University of Georgia, Athens, GA, USA
List of publications from the DBLP Bibliography Server - FAQother persons with the same name:
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 | 2012 | |
|---|---|---|
| 153 |      | Ying Xu, Rong Qu: A hybrid scatter search meta-heuristic for delay-constrained multicast routing problems. Appl. Intell. 36(1): 229-241 (2012) |
| 152 | | Ying Xu, Rong Qu: An iterative local search approach based on fitness landscapes analysis for the delay-constrained multicast routing problem. Computer Communications 35(3): 352-365 (2012) |
| 2011 | ||
| 151 | | Yixiong Liang, Lingbo Liu, Ying Xu, Yao Xiang, Beiji Zou: Multi-task GLOH feature selection for human age estimation. ICIP 2011: 565-568 |
| 150 | | Ying Xu, Yuejun Wei, Yuhang Yang, Wen Chen: On the Super Codes of the First Order Reed-Muller Code Based on m-Sequence Pairs. VTC Spring 2011: 1-5 |
| 149 | | Yixiong Liang, Lingbo Liu, Ying Xu, Yao Xiang, Beiji Zou: Multi-task GLOH feature selection for human age estimation CoRR abs/1102.2749: (2011) |
| 148 | | Ying Xu, Jixiang Meng: Gaussian integral circulant digraphs. Discrete Mathematics 311(1): 45-50 (2011) |
| 147 | | Joshua C. Y. Lai, Ying Xu, Erry Gunawan, E. C. Chua, A. Maskooki, Yong Liang Guan, Kay Soon Low, Cheong Boon Soh, Chueh-Loo Poh: Wireless Sensing of Human Respiratory Parameters by Low-Power Ultrawideband Impulse Radio Radar. IEEE T. Instrumentation and Measurement 60(3): 928-938 (2011) |
| 146 | | Ying Xu, Rong Qu: Solving multi-objective multicast routing problems by evolutionary multi-objective simulated annealing algorithms with variable neighbourhoods. JORS 62(2): 313-325 (2011) |
| 145 | | Yixiong Liang, Ying Xu, Lingbo Liu, Shenghui Liao, Beiji Zou: A Multi-layer Model for Face Aging Simulation. T. Edutainment 6: 182-192 (2011) |
| 2010 | ||
| 144 | | Randy Goebel, Shane Bergsma, Ying Xu, Christoph Ringlstetter, Mi-Young Kim: The nature of noise in linguistic corpora. AND 2010: 1-2 |
| 143 | | Ping Luo, Ying Xu, Lihai Yao, Yaolin Lou: An improved Particle Swarm Optimization algorithm. ICNC 2010: 2576-2580 |
| 142 | | Ying Xu, Tinglong Dai, Katia P. Sycara, Michael Lewis: Service level differentiation in multi-robots control. IROS 2010: 2224-2230 |
| 141 | | Erran L. Li, Kun Tan, Harish Viswanathan, Ying Xu, Yang Richard Yang: Retransmission != repeat: simple retransmission permutation can resolve overlapping channel collisions. MOBICOM 2010: 281-292 |
| 140 | | Ying Xu, Yuejun Wei, Wen Chen: On the Performance Evaluation of Quasi-Cyclic LDPC Codes with Arbitrary Puncturing. VTC Spring 2010: 1-5 |
| 139 | | Qi Liu, Juan Cui, Qiang Yang, Ying Xu: In-silico prediction of blood-secretory human proteins using a ranking algorithm. BMC Bioinformatics 11: 250 (2010) |
| 138 | | Fengfeng Zhou, Ying Xu: cBar: a computer program to distinguish plasmid-derived from chromosome-derived sequence fragments in metagenomics data. Bioinformatics 26(16): 2051-2052 (2010) |
| 137 | | Wen-Chi Chou, Yanbin Yin, Ying Xu: GolgiP: prediction of Golgi-resident proteins in plants. Bioinformatics 26(19): 2464-2465 (2010) |
| 136 | | Xingqin Qi, Guojun Li, Shuguang Li, Ying Xu: Sorting Genomes by Reciprocal Translocations, Insertions, and Deletions. IEEE/ACM Trans. Comput. Biology Bioinform. 7(2): 365-374 (2010) |
| 135 | | Ying Xu, Peter W. Markstein: Foreword: Advances in Computational Systems Bioinformatics. J. Bioinformatics and Computational Biology 8(2): (2010) |
| 134 | | Bao-Xia Fan, Liang Yang, Jiang-Mei Wang, Ru Wang, Bin Xiao, Ying Xu, Dong Liu, Ji-Ye Zhao: Physical Implementation of the 1GHz Godson-3 Quad-Core Microprocessor. J. Comput. Sci. Technol. 25(2): 192-199 (2010) |
| 133 | | Ji-Ye Zhao, Dong Liu, Dan-Dan Huan, Meng-Hao Su, Bin Xiao, Ying Xu, Feng Shi, Chen Chen, Song Wang: Physical Design Methodology for Godson-2G Microprocessor. J. Comput. Sci. Technol. 25(2): 225-231 (2010) |
| 132 | | KeZheng Lin, Ying Xu, Yuan Zhong: Using Kernel Discriminant Analysis and 2DGabor Local Features Fusion for Face Recognition. JDCTA 4(8): 232-241 (2010) |
| 131 | | Augix Guohua Xu, Liu He, Zhongshan Li, Ying Xu, Mingfeng Li, Xing Fu, Zheng Yan, Yuan Yuan, Corinna Menzel, Na Li, Mehmet Somel, Hao Hu, Wei Chen, Svante Pääbo, Philipp Khaitovich: Intergenic and Repeat Transcription in Human, Chimpanzee and Macaque Brains Measured by RNA-Seq. PLoS Computational Biology 6(7): (2010) |
| 2009 | ||
| 130 | | Mi-Chia Ma, Hsiao-Fang Lin, Ying Xu: Detect the Different Isoforms Using GeneChip Human Exon 1.0 ST Arrays. BMEI 2009: 1-5 |
| 129 | | Jianyi Zhang, Ying Xu, Fei Chen: Research on Operating Parameters and Energy Consumption of Cold Store Based on Rough Set Theory. FSKD (5) 2009: 207-210 |
| 128 | | Ying Xu, D. D. Zhang, Lei Xu: Scientific Application Based Performance on Magic Cube. HPCA (China) 2009: 485-490 |
| 127 | | Rong Qu, Ying Xu, Graham Kendall: A Variable Neighborhood Descent Search Algorithm for Delay-Constrained Least-Cost Multicast Routing. LION 2009: 15-29 |
| 126 | | Yikui Zhai, Ying Xu: Block Precoding Based ICI Mitigation Technique for OFDM System. PACCS 2009: 58-61 |
| 125 | | Glenn R. Luecke, James Coyle, James Hoekstra, Marina Kraeva, Ying Xu, Mi-Young Park, Elizabeth Kleiman, Olga Weiss, André Wehe, Melissa Yahya: The Importance of Run-Time Error Detection. Parallel Tools Workshop 2009: 145-155 |
| 124 | | Ying Xu, Aabhas S. Agarwal, Brian T. Davis: Prediction in Dynamic SDRAM Controller Policies. SAMOS 2009: 128-138 |
| 123 | | Guojun Li, Xiaotie Deng, Ying Xu: A polynomial-time approximation scheme for embedding hypergraph in a cycle. ACM Transactions on Algorithms 5(2): (2009) |
| 122 | | Qi Liu, Jinling Huang, Huiqing Liu, Ping Wan, Xiuzi Ye, Ying Xu: Analyses of domains and domain fusions in human proto-oncogenes. BMC Bioinformatics 10: (2009) |
| 121 | | Thao T. Tran, Fengfeng Zhou, Sarah Marshburn, Mark Stead, Sidney R. Kushner, Ying Xu: De novo computational prediction of non-coding RNA genes in prokaryotic genomes. Bioinformatics 25(22): 2897-2905 (2009) |
| 120 | | Fengfeng Zhou, Victor Olman, Ying Xu: Large-Scale Analyses of Glycosylation in Cellulases. Genomics, Proteomics & Bioinformatics 7(4): 194-199 (2009) |
| 119 | | Victor Olman, Fenglou Mao, Hongwei Wu, Ying Xu: Parallel Clustering Algorithm for Large Data Sets with Applications in Bioinformatics. IEEE/ACM Trans. Comput. Biology Bioinform. 6(2): 344-352 (2009) |
| 118 | | Guojun Li, Dongsheng Che, Ying Xu: A Universal operon Predictor for prokaryotic genomes. J. Bioinformatics and Computational Biology 7(1): 19-38 (2009) |
| 117 | | Ying Xu, Ming Li, Tao Jiang: Preface. J. Comput. Sci. Technol. 25(1): 1-2 (2009) |
| 116 | | Ying Xu: Computational Challenges in Deciphering Genomic Structures of Bacteria. J. Comput. Sci. Technol. 25(1): 53-70 (2009) |
| 115 | | Fenglou Mao, PhuongAn Dam, Jacky Chou, Victor Olman, Ying Xu: DOOR: a database for prokaryotic operons. Nucleic Acids Research 37(Database-Issue): 459-463 (2009) |
| 2008 | ||
| 114 | | Ying Xu, Lingling Mu, Hongying Zan: Design of Online Automatic Assessment. CSSE (5) 2008: 1275-1278 |
| 113 | | Dongsheng Che, Guojun Li, Shane T. Jensen, Jun S. Liu, Ying Xu: PFP: A Computational Framework for Phylogenetic Footprinting in Prokaryotic Genomes. ISBRA 2008: 110-121 |
| 112 | | Guojun Li, Zhijie Liu, Jun-tao Guo, Ying Xu: An Algorithm for Simultaneous Backbone Threading and Side-Chain Packing. Algorithmica 51(4): 435-450 (2008) |
| 111 | | Fengfeng Zhou, Victor Olman, Ying Xu: Barcodes for genomes and applications. BMC Bioinformatics 9: (2008) |
| 110 | | Juan Cui, Qi Liu, David Puett, Ying Xu: Computational prediction of human proteins that can be secreted into the bloodstream. Bioinformatics 24(20): 2370-2375 (2008) |
| 109 | | Paul S. F. Yip, K. F. Lam, Ying Xu, P. H. Chau, Jing Xu, Wenhu Chang, Yingchun Peng, Zejun Liu, Xueqin Xie, H. Y. Lau: Reconstruction of the Infection Curve for SARS Epidemic in Beijing, China Using a Back-Projection Method. Communications in Statistics - Simulation and Computation 37(2): 425-433 (2008) |
| 108 | | Hongwei Wu, Fenglou Mao, Victor Olman, Ying Xu: On application of directons to functional classification of genes in prokaryotes. Computational Biology and Chemistry 32(3): 176-184 (2008) |
| 107 | | Minghui Jiang, Ying Xu, Binhai Zhu: Protein Structure-structure Alignment with Discrete FrÉchet Distance. J. Bioinformatics and Computational Biology 6(1): 51-64 (2008) |
| 106 | | Kyle Ellrott, Jun-tao Guo, Victor Olman, Ying Xu: Improving the Performance of protein Threading Using Insertion/Deletion Frequency Arrays. J. Bioinformatics and Computational Biology 6(3): 585-602 (2008) |
| 105 | | Qi Liu, Victor Olman, Huiqing Liu, Xiuzi Ye, Shilun Qiu, Ying Xu: RNACluster: An integrated tool for RNA secondary structure comparison and clustering. Journal of Computational Chemistry 29(9): 1517-1526 (2008) |
| 2007 | ||
| 104 | | Minghui Jiang, Ying Xu, Binhai Zhu: Protein Structure-Structure Alignment with Discrete Fr'echet Distance. APBC 2007: 131-141 |
| 103 | | Dongsheng Che, Jizhen Zhao, Liming Cai, Ying Xu: Operon Prediction in Microbial Genomes Using Decision Tree Approach. CIBCB 2007: 135-142 |
| 102 | | Hongwei Wu, Fenglou Mao, Victor Olman, Ying Xu: An Algorithm for Hierarchical Classification of Genes of Prokaryotic Genomes. ISBRA 2007: 551-563 |
| 101 | | Guojun Li, Zhijie Liu, Jun-tao Guo, Ying Xu: An Algorithm for Simultaneous Backbone Threading and Side-Chain Packing. Algorithmica 48(4): 329-342 (2007) |
| 100 | | Ying Xu, Hui Yu, Hua Cai, Qingjun Liu, Ping Wang: A Novel Integrated Cell-Based Biosensor for Extracellular Electrophysiological Monitoring. I. J. Information Acquisition 4(3): 193-204 (2007) |
| 99 | | Ying Xu, Guo Wei: On the Construction of Quasi-Systematic Block-Circulant LDPC Codes. IEEE Communications Letters 11(11): 886-888 (2007) |
| 98 | | Guojun Li, Jizhu Lu, Victor Olman, Ying Xu: Prediction of cis-Regulatory Elements: from High-Information Content Analysis to Motif Identification. J. Bioinformatics and Computational Biology 5(4): 817-838 (2007) |
| 2006 | ||
| 97 | | Ilham Benyahia, Jean-Yves Potvin, Ying Xu: A Complex Applications Framework Supporting Tolerant Dynamic Vehicle Dispatching. AICCSA 2006: 875-881 |
| 96 | | Ying Xu, Fu-yuan Xu, Sheng-qi Li: A System for Project Distribution Based on the Semantic Matching Method. CIMCA/IAWTIC 2006: 187 |
| 95 | | Ying Xu, Fu-yuan Xu: Research on Context Modeling Based on Ontology. CIMCA/IAWTIC 2006: 188 |
| 94 | | Ying Xu, Fu-yuan Xu: Researching on The Method and Technology of Creating Temporal Categories for an Ontology of Time. CIMCA/IAWTIC 2006: 264 |
| 93 | | Zhengchang Su, Fenglou Mao, Hongwei Wu, PhuongAn Dam, Xin Chen, Tao Jiang, Victor Olman, Brian Palenik, Ying Xu: Understanding microbial genomic structures and applications to biological pathway inference. GrC 2006: 23-24 |
| 92 | | Yougang Song, Ying Xu, Brett D. Fleisch: Design and Performance Evaluation of a Proxy-based Java Rewriting Security System. ICDCS 2006: 11 |
| 91 | | Chunmei Liu, Bo Yan, Yinglei Song, Ying Xu, Liming Cai: Peptide sequence tag-based blind identification of post-translational modifications with point process model. ISMB (Supplement of Bioinformatics) 2006: 307-313 |
| 90 | | Robin Kramer, Victor Olman, Ying Xu, Dong Xu: DigitalTree: A Tool for Displaying Biological Data in Tree Structure. International Conference on Computational Science (2) 2006: 855-862 |
| 89 | | Chunmei Liu, Yinglei Song, Bo Yan, Ying Xu, Liming Cai: Fast De novo Peptide Sequencing and Spectral Alignment via Tree Decomposition. Pacific Symposium on Biocomputing 2006: 255-266 |
| 88 | | Bo Yan, Tong Zhou, Peng Wang, Zhijie Liu, Vincent A. Emanuele II, Victor Olman, Ying Xu: A Point-Process Model for Rapid Identification of Post-Translational Modifications. Pacific Symposium on Biocomputing 2006: 327-338 |
| 87 | | Ying Xu, Roch Guérin: A Double Horizon Defense Design for Robust Regulation of Malicious Traffic. SecureComm 2006: 1-11 |
| 86 | | Xinglai Ji, Ying Xu: libSRES: a C library for stochastic ranking evolution strategy for parameter estimation. Bioinformatics 22(1): 124-126 (2006) |
| 85 | | Fengfeng Zhou, Yu Xue, Xuebiao Yao, Ying Xu: CSS-Palm: palmitoylation site prediction with a clustering and scoring strategy (CSS). Bioinformatics 22(7): 894-896 (2006) |
| 84 | | Jean-Yves Potvin, Ying Xu, Ilham Benyahia: Vehicle routing and scheduling with dynamic travel times. Computers & OR 33: 1129-1137 (2006) |
| 83 | | Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai: Efficient Parameterized Algorithms for Biopolymer Structure-Sequence Alignment. IEEE/ACM Trans. Comput. Biology Bioinform. 3(4): 423-432 (2006) |
| 82 | | Zhong Chen, Ying Xu: Structure Prediction of Helical Transmembrane Proteins at Two Length Scales. J. Bioinformatics and Computational Biology 4(2): 317-334 (2006) |
| 81 | | Victor Olman, Chindo Hicks, Peng Wang, Ying Xu: Gene Expression Data Analysis in Subtypes of Ovarian Cancer Using Covariance Analysis. J. Bioinformatics and Computational Biology 4(5): 999-1014 (2006) |
| 80 | | Yu Xue, Fengfeng Zhou, Chuanhai Fu, Ying Xu, Xuebiao Yao: SUMOsp: a web server for sumoylation site prediction. Nucleic Acids Research 34(Web-Server-Issue): 254-257 (2006) |
| 2005 | ||
| 79 | | Zhong Chen, Ying Xu: Multi-Scale Hierarchical Structure Prediction of Helical Transmembrane Proteins. CSB 2005: 203-207 |
| 78 | | Hongwei Wu, Fenglou Mao, Victor Olman, Ying Xu: Accurate Prediction of Orthologous Gene Groups in Microbes. CSB 2005: 73-79 |
| 77 | | Peng Wang, Bo Yan, Jun-tao Guo, Chindo Hicks, Ying Xu: Structural genomics analysis of alternative splicing and its application in modeling structures of alternatively spliced variants. CSB Workshops 2005: 217- |
| 76 | | Guojun Li, Jizhu Lu, Victor Olman, Ying Xu: PROMOCO: a New Program for Prediction of cis Regulatory Elements: From High-Information Content Analysis to Clique Identification. CSB Workshops 2005: 35-36 |
| 75 | | PhuongAn Dam, Victor Olman, Ying Xu: Improving Operon Prediction in E. coli. CSB Workshops 2005: 69-70 |
| 74 | | Junfeng Tian, Yue Fu, Ying Xu, Jian-ling Wang: Intrusion Detection Combining Multiple Decision Trees by Fuzzy logic. PDCAT 2005: 256-258 |
| 73 | | Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai: Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment. WABI 2005: 376-388 |
| 72 | | Bo Yan, Chongle Pan, Victor Olman, Robert L. Hettich, Ying Xu: A graph-theoretic approach for the separation of b and y ions in tandem mass spectra. Bioinformatics 21(5): 563-574 (2005) |
| 71 | | Pei Hao, Wei-Zhong He, Yin Huang, Liang-Xiao Ma, Ying Xu, Hong Xi, Chuan Wang, Boshu Liu, Jin-Miao Wang, Yi-Xue Li, Yang Zhong: MPSS: an integrated database system for surveying a set of proteins. Bioinformatics 21(9): 2142-2143 (2005) |
| 70 | | Guojun Li, Ying Xu, Chuanping Chen, Zhenhong Liu: On Connected [g, f +1]-Factors in Graphs. Combinatorica 25(4): 393-405 (2005) |
| 69 | | Ying Xu, Roch Guérin: On the robustness of router-based denial-of-service (DoS) defense systems. Computer Communication Review 35(3): 47-60 (2005) |
| 68 | | Ying Xu, Roch Guérin: Individual QoS versus aggregate QoS: a loss performance study. IEEE/ACM Trans. Netw. 13(2): 370-383 (2005) |
| 67 | | ZhenQiu Liu, Dechang Chen, Ying Xu, Jian Liu: Logistic support vector machines and their application to gene expression data. IJBRA 1(2): 169-182 (2005) |
| 66 | | ZhenQiu Liu, Dechang Chen, Halima Bensmail, Ying Xu: Clustering Gene Expression Data with Kernel Principal Components. J. Bioinformatics and Computational Biology 3(2): 303-316 (2005) |
| 65 | | Tema Fridman, Jane Razumovskaya, Nathan Verberkmoes, Gregory B. Hurst, Vladimir Protopopescu, Ying Xu: The Probability Distribution for a Random Match between an Experimental-theoretical Spectral Pair in Tandem Mass Spectrometry. J. Bioinformatics and Computational Biology 3(2): 455-476 (2005) |
| 64 | | Ying Xu, Liming Cai, Zhiping Weng: Preface. J. Comput. Sci. Technol. 20(4): 433 (2005) |
| 63 | | Bo Yan, Youxing Qu, Fenglou Mao, Victor Olman, Ying Xu: PRIME: A Mass Spectrum Data Mining Tool for De Nova Sequencing and PTMs Identification. J. Comput. Sci. Technol. 20(4): 483-490 (2005) |
| 62 | | Zhi-Zhong Chen, Guohui Lin, Romeo Rizzi, Jianjun Wen, Dong Xu, Ying Xu, Tao Jiang: More Reliable Protein NMR Peak Assignment via Improved 2-Interval Scheduling. Journal of Computational Biology 12(2): 129-146 (2005) |
| 2004 | ||
| 61 | | Zhengchang Su, PhuongAn Dam, Victor Olman, Ying Xu: Computational Inference of Transcription Regulation and Response Networks in Synechococcus sp. WH8102. BIBE 2004: 5-8 |
| 60 | | Bo Yan, Chongle Pan, Victor Olman, Robert L. Hettich, Ying Xu: Separation of Ion Types in Tandem Mass Spectrometry Data Interpretation - A Graph-Theoretic Approach. CSB 2004: 236-244 |
| 59 | | Victor Olman, Hanchuan Peng, Zhengchang Su, Ying Xu: Mapping of Microbial Pathways through Constrained Mapping of Orthologous Genes. CSB 2004: 363-370 |
| 58 | | Peng Wang, Zhengchang Su, PhuongAn Dam, Ying Xu: A Knowledge Base for Computational Pathway Reconstruction. CSB 2004: 612-613 |
| 57 | | PhuongAn Dam, Zhengchang Su, Victor Olman, Ying Xu: In Silico Construction of the Carbon Fixation Pathway in Synechococcus sp. WH8102. CSB 2004: 614-615 |
| 56 | | Zhengchang Su, PhuongAn Dam, X. Chen, Victor Olman, Tao Jiang, Ying Xu: Computational Construction of Nitrogen Assimilation Pathway in Cyanobacteria Synechococcus sp. WH8102. CSB 2004: 640-641 |
| 55 | | Fenglou Mao, Zhengchang Su, Victor Olman, David Chuang, Ying Xu: Pathway Mapping with Operon Information: An Integer-Programming Method. CSB 2004: 642-643 |
| 54 | | Victor Olman, Jizhu Lu, PhuongAn Dam, Zhengchang Su, Ying Xu: CUBIC: Search for Binding Sites. CSB 2004: 666-667 |
| 53 | | Peng Wang, Zhengchang Su, Jun-tao Guo, Ying Xu: Structural Analysis of FGFR1 Kinase Activation through Molecular Dynamics Simulation. CSB 2004: 700-701 |
| 52 | | Jun-tao Guo, Ying Xu: Molecular Modeling of Full-Length OxyR from Shewanella oneidensis MR-1 and Molecular Dynamics Studies of the Activation Domain. CSB 2004: 708-709 |
| 51 | | Shu Tao, Kuai Xu, Ying Xu, Teng Fei, Lixin Gao, Roch Guérin, James F. Kurose, Donald F. Towsley, Zhi-Li Zhang: Exploring the Performance Benefits of End-to-End Path Switching. ICNP 2004: 304-315 |
| 50 | | Youxing Qu, Jun-tao Guo, Victor Olman, Ying Xu: Protein Fold Recognition Through Application of Residual Dipolar Coupling Data. Pacific Symposium on Biocomputing 2004: 459-470 |
| 49 | | Shu Tao, Kuai Xu, Ying Xu, Teng Fei, Lixin Gao, Roch Guérin, James F. Kurose, Donald F. Towsley, Zhi-Li Zhang: Exploring the performance benefits of end-to-end path switching. SIGMETRICS 2004: 418-419 |
| 48 | | Ying Xu, Xiaoyu Song, Eduard Cerny, Otmane Aït Mohamed: Model Checking for a First-Order Temporal Logic Using Multiway Decision Graphs (MDGs). Comput. J. 47(1): 71-84 (2004) |
| 47 | | Ying Xu, Brett D. Fleisch: NFS-cc: tuning NFS for concurrent read sharing. IJHPCN 1(4): 203-213 (2004) |
| 46 | | Jinbo Xu, Ming Li, Ying Xu: Protein Threading by Linear Programming: Theoretical Analysis and Computational Results. J. Comb. Optim. 8(4): 403-418 (2004) |
| 45 | | Jun-tao Guo, Kyle Ellrott, Won Jae Chung, Dong Xu, Sergei Passovets, Ying Xu: PROSPECT-PSPP: an automatic computational pipeline for protein structure prediction. Nucleic Acids Research 32(Web-Server-Issue): 522-525 (2004) |
| 2003 | ||
| 44 | | Yu Chen, Trupti Joshi, Ying Xu, Dong Xu: Towards Automated Derivation of Biological Pathways Using High-Throughput Biological Data. BIBE 2003: 18-25 |
| 43 | | Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu: A Computational Pipeline for Protein Structure Prediction and Analysis at Genome Scale. BIBE 2003: 3-10 |
| 42 | | Jane Razumovskaya, Victor Olman, Dong Xu, Edward C. Uberbacher, Nathan Verberkmoes, Ying Xu: A Computational Method for Assessing Peptide-Identification Reliability in Tandem Mass Spectrometry Analysis with SEQUEST. CSB 2003: 421-423 |
| 41 | | Victor Olman, Dong Xu, Ying Xu: CUBIC: Identification of Regulatory Binding Sites Through Data Clustering. CSB 2003: 448-449 |
| 40 | | Zhengchang Su, PhuongAn Dam, Xin Chen, Victor Olman, Tao Jiang, Brian Palenik, Ying Xu: Computational Inference of Regulatory Pathways in Microbes. CSB 2003: 631-633 |
| 39 | | Zhi-Zhong Chen, Tao Jiang, Guohui Lin, Romeo Rizzi, Jianjun Wen, Dong Xu, Ying Xu: More Reliable Protein NMR Peak Assignment via Improved 2-Interval Scheduling. ESA 2003: 580-592 |
| 38 | | Jinbo Xu, Ming Li, Guo-Hui Lin, Dongsup Kim, Ying Xu: Protein Threading by Linear Programming. Pacific Symposium on Biocomputing 2003: 264-275 |
| 37 | | Victor Olman, Dong Xu, Ying Xu: Identification of Regulatory Binding Sites Using Minimum Spanning Trees. Pacific Symposium on Biocomputing 2003: 327-338 |
| 36 | | Ying Xu, Roch Guérin: On Evaluating Loss Performance Deviation: A Simple Tool and Its Practical Implications. QoS-IP 2003: 1-18 |
| 35 | | Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu: A computational pipeline for protein structure prediction and analysis at genome scale. Bioinformatics 19(15): 1985-1996 (2003) |
| 34 | | Huandong Sun, Ming Li, Ying Xu: MOLVIE: an interactive visualization environment for molecular structures. Computer Methods and Programs in Biomedicine 71(1): 85-90 (2003) |
| 33 | | Victor Olman, Dong Xu, Ying Xu: Cubic: Identification of Regulatory Binding Sites through Data Clustering. J. Bioinformatics and Computational Biology 1(1): 21-40 (2003) |
| 32 | | Jinbo Xu, Ming Li, Dongsup Kim, Ying Xu: Raptor: Optimal Protein Threading by Linear Programming. J. Bioinformatics and Computational Biology 1(1): 95-118 (2003) |
| 31 | | Guohui Lin, Dong Xu, Zhi-Zhong Chen, Tao Jiang, Jianjun Wen, Ying Xu: Computational Assignment of Protein Backbone Nmr Peaks Byefficient Bounding and Filtering. J. Bioinformatics and Computational Biology 1(2): 387-410 (2003) |
| 30 | | Zhi-Zhong Chen, Tao Jiang, Guo-Hui Lin, Jianjun Wen, Dong Xu, Jinbo Xu, Ying Xu: Approximation algorithms for NMR spectral peak assignment. Theor. Comput. Sci. 1-3(299): 211-229 (2003) |
| 2002 | ||
| 29 | | Guo-Hui Lin, Dong Xu, Zhi-Zhong Chen, Tao Jiang, Jianjun Wen, Ying Xu: An Efficient Branch-and-Bound Algorithm for the Assignment of Protein Backbone NMR Peaks. CSB 2002: 165-174 |
| 28 | | Ying Xu, Roch Guérin: Individual QoS versus Aggregate QoS: A Loss Performance Study. INFOCOM 2002 |
| 27 | | Zhi-Zhong Chen, Tao Jiang, Guo-Hui Lin, Jianjun Wen, Dong Xu, Ying Xu: Improved Approximation Algorithms for NMR Spectral Peak Assignment. WABI 2002: 82-96 |
| 26 | | Dong Xu, Guangshan Li, Liyou Wu, Jizhong Zhou, Ying Xu: PRIMEGENS: robust and efficient design of gene-specific probes for microarray analysis. Bioinformatics 18(11): 1432-1437 (2002) |
| 25 | | Ying Xu, Victor Olman, Dong Xu: Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees. Bioinformatics 18(4): 536-545 (2002) |
| 2000 | ||
| 24 | | Ying Xu, Dong Xu, Oakley H. Crawford, J. Ralph Einstein, Engin Serpersu: Protein structure determination using protein threading and sparse NMR data (extended abstract). RECOMB 2000: 299-307 |
| 23 | | Ying Xu, Dong Xu, Harold N. Gabow: Protein domain decomposition using a graph-theoretic approach. Bioinformatics 16(12): 1091-1104 (2000) |
| 22 | | Dong Xu, Michael A. Unseren, Ying Xu, Edward C. Uberbacher: Sequence-structure specificity of a knowledge based energy function at the secondary structure level. Bioinformatics 16(3): 269-285 (2000) |
| 21 |  | Ying Xu, Dong Xu, Oakley H. Crawford, J. Ralph Einstein: A Computational Method for NMR-Constrained Protein Threading. Journal of Computational Biology 7(3-4): 449-467 (2000) |
| 1999 | ||
| 20 | | Ying Xu, Eduard Cerny, Allan Silburt, A. Coady, Ying Liu, Philip Pownall: Practical Application of Formal Verification Techniques on a Frame Mux/Demux Chip from Nortel Semiconductors. CHARME 1999: 110-124 |
| 19 | | Ying Xu, Satoru Miyano, Tom Head: Foreword. J. Comb. Optim. 3(2-3): 147-148 (1999) |
| 1998 | ||
| 18 | | Ying Xu, Eduard Cerny, Xiaoyu Song, Francisco Corella, Otmane Aït Mohamed: Model Checking for a First-Order Temporal Logic Using Multiway Decision Graphs. CAV 1998: 219-231 |
| 17 | | Ying Xu, Dong Xu, Edward C. Uberbacher: A new method for modeling and solving the protein fold recognition problem (extended abstract). RECOMB 1998: 285-292 |
| 16 | | Ying Xu, Dong Xu, Edward C. Uberbacher: An Efficient Computational Method for Globally Optimal Threading. Journal of Computational Biology 5(3): 597- (1998) |
| 15 | | Ying Xu, Victor Olman, Edward C. Uberbacher: A segmentation algorithm for noisy images: Design and evaluation. Pattern Recognition Letters 19(13): 1213-1224 (1998) |
| 1997 | ||
| 14 | | Ying Xu, Richard J. Mural, Edward C. Uberbacher: Inferring Gene Structures in Genomic Sequences Using Pattern Recognition and Expressed Sequence Tags. ISMB 1997: 344-353 |
| 13 | | Ying Xu, Edward C. Uberbacher: Reference-based gene model prediction on DNA contigs (extended abstract). RECOMB 1997: 330-336 |
| 12 | | Ying Xu, Edward C. Uberbacher: 2D image segmentation using minimum spanning trees. Image Vision Comput. 15(1): 47-57 (1997) |
| 11 | | Ying Xu, Edward C. Uberbacher: Automated Gene Identification in Large-Scale Genomic Sequences. Journal of Computational Biology 4(3): 325-338 (1997) |
| 1996 | ||
| 10 | | K. D. Anon, N. Boulerice, Eduard Cerny, Francisco Corella, Michel Langevin, Xiaoyu Song, Sofiène Tahar, Ying Xu, Zijian Zhou: MDG Tools for the Verification of RTL Designs. CAV 1996: 433-436 |
| 9 | | Ying Xu, Edward C. Uberbacher: Gene Prediction by Pattern Recognition and Homology Search. ISMB 1996: 241-251 |
| 8 | | Ying Xu, Edward C. Uberbacher: A polynomial-time algorithm for a class of protein threading problems. Computer Applications in the Biosciences 12(6): 511-517 (1996) |
| 7 | | Sherri Matis, Ying Xu, Manesh J. Shah, Xiaojun Guan, J. Ralph Einstein, Richard J. Mural, Edward C. Uberbacher: Detection of RNA Polymerase II Promoters and Polyadenylation Sites in Human DNA Sequence. Computers & Chemistry 20(1): 135-140 (1996) |
| 6 | | Harold N. Gabow, Ying Xu: Efficient Theoretic and Practical Algorithms for Linear Matroid Intersection Problems. J. Comput. Syst. Sci. 53(1): 129-147 (1996) |
| 5 | | Ying Xu, Richard J. Mural, Edward C. Uberbacher: An Iterative Algorithm for Correcting Sequencing Errors in DNA Coding Regions. Journal of Computational Biology 3(3): 333-344 (1996) |
| 1995 | ||
| 4 | | Ying Xu, Richard J. Mural, Edward C. Uberbacher: Correcting sequencing errors in DNA coding regions using a dynamic programming approach. Computer Applications in the Biosciences 11(2): 117-124 (1995) |
| 1994 | ||
| 3 | | Ying Xu, Harold N. Gabow: Fast Algorithms for Transversal Matroid Intersection Problems ISAAC 1994: 625-633 |
| 2 | | Ying Xu, Richard J. Mural, Edward C. Uberbacher: Constructing gene models from accurately predicted exons: an application of dynamic programming. Computer Applications in the Biosciences 10(6): 613-623 (1994) |
| 1989 | ||
| 1 | | Harold N. Gabow, Ying Xu: Efficient Algorithms for Independent Assignments on Graphic and Linear Matroids FOCS 1989: 106-111 |
Colors in the list of coauthors
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