Olli Yli-Harja

	2009
26		Xiaofeng Dai, Timo Erkkilä, Olli Yli-Harja, Harri Lähdesmäki: A joint finite mixture model for clustering genes from independent Gaussian and beta distributed data. BMC Bioinformatics 10: (2009)
25		Xiaofeng Dai, Olli Yli-Harja, Andre S. Ribeiro: Determining noisy attractors of delayed stochastic gene regulatory networks from multiple data sources. Bioinformatics 25(18): 2362-2368 (2009)
	2008
24		Pekka Ruusuvuori, Jenni Seppälä, Timo Erkkilä, Antti Lehmussola, Jaakko A. Puhakka, Olli Yli-Harja: Efficient automated method for image-based classification of microbial cells. ICPR 2008: 1-4
23		Alireza Akhbardeh, Nikhil, Perttu E. Koskinen, Olli Yli-Harja: Towards the experimental evaluation of novel supervised fuzzy adaptive resonance theory for pattern classification. Pattern Recognition Letters 29(8): 1082-1093 (2008)
	2007
22		Miika Ahdesmäki, Harri Lähdesmäki, Andrew Gracey, Ilya Shmulevich, Olli Yli-Harja: Robust regression for periodicity detection in non-uniformly sampled time-course gene expression data. BMC Bioinformatics 8: (2007)
21		Antti Lehmussola, Pekka Ruusuvuori, J. Selinummi, Heikki Huttunen, Olli Yli-Harja: Computational Framework for Simulating Fluorescence Microscope Images With Cell Populations. IEEE Trans. Med. Imaging 26(7): 1010-1016 (2007)
	2006
20		Matti Nykter, Tommi Aho, Miika Ahdesmäki, Pekka Ruusuvuori, Antti Lehmussola, Olli Yli-Harja: Simulation of microarray data with realistic characteristics. BMC Bioinformatics 7: 349 (2006)
19		Antti Lehmussola, Pekka Ruusuvuori, Olli Yli-Harja: Evaluating the performance of microarray segmentation algorithms. Bioinformatics 22(23): 2910-2917 (2006)
18		Antti Saarinen, Marja-Leena Linne, Olli Yli-Harja: Modeling single neuron behavior using stochastic differential equations. Neurocomputing 69(10-12): 1091-1096 (2006)
17		Antti Pettinen, Olli Yli-Harja, Marja-Leena Linne: Comparison of automated parameter estimation methods for neuronal signaling networks. Neurocomputing 69(10-12): 1371-1374 (2006)
16		Harri Lähdesmäki, Sampsa Hautaniemi, Ilya Shmulevich, Olli Yli-Harja: Relationships between probabilistic Boolean networks and dynamic Bayesian networks as models of gene regulatory networks. Signal Processing 86(4): 814-834 (2006)
	2005
15		Antti Lehmussola, Pekka Ruusuvuori, Olli Yli-Harja: Exploring subjective image quality through isopreference curves. ICIP (1) 2005: 413-416
14		Miika Ahdesmäki, Harri Lähdesmäki, Ronald K. Pearson, Heikki Huttunen, Olli Yli-Harja: Robust detection of periodic time series measured from biological systems. BMC Bioinformatics 6: 117 (2005)
13		Harri Lähdesmäki, Ilya Shmulevich, Valerie Dunmire, Olli Yli-Harja, Wei Zhang: In silico microdissection of microarray data from heterogeneous cell populations. BMC Bioinformatics 6: 54 (2005)
12		Antti Pettinen, Tommi Aho, Olli-Pekka Smolander, Tiina Manninen, Antti Saarinen, Kaisa-Leena Taattola, Olli Yli-Harja, Marja-Leena Linne: Simulation tools for biochemical networks: evaluation of performance and usability. Bioinformatics 21(3): 357-363 (2005)
11		Antti Niemistö, Valerie Dunmire, Olli Yli-Harja, Wei Zhang, Ilya Shmulevich: Robust quantification of in vitro angiogenesis through image analysis. IEEE Trans. Med. Imaging 24(4): 549-553 (2005)
	2003
10		Ronald K. Pearson, Harri Lähdesmäki, Heikki Huttunen, Olli Yli-Harja: Detecting Periodicity in Nonideal Datasets. SDM 2003
9		Reija Autio, Sampsa Hautaniemi, Päivikki Kauraniemi, Olli Yli-Harja, Jaakko Astola, Maija Wolf, Anne Kallioniemi: CGH-Plotter: MATLAB toolbox for CGH-data analysis. Bioinformatics 19(13): 1714-1715 (2003)
8		Sampsa Hautaniemi, Henrik Edgren, Petri Vesanen, Maija Wolf, Anna-Kaarina Järvinen, Olli Yli-Harja, Jaakko Astola, Olli-P. Kallioniemi, Outi Monni: A novel strategy for microarray quality control using Bayesian networks. Bioinformatics 19(16): 2031-2038 (2003)
7		Harri Lähdesmäki, Ilya Shmulevich, Olli Yli-Harja: On Learning Gene Regulatory Networks Under the Boolean Network Model. Machine Learning 52(1-2): 147-167 (2003)
6		Sampsa Hautaniemi, Olli Yli-Harja, Jaakko Astola, Päivikki Kauraniemi, Anne Kallioniemi, Maija Wolf, Jimmy Ruiz, Spyro Mousses, Olli-P. Kallioniemi: Analysis and Visualization of Gene Expression Microarray Data in Human Cancer Using Self-Organizing Maps. Machine Learning 52(1-2): 45-66 (2003)
5		Harri Lähdesmäki, Heikki Huttunen, Tommi Aho, Marja-Leena Linne, Jari Niemi, Juha Kesseli, Ronald K. Pearson, Olli Yli-Harja: Estimation and inversion of the effects of cell population asynchrony in gene expression time-series. Signal Processing 83(4): 835-858 (2003)
	2001
4		Pertti Koivisto, Olli Yli-Harja, Antti Niemistö, Ilya Shmulevich: Breakdown probabilities of recursive stack filters. Signal Processing 81(1): 227-231 (2001)
3		Olli Yli-Harja, Pertti Koivisto, J. Andrew Bangham, Gavin C. Cawley, Richard Harvey, Ilya Shmulevich: Simplified implementation of the recursive median sieve. Signal Processing 81(7): 1565-1570 (2001)
	1999
2		Olli Yli-Harja, Ilya Shmulevich, Kjell Lemström: Graph-based smoothing of class data with applications in musical key finding. NSIP 1999: 311-315
1		Olli Yli-Harja, J. Andrew Bangham, Richard Harvey, Richard V. Aldridge: Correlation properties of cascaded recursive median filters. NSIP 1999: 491-495

Coauthor Index

1	Miika Ahdesmäki	[14] [20] [22]
2	Tommi Aho	[5] [12] [20]
3	Alireza Akhbardeh	[23]
4	Richard V. Aldridge	[1]
5	Jaakko Astola	[6] [8] [9]
6	Reija Autio	[9]
7	J. Andrew Bangham	[1] [3]
8	Gavin C. Cawley	[3]
9	Xiaofeng Dai	[25] [26]
10	Valerie Dunmire	[11] [13]
11	Henrik Edgren	[8]
12	Timo Erkkilä	[24] [26]
13	Andrew Gracey	[22]
14	Richard Harvey	[1] [3]
15	Sampsa Hautaniemi	[6] [8] [9] [16]
16	Heikki Huttunen	[5] [10] [14] [21]
17	Anna-Kaarina Järvinen	[8]
18	Anne Kallioniemi	[6] [9]
19	Olli-P. Kallioniemi	[6] [8]
20	Päivikki Kauraniemi	[6] [9]
21	Juha Kesseli	[5]
22	Pertti Koivisto	[3] [4]
23	Perttu E. Koskinen	[23]
24	Harri Lähdesmäki	[5] [7] [10] [13] [14] [16] [22] [26]
25	Antti Lehmussola	[15] [19] [20] [21] [24]
26	Kjell Lemström	[2]
27	Marja-Leena Linne	[5] [12] [17] [18]
28	Tiina Manninen	[12]
29	Outi Monni	[8]
30	Spyro Mousses	[6]
31	Jari Niemi	[5]
32	Antti Niemistö	[4] [11]
33	Nikhil	[23]
34	Matti Nykter	[20]
35	Ronald K. Pearson	[5] [10] [14]
36	Antti Pettinen	[12] [17]
37	Jaakko A. Puhakka	[24]
38	Andre S. Ribeiro	[25]
39	Jimmy Ruiz	[6]
40	Pekka Ruusuvuori	[15] [19] [20] [21] [24]
41	Antti Saarinen	[12] [18]
42	J. Selinummi	[21]
43	Jenni Seppälä	[24]
44	Ilya Shmulevich	[2] [3] [4] [7] [11] [13] [16] [22]
45	Olli-Pekka Smolander	[12]
46	Kaisa-Leena Taattola	[12]
47	Petri Vesanen	[8]
48	Maija Wolf	[6] [8] [9]
49	Wei Zhang	[11] [13]

Colors in the list of coauthors