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University of Georgia, Athens, GA, USA

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115Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Aabhas S. Agarwal, Brian T. Davis: Prediction in Dynamic SDRAM Controller Policies. SAMOS 2009: 128-138
114Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGuojun Li, Xiaotie Deng, Ying Xu: A polynomial-time approximation scheme for embedding hypergraph in a cycle. ACM Transactions on Algorithms 5(2): (2009)
113Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLQi Liu, Jinling Huang, Huiqing Liu, Ping Wan, Xiuzi Ye, Ying Xu: Analyses of domains and domain fusions in human proto-oncogenes. BMC Bioinformatics 10: (2009)
112Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVictor Olman, Fenglou Mao, Hongwei Wu, Ying Xu: Parallel Clustering Algorithm for Large Data Sets with Applications in Bioinformatics. IEEE/ACM Trans. Comput. Biology Bioinform. 6(2): 344-352 (2009)
111Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGuojun Li, Dongsheng Che, Ying Xu: A Universal operon Predictor for prokaryotic genomes. J. Bioinformatics and Computational Biology 7(1): 19-38 (2009)
110Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLFenglou Mao, PhuongAn Dam, Jacky Chou, Victor Olman, Ying Xu: DOOR: a database for prokaryotic operons. Nucleic Acids Research 37(Database-Issue): 459-463 (2009)
2008
109Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDongsheng Che, Guojun Li, Shane T. Jensen, Jun S. Liu, Ying Xu: PFP: A Computational Framework for Phylogenetic Footprinting in Prokaryotic Genomes. ISBRA 2008: 110-121
108Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGuojun Li, Zhijie Liu, Jun-tao Guo, Ying Xu: An Algorithm for Simultaneous Backbone Threading and Side-Chain Packing. Algorithmica 51(4): 435-450 (2008)
107Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLFengfeng Zhou, Victor Olman, Ying Xu: Barcodes for genomes and applications. BMC Bioinformatics 9: (2008)
106Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJuan Cui, Qi Liu, David Puett, Ying Xu: Computational prediction of human proteins that can be secreted into the bloodstream. Bioinformatics 24(20): 2370-2375 (2008)
105Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLHongwei Wu, Fenglou Mao, Victor Olman, Ying Xu: On application of directons to functional classification of genes in prokaryotes. Computational Biology and Chemistry 32(3): 176-184 (2008)
104Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMinghui Jiang, Ying Xu, Binhai Zhu: Protein Structure-structure Alignment with Discrete FrÉchet Distance. J. Bioinformatics and Computational Biology 6(1): 51-64 (2008)
103Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLKyle Ellrott, Jun-tao Guo, Victor Olman, Ying Xu: Improving the Performance of protein Threading Using Insertion/Deletion Frequency Arrays. J. Bioinformatics and Computational Biology 6(3): 585-602 (2008)
102Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLQi Liu, Victor Olman, Huiqing Liu, Xiuzi Ye, Shilun Qiu, Ying Xu: RNACluster: An integrated tool for RNA secondary structure comparison and clustering. Journal of Computational Chemistry 29(9): 1517-1526 (2008)
2007
101Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMinghui Jiang, Ying Xu, Binhai Zhu: Protein Structure-Structure Alignment with Discrete Fr'echet Distance. APBC 2007: 131-141
100Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDongsheng Che, Jizhen Zhao, Liming Cai, Ying Xu: Operon Prediction in Microbial Genomes Using Decision Tree Approach. CIBCB 2007: 135-142
99Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLHongwei Wu, Fenglou Mao, Victor Olman, Ying Xu: An Algorithm for Hierarchical Classification of Genes of Prokaryotic Genomes. ISBRA 2007: 551-563
98Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGuojun Li, Zhijie Liu, Jun-tao Guo, Ying Xu: An Algorithm for Simultaneous Backbone Threading and Side-Chain Packing. Algorithmica 48(4): 329-342 (2007)
97Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Hui Yu, Hua Cai, Qingjun Liu, Ping Wang: A Novel Integrated Cell-Based Biosensor for Extracellular Electrophysiological Monitoring. I. J. Information Acquisition 4(3): 193-204 (2007)
96Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGuojun Li, Jizhu Lu, Victor Olman, Ying Xu: Prediction of cis-Regulatory Elements: from High-Information Content Analysis to Motif Identification. J. Bioinformatics and Computational Biology 5(4): 817-838 (2007)
2006
95Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLIlham Benyahia, Jean-Yves Potvin, Ying Xu: A Complex Applications Framework Supporting Tolerant Dynamic Vehicle Dispatching. AICCSA 2006: 875-881
94Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Fu-yuan Xu, Sheng-qi Li: A System for Project Distribution Based on the Semantic Matching Method. CIMCA/IAWTIC 2006: 187
93Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Fu-yuan Xu: Research on Context Modeling Based on Ontology. CIMCA/IAWTIC 2006: 188
92Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Fu-yuan Xu: Researching on The Method and Technology of Creating Temporal Categories for an Ontology of Time. CIMCA/IAWTIC 2006: 264
91Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYougang Song, Ying Xu, Brett D. Fleisch: Design and Performance Evaluation of a Proxy-based Java Rewriting Security System. ICDCS 2006: 11
90Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLChunmei Liu, Bo Yan, Yinglei Song, Ying Xu, Liming Cai: Peptide sequence tag-based blind identification of post-translational modifications with point process model. ISMB (Supplement of Bioinformatics) 2006: 307-313
89Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRobin Kramer, Victor Olman, Ying Xu, Dong Xu: DigitalTree: A Tool for Displaying Biological Data in Tree Structure. International Conference on Computational Science (2) 2006: 855-862
88Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLChunmei Liu, Yinglei Song, Bo Yan, Ying Xu, Liming Cai: Fast De novo Peptide Sequencing and Spectral Alignment via Tree Decomposition. Pacific Symposium on Biocomputing 2006: 255-266
87Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLBo Yan, Tong Zhou, Peng Wang, Zhijie Liu, Vincent A. Emanuele II, Victor Olman, Ying Xu: A Point-Process Model for Rapid Identification of Post-Translational Modifications. Pacific Symposium on Biocomputing 2006: 327-338
86Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLXinglai Ji, Ying Xu: libSRES: a C library for stochastic ranking evolution strategy for parameter estimation. Bioinformatics 22(1): 124-126 (2006)
85Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLFengfeng Zhou, Yu Xue, Xuebiao Yao, Ying Xu: CSS-Palm: palmitoylation site prediction with a clustering and scoring strategy (CSS). Bioinformatics 22(7): 894-896 (2006)
84Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJean-Yves Potvin, Ying Xu, Ilham Benyahia: Vehicle routing and scheduling with dynamic travel times. Computers & OR 33: 1129-1137 (2006)
83Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai: Efficient Parameterized Algorithms for Biopolymer Structure-Sequence Alignment. IEEE/ACM Trans. Comput. Biology Bioinform. 3(4): 423-432 (2006)
82Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLZhong Chen, Ying Xu: Structure Prediction of Helical Transmembrane Proteins at Two Length Scales. J. Bioinformatics and Computational Biology 4(2): 317-334 (2006)
81Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVictor Olman, Chindo Hicks, Peng Wang, Ying Xu: Gene Expression Data Analysis in Subtypes of Ovarian Cancer Using Covariance Analysis. J. Bioinformatics and Computational Biology 4(5): 999-1014 (2006)
80Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYu Xue, Fengfeng Zhou, Chuanhai Fu, Ying Xu, Xuebiao Yao: SUMOsp: a web server for sumoylation site prediction. Nucleic Acids Research 34(Web-Server-Issue): 254-257 (2006)
2005
79Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLZhong Chen, Ying Xu: Multi-Scale Hierarchical Structure Prediction of Helical Transmembrane Proteins. CSB 2005: 203-207
78Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLHongwei Wu, Fenglou Mao, Victor Olman, Ying Xu: Accurate Prediction of Orthologous Gene Groups in Microbes. CSB 2005: 73-79
77Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPeng Wang, Bo Yan, Jun-tao Guo, Chindo Hicks, Ying Xu: Structural genomics analysis of alternative splicing and its application in modeling structures of alternatively spliced variants. CSB Workshops 2005: 217-
76Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGuojun Li, Jizhu Lu, Victor Olman, Ying Xu: PROMOCO: a New Program for Prediction of cis Regulatory Elements: From High-Information Content Analysis to Clique Identification. CSB Workshops 2005: 35-36
75Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPhuongAn Dam, Victor Olman, Ying Xu: Improving Operon Prediction in E. coli. CSB Workshops 2005: 69-70
74Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJunfeng Tian, Yue Fu, Ying Xu, Jian-ling Wang: Intrusion Detection Combining Multiple Decision Trees by Fuzzy logic. PDCAT 2005: 256-258
73Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai: Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment. WABI 2005: 376-388
72Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLBo Yan, Chongle Pan, Victor Olman, Robert L. Hettich, Ying Xu: A graph-theoretic approach for the separation of b and y ions in tandem mass spectra. Bioinformatics 21(5): 563-574 (2005)
71Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPei Hao, Wei-Zhong He, Yin Huang, Liang-Xiao Ma, Ying Xu, Hong Xi, Chuan Wang, Bo-Shu Liu, Jin-Miao Wang, Yi-Xue Li, Yang Zhong: MPSS: an integrated database system for surveying a set of proteins. Bioinformatics 21(9): 2142-2143 (2005)
70Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGuojun Li, Ying Xu, Chuanping Chen, Zhenhong Liu: On Connected [g, f +1]-Factors in Graphs. Combinatorica 25(4): 393-405 (2005)
69Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Roch Guérin: On the robustness of router-based denial-of-service (DoS) defense systems. Computer Communication Review 35(3): 47-60 (2005)
68Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Roch Guérin: Individual QoS versus aggregate QoS: a loss performance study. IEEE/ACM Trans. Netw. 13(2): 370-383 (2005)
67Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLZhenQiu Liu, Dechang Chen, Ying Xu, Jian Liu: Logistic support vector machines and their application to gene expression data. IJBRA 1(2): 169-182 (2005)
66Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLZhenQiu Liu, Dechang Chen, Halima Bensmail, Ying Xu: Clustering Gene Expression Data with Kernel Principal Components. J. Bioinformatics and Computational Biology 3(2): 303-316 (2005)
65Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLTema Fridman, Jane Razumovskaya, Nathan Verberkmoes, Gregory B. Hurst, Vladimir Protopopescu, Ying Xu: The Probability Distribution for a Random Match between an Experimental-theoretical Spectral Pair in Tandem Mass Spectrometry. J. Bioinformatics and Computational Biology 3(2): 455-476 (2005)
64Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Liming Cai, Zhiping Weng: Preface. J. Comput. Sci. Technol. 20(4): 433-433 (2005)
63Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLBo Yan, Youxing Qu, Fenglou Mao, Victor Olman, Ying Xu: PRIME: A Mass Spectrum Data Mining Tool for De Nova Sequencing and PTMs Identification. J. Comput. Sci. Technol. 20(4): 483-490 (2005)
62Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLZhi-Zhong Chen, Guohui Lin, Romeo Rizzi, Jianjun Wen, Dong Xu, Ying Xu, Tao Jiang: More Reliable Protein NMR Peak Assignment via Improved 2-Interval Scheduling. Journal of Computational Biology 12(2): 129-146 (2005)
2004
61Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLZhengchang Su, PhuongAn Dam, Victor Olman, Ying Xu: Computational Inference of Transcription Regulation and Response Networks in Synechococcus sp. WH8102. BIBE 2004: 5-8
60Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLBo Yan, Chongle Pan, Victor Olman, Robert L. Hettich, Ying Xu: Separation of Ion Types in Tandem Mass Spectrometry Data Interpretation - A Graph-Theoretic Approach. CSB 2004: 236-244
59Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVictor Olman, Hanchuan Peng, Zhengchang Su, Ying Xu: Mapping of Microbial Pathways through Constrained Mapping of Orthologous Genes. CSB 2004: 363-370
58Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPeng Wang, Zhengchang Su, PhuongAn Dam, Ying Xu: A Knowledge Base for Computational Pathway Reconstruction. CSB 2004: 612-613
57Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPhuongAn Dam, Zhengchang Su, Victor Olman, Ying Xu: In Silico Construction of the Carbon Fixation Pathway in Synechococcus sp. WH8102. CSB 2004: 614-615
56Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLZhengchang Su, PhuongAn Dam, X. Chen, Victor Olman, Tao Jiang, Ying Xu: Computational Construction of Nitrogen Assimilation Pathway in Cyanobacteria Synechococcus sp. WH8102. CSB 2004: 640-641
55Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLFenglou Mao, Zhengchang Su, Victor Olman, David Chuang, Ying Xu: Pathway Mapping with Operon Information: An Integer-Programming Method. CSB 2004: 642-643
54Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVictor Olman, Jizhu Lu, PhuongAn Dam, Zhengchang Su, Ying Xu: CUBIC: Search for Binding Sites. CSB 2004: 666-667
53Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPeng Wang, Zhengchang Su, Jun-tao Guo, Ying Xu: Structural Analysis of FGFR1 Kinase Activation through Molecular Dynamics Simulation. CSB 2004: 700-701
52Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJun-tao Guo, Ying Xu: Molecular Modeling of Full-Length OxyR from Shewanella oneidensis MR-1 and Molecular Dynamics Studies of the Activation Domain. CSB 2004: 708-709
51Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLShu Tao, Kuai Xu, Ying Xu, Teng Fei, Lixin Gao, Roch Guérin, James F. Kurose, Donald F. Towsley, Zhi-Li Zhang: Exploring the Performance Benefits of End-to-End Path Switching. ICNP 2004: 304-315
50Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYouxing Qu, Jun-tao Guo, Victor Olman, Ying Xu: Protein Fold Recognition Through Application of Residual Dipolar Coupling Data. Pacific Symposium on Biocomputing 2004: 459-470
49Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLShu Tao, Kuai Xu, Ying Xu, Teng Fei, Lixin Gao, Roch Guérin, James F. Kurose, Donald F. Towsley, Zhi-Li Zhang: Exploring the performance benefits of end-to-end path switching. SIGMETRICS 2004: 418-419
48Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Xiaoyu Song, Eduard Cerny, Otmane Aït Mohamed: Model Checking for a First-Order Temporal Logic Using Multiway Decision Graphs (MDGs). Comput. J. 47(1): 71-84 (2004)
47Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Brett D. Fleisch: NFS-cc: tuning NFS for concurrent read sharing. IJHPCN 1(4): 203-213 (2004)
46Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJinbo Xu, Ming Li, Ying Xu: Protein Threading by Linear Programming: Theoretical Analysis and Computational Results. J. Comb. Optim. 8(4): 403-418 (2004)
45no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJun-tao Guo, Kyle Ellrott, Won Jae Chung, Dong Xu, Sergei Passovets, Ying Xu: PROSPECT-PSPP: an automatic computational pipeline for protein structure prediction. Nucleic Acids Research 32(Web-Server-Issue): 522-525 (2004)
2003
44Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYu Chen, Trupti Joshi, Ying Xu, Dong Xu: Towards Automated Derivation of Biological Pathways Using High-Throughput Biological Data. BIBE 2003: 18-25
43Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLManesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu: A Computational Pipeline for Protein Structure Prediction and Analysis at Genome Scale. BIBE 2003: 3-10
42Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJane Razumovskaya, Victor Olman, Dong Xu, Edward C. Uberbacher, Nathan Verberkmoes, Ying Xu: A Computational Method for Assessing Peptide-Identification Reliability in Tandem Mass Spectrometry Analysis with SEQUEST. CSB 2003: 421-423
41Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVictor Olman, Dong Xu, Ying Xu: CUBIC: Identification of Regulatory Binding Sites Through Data Clustering. CSB 2003: 448-449
40Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLZhengchang Su, PhuongAn Dam, X. Chen, Victor Olman, Tao Jiang, B. Palenik, Ying Xu: Computational Inference of Regulatory Pathways in Microbes. CSB 2003: 631-633
39Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLZhi-Zhong Chen, Tao Jiang, Guohui Lin, Romeo Rizzi, Jianjun Wen, Dong Xu, Ying Xu: More Reliable Protein NMR Peak Assignment via Improved 2-Interval Scheduling. ESA 2003: 580-592
38Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJinbo Xu, Ming Li, Guo-Hui Lin, Dongsup Kim, Ying Xu: Protein Threading by Linear Programming. Pacific Symposium on Biocomputing 2003: 264-275
37Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVictor Olman, Dong Xu, Ying Xu: Identification of Regulatory Binding Sites Using Minimum Spanning Trees. Pacific Symposium on Biocomputing 2003: 327-338
36Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Roch Guérin: On Evaluating Loss Performance Deviation: A Simple Tool and Its Practical Implications. QoS-IP 2003: 1-18
35no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLManesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu: A computational pipeline for protein structure prediction and analysis at genome scale. Bioinformatics 19(15): 1985-1996 (2003)
34Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLHuandong Sun, Ming Li, Ying Xu: MOLVIE: an interactive visualization environment for molecular structures. Computer Methods and Programs in Biomedicine 71(1): 85-90 (2003)
33Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVictor Olman, Dong Xu, Ying Xu: Cubic: Identification of Regulatory Binding Sites through Data Clustering. J. Bioinformatics and Computational Biology 1(1): 21-40 (2003)
32Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJinbo Xu, Ming Li, Dongsup Kim, Ying Xu: Raptor: Optimal Protein Threading by Linear Programming. J. Bioinformatics and Computational Biology 1(1): 95-118 (2003)
31Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGuohui Lin, Dong Xu, Zhi-Zhong Chen, Tao Jiang, Jianjun Wen, Ying Xu: Computational Assignment of Protein Backbone Nmr Peaks Byefficient Bounding and Filtering. J. Bioinformatics and Computational Biology 1(2): 387-410 (2003)
30Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLZhi-Zhong Chen, Tao Jiang, Guo-Hui Lin, Jianjun Wen, Dong Xu, Jinbo Xu, Ying Xu: Approximation algorithms for NMR spectral peak assignment. Theor. Comput. Sci. 1-3(299): 211-229 (2003)
2002
29Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGuo-Hui Lin, Dong Xu, Zhi-Zhong Chen, Tao Jiang, Jianjun Wen, Ying Xu: An Efficient Branch-and-Bound Algorithm for the Assignment of Protein Backbone NMR Peaks. CSB 2002: 165-174
28Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Roch Guérin: Individual QoS versus Aggregate QoS: A Loss Performance Study. INFOCOM 2002
27Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLZhi-Zhong Chen, Tao Jiang, Guo-Hui Lin, Jianjun Wen, Dong Xu, Ying Xu: Improved Approximation Algorithms for NMR Spectral Peak Assignment. WABI 2002: 82-96
26no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDong Xu, Guangshan Li, Liyou Wu, Jizhong Zhou, Ying Xu: PRIMEGENS: robust and efficient design of gene-specific probes for microarray analysis. Bioinformatics 18(11): 1432-1437 (2002)
25no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Victor Olman, Dong Xu: Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees. Bioinformatics 18(4): 536-545 (2002)
2000
24Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Dong Xu, Oakley H. Crawford, J. Ralph Einstein, Engin Serpersu: Protein structure determination using protein threading and sparse NMR data (extended abstract). RECOMB 2000: 299-307
23no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Dong Xu, Harold N. Gabow: Protein domain decomposition using a graph-theoretic approach. Bioinformatics 16(12): 1091-1104 (2000)
22no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDong Xu, Michael A. Unseren, Ying Xu, Edward C. Uberbacher: Sequence-structure specificity of a knowledge based energy function at the secondary structure level. Bioinformatics 16(3): 269-285 (2000)
21no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Dong Xu, Oakley H. Crawford, J. Ralph Einstein: A Computational Method for NMR-Constrained Protein Threading. Journal of Computational Biology 7(3-4): 449-467 (2000)
1999
20Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Eduard Cerny, Allan Silburt, A. Coady, Ying Liu, Philip Pownall: Practical Application of Formal Verification Techniques on a Frame Mux/Demux Chip from Nortel Semiconductors. CHARME 1999: 110-124
19no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Satoru Miyano, Tom Head: Foreword. J. Comb. Optim. 3(2-3): 147-148 (1999)
1998
18Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Eduard Cerny, Xiaoyu Song, Francisco Corella, Otmane Aït Mohamed: Model Checking for a First-Order Temporal Logic Using Multiway Decision Graphs. CAV 1998: 219-231
17Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Dong Xu, Edward C. Uberbacher: A new method for modeling and solving the protein fold recognition problem (extended abstract). RECOMB 1998: 285-292
16no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Dong Xu, Edward C. Uberbacher: An Efficient Computational Method for Globally Optimal Threading. Journal of Computational Biology 5(3): 597- (1998)
15Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Victor Olman, Edward C. Uberbacher: A segmentation algorithm for noisy images: Design and evaluation. Pattern Recognition Letters 19(13): 1213-1224 (1998)
1997
14no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Richard J. Mural, Edward C. Uberbacher: Inferring Gene Structures in Genomic Sequences Using Pattern Recognition and Expressed Sequence Tags. ISMB 1997: 344-353
13Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Edward C. Uberbacher: Reference-based gene model prediction on DNA contigs (extended abstract). RECOMB 1997: 330-336
12Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Edward C. Uberbacher: 2D image segmentation using minimum spanning trees. Image Vision Comput. 15(1): 47-57 (1997)
11no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Edward C. Uberbacher: Automated Gene Identification in Large-Scale Genomic Sequences. Journal of Computational Biology 4(3): 325-338 (1997)
1996
10Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLK. D. Anon, N. Boulerice, Eduard Cerny, Francisco Corella, Michel Langevin, Xiaoyu Song, Sofiène Tahar, Ying Xu, Zijian Zhou: MDG Tools for the Verification of RTL Designs. CAV 1996: 433-436
9no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Edward C. Uberbacher: Gene Prediction by Pattern Recognition and Homology Search. ISMB 1996: 241-251
8no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Edward C. Uberbacher: A polynomial-time algorithm for a class of protein threading problems. Computer Applications in the Biosciences 12(6): 511-517 (1996)
7Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLSherri Matis, Ying Xu, Manesh J. Shah, Xiaojun Guan, J. Ralph Einstein, Richard J. Mural, Edward C. Uberbacher: Detection of RNA Polymerase II Promoters and Polyadenylation Sites in Human DNA Sequence. Computers & Chemistry 20(1): 135-140 (1996)
6no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLHarold N. Gabow, Ying Xu: Efficient Theoretic and Practical Algorithms for Linear Matroid Intersection Problems. J. Comput. Syst. Sci. 53(1): 129-147 (1996)
5no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Richard J. Mural, Edward C. Uberbacher: An Iterative Algorithm for Correcting Sequencing Errors in DNA Coding Regions. Journal of Computational Biology 3(3): 333-344 (1996)
1995
4no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Richard J. Mural, Edward C. Uberbacher: Correcting sequencing errors in DNA coding regions using a dynamic programming approach. Computer Applications in the Biosciences 11(2): 117-124 (1995)
1994
3Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Harold N. Gabow: Fast Algorithms for Transversal Matroid Intersection Problems ISAAC 1994: 625-633
2no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYing Xu, Richard J. Mural, Edward C. Uberbacher: Constructing gene models from accurately predicted exons: an application of dynamic programming. Computer Applications in the Biosciences 10(6): 613-623 (1994)
1989
1no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLHarold N. Gabow, Ying Xu: Efficient Algorithms for Independent Assignments on Graphic and Linear Matroids FOCS 1989: 106-111

Coauthor Index

1Aabhas S. Agarwal [115]
2K. D. Anon [10]
3Halima Bensmail [66]
4Ilham Benyahia [84] [95]
5N. Boulerice [10]
6Hua Cai [97]
7Liming Cai [64] [73] [83] [88] [90] [100]
8Eduard Cerny [10] [18] [20] [48]
9Dongsheng Che [100] [109] [111]
10Chuanping Chen [70]
11Dechang Chen [66] [67]
12X. Chen [40] [56]
13Yu Chen [44]
14Zhi-Zhong Chen [27] [29] [30] [31] [39] [62]
15Zhong Chen [79] [82]
16Jacky Chou [110]
17David Chuang [55]
18Won Jae Chung [45]
19A. Coady [20]
20Francisco Corella [10] [18]
21Oakley H. Crawford [21] [24]
22Juan Cui [106]
23PhuongAn Dam [40] [54] [56] [57] [58] [61] [75] [110]
24Brian T. Davis [115]
25Xiaotie Deng [114]
26J. Ralph Einstein [7] [21] [24]
27Kyle Ellrott [35] [43] [45] [103]
28Vincent A. Emanuele II [87]
29Teng Fei [49] [51]
30Brett D. Fleisch [47] [91]
31Tema Fridman [65]
32Chuanhai Fu [80]
33Yue Fu [74]
34Harold N. Gabow [1] [3] [6] [23]
35Lixin Gao [49] [51]
36Xiaojun Guan [7]
37Roch Guérin [28] [36] [49] [51] [68] [69]
38Jun-tao Guo [45] [50] [52] [53] [77] [98] [103] [108]
39Pei Hao [71]
40Wei-Zhong He [71]
41Tom Head [19]
42Robert L. Hettich [60] [72]
43Chindo Hicks [77] [81]
44Jinling Huang [113]
45Xiuzhen Huang [73] [83]
46Yin Huang [71]
47Gregory B. Hurst [65]
48Shane T. Jensen [109]
49Xinglai Ji [86]
50Minghui Jiang [101] [104]
51Tao Jiang [27] [29] [30] [31] [39] [40] [56] [62]
52Trupti Joshi [44]
53Dongsup Kim [32] [35] [38] [43]
54Robin Kramer [89]
55James F. Kurose (Jim Kurose) [49] [51]
56Michel Langevin [10]
57Guangshan Li [26]
58Guojun Li [70] [76] [96] [98] [108] [109] [111] [114]
59Ming Li [32] [34] [38] [46]
60Sheng-qi Li [94]
61Yixue Li (Yi-Xue Li) [71]
62Guohui Lin (Guo-Hui Lin) [27] [29] [30] [31] [38] [39] [62]
63Bo-Shu Liu [71]
64Chunmei Liu [73] [83] [88] [90]
65Huiqing Liu [102] [113]
66Jian Liu [67]
67Jun S. Liu [109]
68Qi Liu [102] [106] [113]
69Qingjun Liu [97]
70Ying Liu [20]
71ZhenQiu Liu [66] [67]
72Zhenhong Liu [70]
73Zhijie Liu [87] [98] [108]
74Philip F. LoCascio [35] [43]
75Jizhu Lu [54] [76] [96]
76Liang-Xiao Ma [71]
77Russell L. Malmberg [73] [83]
78Fenglou Mao [55] [63] [78] [99] [105] [110] [112]
79Sherri Matis [7]
80Satoru Miyano [19]
81Otmane Aït Mohamed [18] [48]
82Richard J. Mural [2] [4] [5] [7] [14]
83Victor Olman [15] [25] [33] [37] [40] [41] [42] [50] [54] [55] [56] [57] [59] [60] [61] [63] [72] [75] [76] [78] [81] [87] [89] [96] [99] [102] [103] [105] [107] [110] [112]
84B. Palenik [40]
85Chongle Pan [60] [72]
86Sergei Passovets [35] [43] [45]
87Hanchuan Peng [59]
88Jean-Yves Potvin [84] [95]
89Philip Pownall [20]
90Vladimir Protopopescu [65]
91David Puett [106]
92Shilun Qiu [102]
93Youxing Qu [50] [63]
94Jane Razumovskaya [42] [65]
95Romeo Rizzi [39] [62]
96Engin Serpersu [24]
97Manesh J. Shah [7] [35] [43]
98Allan Silburt [20]
99Xiaoyu Song [10] [18] [48]
100Yinglei Song [73] [83] [88] [90]
101Yougang Song [91]
102Zhengchang Su [40] [53] [54] [55] [56] [57] [58] [59] [61]
103Huandong Sun [34]
104Sofiène Tahar [10]
105Shu Tao [49] [51]
106Junfeng Tian [74]
107Donald F. Towsley [49] [51]
108Edward C. Uberbacher [2] [4] [5] [7] [8] [9] [11] [12] [13] [14] [15] [16] [17] [22] [42]
109Michael A. Unseren [22]
110Nathan Verberkmoes [42] [65]
111Inna Vokler [35] [43]
112Ping Wan [113]
113Chuan Wang [71]
114Jian-ling Wang [74]
115Jin-Miao Wang [71]
116Li Wang [35] [43]
117Peng Wang [53] [58] [77] [81] [87]
118Ping Wang [97]
119Jianjun Wen [27] [29] [30] [31] [39] [62]
120Zhiping Weng [64]
121Hongwei Wu [78] [99] [105] [112]
122Liyou Wu [26]
123Hong Xi [71]
124Dong Xu [16] [17] [21] [22] [23] [24] [25] [26] [27] [29] [30] [31] [33] [35] [37] [39] [41] [42] [43] [44] [45] [62] [89]
125Fu-yuan Xu [92] [93] [94]
126Jinbo Xu [30] [32] [38] [46]
127Kuai Xu [49] [51]
128Yu Xue [80] [85]
129Bo Yan [60] [63] [72] [77] [87] [88] [90]
130Xuebiao Yao [80] [85]
131Xiuzi Ye [102] [113]
132Hui Yu [97]
133Zhi-Li Zhang [49] [51]
134Jizhen Zhao [100]
135Yang Zhong [71]
136Fengfeng Zhou [80] [85] [107]
137Jizhong Zhou [26]
138Tong Zhou [87]
139Zijian Zhou [10]
140Binhai Zhu [101] [104]

Colors in the list of coauthors

Copyright © Sat Nov 7 19:26:18 2009 by Michael Ley (ley@uni-trier.de)