		W. John Wilbur, Won Kim: The ineffectiveness of within-document term frequency in text classification. Inf. Retr. 12(5): 509-525 (2009)
46		Lana Yeganova, Donald C. Comeau, Won Kim, W. John Wilbur: How to interpret PubMed queries and why it matters. JASIST 60(2): 264-274 (2009)
	2008
45		Sunghwan Sohn, Donald C. Comeau, Won Kim, W. John Wilbur: Abbreviation definition identification based on automatic precision estimates. BMC Bioinformatics 9: (2008)
44		Hagit Shatkay, Fengxia Pan, Andrey Rzhetsky, W. John Wilbur: Multi-dimensional classification of biomedical text: Toward automated, practical provision of high-utility text to diverse users. Bioinformatics 24(18): 2086-2093 (2008)
43		Jimmy J. Lin, Michael DiCuccio, Vahan Grigoryan, W. John Wilbur: Navigating information spaces: A case study of related article search in PubMed. Inf. Process. Manage. 44(5): 1771-1783 (2008)
	2007
42		Rezarta Islamaj Dogan, Lise Getoor, W. John Wilbur: Characterizing RNA Secondary-Structure Features and Their Effects on Splice-Site Prediction. ICDM Workshops 2007: 89-94
41		Dina Demner-Fushman, Susanne M. Humphrey, Nicholas C. Ide, Russell F. Loane, James G. Mork, Patrick Ruch, Miguel E. Ruiz, Lawrence H. Smith, W. John Wilbur, Alan R. Aronson: Combining Resources to Find Answers to Biomedical Questions. TREC 2007
40		Rezarta Islamaj Dogan, Lise Getoor, W. John Wilbur, Stephen M. Mount: Features generated for computational splice-site prediction correspond to functional elements. BMC Bioinformatics 8: (2007)
39		Jimmy J. Lin, W. John Wilbur: PubMed related articles: a probabilistic topic-based model for content similarity. BMC Bioinformatics 8: (2007)
38		Jimmy J. Lin, W. John Wilbur: Syntactic sentence compression in the biomedical domain: facilitating access to related articles. Inf. Retr. 10(4-5): 393-414 (2007)
37		Hong Yu, Won Kim, Vasileios Hatzivassiloglou, W. John Wilbur: Using MEDLINE as a knowledge source for disambiguating abbreviations and acronyms in full-text biomedical journal articles. Journal of Biomedical Informatics 40(2): 150-159 (2007)
36		Rezarta Islamaj Dogan, Lise Getoor, W. John Wilbur, Stephen M. Mount: SplicePort - An interactive splice-site analysis tool. Nucleic Acids Research 35(Web-Server-Issue): 285-291 (2007)
	2006
35		Rezarta Islamaj Dogan, Lise Getoor, W. John Wilbur: A Feature Generation Algorithm for Sequences with Application to Splice-Site Prediction. PKDD 2006: 553-560
34		Dina Demner-Fushman, Susanne M. Humphrey, Nicholas C. Ide, Russell F. Loane, Patrick Ruch, Miguel E. Ruiz, Lawrence H. Smith, Lorraine K. Tanabe, W. John Wilbur, Alan R. Aronson: Finding Relevant Passages in Scientific Articles: Fusion of Automatic Approaches vs. an Interactive Team Effort. TREC 2006
33		Hong Yu, Won Kim, Vasileios Hatzivassiloglou, W. John Wilbur: A large scale, corpus-based approach for automatically disambiguating biomedical abbreviations. ACM Trans. Inf. Syst. 24(3): 380-404 (2006)
32		W. John Wilbur, Andrey Rzhetsky, Hagit Shatkay: New directions in biomedical text annotation: definitions, guidelines and corpus construction. BMC Bioinformatics 7: 356 (2006)
31		W. John Wilbur, Won Kim, Natalie Xie: Spelling correction in the PubMed search engine. Inf. Retr. 9(5): 543-564 (2006)
	2005
30		Alan R. Aronson, Dina Demner-Fushman, Susanne M. Humphrey, Jimmy J. Lin, Patrick Ruch, Miguel E. Ruiz, Lawrence H. Smith, Lorraine K. Tanabe, W. John Wilbur, Hongfang Liu: Fusion of Knowledge-Intensive and Statistical Approaches for Retrieving and Annotating Textual Genomics Documents. TREC 2005
29		Lorraine K. Tanabe, Natalie Xie, Lynne H. Thom, Wayne Matten, W. John Wilbur: GENETAG: a tagged corpus for gene/protein named entity recognition. BMC Bioinformatics 6(S-1): (2005)
28		W. John Wilbur, Lana Yeganova, Won Kim: The Synergy Between PAV and AdaBoost. Machine Learning 61(1-3): 71-103 (2005)
	2004
27		Hong Yu, Won Kim, Vasileios Hatzivassiloglou, W. John Wilbur: Using MEDLINE as a Knowledge Source for Disambiguating Abbreviations in Full-Text Biomedical Journal Articles. CBMS 2004: 27-
26		Alan R. Aronson, Susanne M. Humphrey, Nicholas C. Ide, Won Kim, Russell R. Loane, James G. Mork, Lawrence H. Smith, Lorraine K. Tanabe, W. John Wilbur, Natalie Xie, Dina Demner-Fushman, Hongfang Liu: Knowledge-Intensive and Statistical Approaches to the Retrieval and Annotation of Genomics MEDLINE Citations. TREC 2004
25		Lawrence H. Smith, Thomas C. Rindflesch, W. John Wilbur: MedPost: a part-of-speech tagger for bioMedical text. Bioinformatics 20(14): 2320-2321 (2004)
24		Lana Yeganova, Lawrence H. Smith, W. John Wilbur: Identification of related gene/protein names based on an HMM of name variations. Computational Biology and Chemistry 28(2): 97-107 (2004)
23		Lawrence H. Smith, W. John Wilbur: Retrieving definitional content for ontology development. Computational Biology and Chemistry 28(5-6): 387-391 (2004)
22		Lorraine K. Tanabe, W. John Wilbur: Generation of a Large Gene/protein Lexicon by Morphological Pattern Analysis. J. Bioinformatics and Computational Biology 1(4): 611-626 (2004)
21		Donald C. Comeau, W. John Wilbur: Non-word identification or spell checking without a dictionary. JASIST 55(2): 169-177 (2004)
20		Andrey Rzhetsky, Ivan Iossifov, Tomohiro Koike, Michael Krauthammer, Pauline Kra, Mitzi Morris, Hong Yu, Pablo Ariel Duboué, Wubin Weng, W. John Wilbur: GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data. Journal of Biomedical Informatics 37(1): 43-53 (2004)
	2003
19		Lawrence H. Smith, Lana Yeganova, W. John Wilbur: Hidden Markov models and optimized sequence alignments. Computational Biology and Chemistry 27(1): 77-84 (2003)
	2002
18		Lorraine K. Tanabe, W. John Wilbur: Tagging gene and protein names in full text articles. ACL Workshop on Natural Language Processing in the Biomedical Domain 2002: 9-13
17		W. John Wilbur: A Thematic Analysis of the AIDS Literature. Pacific Symposium on Biocomputing 2002: 386-397
16		Lorraine K. Tanabe, W. John Wilbur: Tagging gene and protein names in biomedical text. Bioinformatics 18(8): 1124-1132 (2002)
15		Hong Yu, Vasileios Hatzivassiloglou, Andrey Rzhetsky, W. John Wilbur: Automatically identifying gene/protein terms in MEDLINE abstracts. Journal of Biomedical Informatics 35(5-6): 322-330 (2002)
	2001
14		Won Kim, W. John Wilbur: Amino Acid Residue Environments and Predictions of Residue Type. Computers & Chemistry 25(4): 411-422 (2001)
13		Won Kim, W. John Wilbur: Corpus-based statistical screening for content-bearing terms. JASIST 52(3): 247-259 (2001)
	2000
12		Hagit Shatkay, W. John Wilbur: Finding Themes in Medline Documents: Probabilistic Similarity Search. ADL 2000: 183-192
11		Hagit Shatkay, Stephen Edwards, W. John Wilbur, Mark Boguski: Genes, Themes, and Microarrays: Using Information Retrieval for Large-Scale Gene Analysis. ISMB 2000: 317-328
10		W. John Wilbur, Andrew F. Neuwald: A Theory of Information with Special Application to Search Problems. Computers & Chemistry 24(1): 33-42 (2000)
	1998
9		W. John Wilbur: The Knowledge in Multiple Human Relevance Judgments. ACM Trans. Inf. Syst. 16(2): 101-126 (1998)
8		W. John Wilbur: A Comparison of Group and Individual Performance Among Subject Experts and Untrained Workers at the Document Retrieval Task. JASIS 49(6): 517-529 (1998)
	1996
7		W. John Wilbur: Human Subjectivity and Performance Limits in Document Retrieval. Inf. Process. Manage. 32(5): 515-527 (1996)
6		Yiming Yang, W. John Wilbur: Using Corpus Statistics to Remove Redundant Words in Text Categorization. JASIS 47(5): 357-369 (1996)
	1994
5		W. John Wilbur, Leona Coffee: The Effectiveness of Document Neighboring in Search Enhancement. Inf. Process. Manage. 30(2): 253-266 (1994)
	1993
4		W. John Wilbur: Retrieval Testing with Hypergeometric Document Models. JASIS 44(6): 340-351 (1993)
	1992
3		W. John Wilbur: An information measure of retrieval performance. Inf. Syst. 17(4): 283-298 (1992)
2		W. John Wilbur: Retrieval Testing by the Comparison of Statistically Independent Retrieval Methods. JASIS 43(5): 358-370 (1992)
	1984
1		David J. Lipman, W. John Wilbur, Temple F. Smith, Michael S. Waterman: On the statistical significance of nucleic acid similarities. Nucleic Acids Research 12(1): 215-226 (1984)

Coauthor Index

1	Alan R. Aronson	[26] [30] [34] [41]
2	Mark Boguski	[11]
3	Leona Coffee	[5]
4	Donald C. Comeau	[21] [45] [46]
5	Dina Demner-Fushman	[26] [30] [34] [41]
6	Michael DiCuccio	[43]
7	Rezarta Islamaj Dogan	[35] [36] [40] [42]
8	Pablo Ariel Duboué	[20]
9	Stephen Edwards	[11]
10	Lise Getoor	[35] [36] [40] [42]
11	Vahan Grigoryan	[43]
12	Vasileios Hatzivassiloglou	[15] [27] [33] [37]
13	Susanne M. Humphrey	[26] [30] [34] [41]
14	Nicholas C. Ide	[26] [34] [41]
15	Ivan Iossifov	[20]
16	Won Kim	[13] [14] [26] [27] [28] [31] [33] [37] [45] [46] [47] [49]
17	Tomohiro Koike	[20]
18	Pauline Kra	[20]
19	Michael Krauthammer	[20]
20	Jimmy J. Lin	[30] [38] [39] [43] [48] [50]
21	David J. Lipman	[1]
22	Hongfang Liu	[26] [30]
23	Russell F. Loane	[34] [41]
24	Russell R. Loane	[26]
25	Zhiyong Lu	[49] [50]
26	Wayne Matten	[29]
27	James G. Mork	[26] [41]
28	Mitzi Morris	[20]
29	Stephen M. Mount	[36] [40]
30	G. Craig Murray	[50]
31	Andrew F. Neuwald	[10]
32	Fengxia Pan	[44]
33	Thomas C. Rindflesch	[25]
34	Patrick Ruch	[30] [34] [41]
35	Miguel E. Ruiz	[30] [34] [41]
36	Andrey Rzhetsky	[15] [20] [32] [44]
37	Hagit Shatkay	[11] [12] [32] [44]
38	Lawrence H. Smith	[19] [23] [24] [25] [26] [30] [34] [41]
39	Temple F. Smith	[1]
40	Sunghwan Sohn	[45]
41	Lorraine K. Tanabe	[16] [18] [22] [26] [29] [30] [34]
42	Lynne H. Thom	[29]
43	Michael S. Waterman	[1]
44	Wubin Weng	[20]
45	Natalie Xie	[26] [29] [31]
46	Yiming Yang	[6]
47	Lana Yeganova	[19] [24] [28] [46]
48	Hong Yu	[15] [20] [27] [33] [37]

Colors in the list of coauthors