Hongyu Zhao

	2009
34		Debayan Datta, Hongyu Zhao: Effect of false positive and false negative rates on inference of binding target conservation across different conditions and species from ChIP-chip data. BMC Bioinformatics 10: (2009)
33		Joshua N. Sampson, Hongyu Zhao: Genotyping and inflated type I error rate in genome-wide association case/control studies. BMC Bioinformatics 10: (2009)
32		Kun He, Xueyong Li, Junli Zhou, Xingwang Deng, Hongyu Zhao, Jingchu Luo: NTAP: for NimbleGen tiling array ChIP-chip data analysis. Bioinformatics 25(14): 1838-1840 (2009)
	2008
31		Hongqi Gong, Lihua Li, Hongyu Zhao: Automatic Labeling System of Words in Text Materials for College English Tests. ISIP 2008: 209-213
30		Herbert Pang, Hongyu Zhao: Building pathway clusters from Random Forests classification using class votes. BMC Bioinformatics 9: (2008)
29		Jiguo Cao, Hongyu Zhao: Estimating dynamic models for gene regulation networks. Bioinformatics 24(14): 1619-1624 (2008)
28		Liang Chen, Tiejun Tong, Hongyu Zhao: Considering dependence among genes and markers for false discovery control in eQTL mapping. Bioinformatics 24(18): 2015-2022 (2008)
27		Debayan Datta, Hongyu Zhao: Statistical methods to infer cooperative binding among transcription factors in Saccharomyces cerevisiae. Bioinformatics 24(4): 545-552 (2008)
	2007
26		Weichuan Yu, Junfeng Liu, Chris Colangelo, Erol Gulcicek, Hongyu Zhao: A new protocol of analyzing isotope-coded affinity tag data from high-resolution LC-MS spectrometry. Computational Biology and Chemistry 31(3): 215-221 (2007)
25		Valentin Dinu, Hongyu Zhao, Perry L. Miller: Integrating domain knowledge with statistical and data mining methods for high-density genomic SNP disease association analysis. Journal of Biomedical Informatics 40(6): 750-760 (2007)
	2006
24		Baolin Wu, Nianjun Liu, Hongyu Zhao: PSMIX: an R package for population structure inference via maximum likelihood method. BMC Bioinformatics 7: 317 (2006)
23		Herbert Pang, Aiping Lin, Matthew Holford, Bradley E. Enerson, Bin Lu, Michael P. Lawton, Eugenia Floyd, Hongyu Zhao: Pathway analysis using random forests classification and regression. Bioinformatics 22(16): 2028-2036 (2006)
22		Weichuan Yu, Baolin Wu, Ning Lin, Kathy Stone, Kenneth Williams, Hongyu Zhao: Detecting and aligning peaks in mass spectrometry data with applications to MALDI. Computational Biology and Chemistry 30(1): 27-38 (2006)
21		Weichuan Yu, Xiaoye Li, Junfeng Liu, Baolin Wu, Kenneth R. Williams, Hongyu Zhao: Multiple Peak Alignment in Sequential Data Analysis: A Scale-Space-Based Approach. IEEE/ACM Trans. Comput. Biology Bioinform. 3(3): 208-219 (2006)
	2005
20		Weichuan Yu, Xiaoye Li, Hongyu Zhao: Aligning Peaks Across Multiple Mass Spectrometry Data Sets Using A Scale-Space Based Approach. CSB Workshops 2005: 126-127
19		Nan Lin, Hongyu Zhao: Are scale-free networks robust to measurement errors? BMC Bioinformatics 6: 119 (2005)
18		Kui Zhang, Fengzhu Sun, Hongyu Zhao: HAPLORE: a program for haplotype reconstruction in general pedigrees without recombination. Bioinformatics 21(1): 90-103 (2005)
17		Yin Liu, Nianjun Liu, Hongyu Zhao: Inferring protein-protein interactions through high-throughput interaction data from diverse organisms. Bioinformatics 21(15): 3279-3285 (2005)
16		Tao Huang, Baolin Wu, Paul Lizardi, Hongyu Zhao: Detection of DNA copy number alterations using penalized least squares regression. Bioinformatics 21(20): 3811-3817 (2005)
15		Liang Chen, Hongyu Zhao: Negative correlation between compositional symmetries and local recombination rates. Bioinformatics 21(21): 3951-3958 (2005)
14		Zhong Guan, Hongyu Zhao: A semiparametric approach for marker gene selection based on gene expression data. Bioinformatics 21(4): 529-536 (2005)
13		Matthew Holford, Naixin Li, Prakash M. Nadkarni, Hongyu Zhao: VitaPad: visualization tools for the analysis of pathway data. Bioinformatics 21(8): 1596-1602 (2005)
12		Yinglei Lai, Hongyu Zhao: A statistical method to detect chromosomal regions with DNA copy number alterations using SNP-array-based CGH data. Computational Biology and Chemistry 29(1): 47-54 (2005)
11		Yinglei Lai, Hongyu Zhao: Erratum to "A statistical method to detect chromosomal regions with DNA copy number alterations using SNP-array-based CGH data": [Comput. Biol. Chem. 29(2005) 47-54] Computational Biology and Chemistry 29(3): 258 (2005)
10		Liang Chen, Hongyu Zhao: Integrating mRNA Decay Information into Co-Regulation Study. J. Comput. Sci. Technol. 20(4): 434-438 (2005)
	2004
9		Michael V. Osier, Hongyu Zhao, Kei-Hoi Cheung: Handling multiple testing while interpreting microarrays with the Gene Ontology Database. BMC Bioinformatics 5: 124 (2004)
8		Nan Lin, Baolin Wu, Ronald Jansen, Mark Gerstein, Hongyu Zhao: Information assessment on predicting protein-protein interactions. BMC Bioinformatics 5: 154 (2004)
7		Yin Liu, Hongyu Zhao: A computational approach for ordering signal transduction pathway components from genomics and proteomics Data. BMC Bioinformatics 5: 158 (2004)
6		Yinglei Lai, Baolin Wu, Liang Chen, Hongyu Zhao: A statistical method for identifying differential gene-gene co-expression patterns. Bioinformatics 20(17): 3146-3155 (2004)
5		Wenming Zhao, Jing Wang, Ximiao He, Xiaobing Huang, Yongzhi Jiao, Mingtao Dai, Shulin Wei, Jian Fu, Ye Chen, Xiaoyu Ren, Yong Zhang, Peixiang Ni, Jianguo Zhang, Songgang Li, Jian Wang, Gane Ka-Shu Wong, Hongyu Zhao, Jun Yu, Huanming Yang, Jun Wang: BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics. Nucleic Acids Research 32(Database-Issue): 377-382 (2004)
	2003
4		Deyun Pan, Ning Sun, Kei-Hoi Cheung, Zhong Guan, Ligeng Ma, Matthew Holford, Xingwang Deng, Hongyu Zhao: PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis. BMC Bioinformatics 4: 56 (2003)
3		Baolin Wu, Tom Abbott, David Fishman, Walter McMurray, Gil Mor, Kathryn Stone, David Ward, Kenneth Williams, Hongyu Zhao: Comparison of statistical methods for classification of ovarian cancer using mass spectrometry data. Bioinformatics 19(13): 1636-1643 (2003)
	2002
2		Shuanglin Zhang, Kui Zhang, Jinming Li, Hongyu Zhao: On a Family-Based Haplotype Pattern Mining Method for Linkage Disequilibrium Mapping. Pacific Symposium on Biocomputing 2002: 100-111
	2001
1		Hongyu Zhao, Feng Liang: On Relationship Inference Using Gamete Identity by Descent Data. Journal of Computational Biology 8(2): 191-200 (2001)

Coauthor Index

1	Tom Abbott	[3]
2	Jiguo Cao	[29]
3	Liang Chen	[6] [10] [15] [28]
4	Ye Chen	[5]
5	Kei-Hoi Cheung	[4] [9]
6	Chris Colangelo	[26]
7	Mingtao Dai	[5]
8	Debayan Datta	[27] [34]
9	Xingwang Deng	[4] [32]
10	Valentin Dinu	[25]
11	Bradley E. Enerson	[23]
12	David Fishman	[3]
13	Eugenia Floyd	[23]
14	Jian Fu	[5]
15	Mark Gerstein (Mark B. Gerstein)	[8]
16	Hongqi Gong	[31]
17	Zhong Guan	[4] [14]
18	Erol Gulcicek	[26]
19	Kun He	[32]
20	Ximiao He	[5]
21	Matthew Holford	[4] [13] [23]
22	Tao Huang	[16]
23	Xiaobing Huang	[5]
24	Ronald Jansen	[8]
25	Yongzhi Jiao	[5]
26	Yinglei Lai	[6] [11] [12]
27	Michael P. Lawton	[23]
28	Jinming Li	[2]
29	Lihua Li	[31]
30	Naixin Li	[13]
31	Songgang Li	[5]
32	Xiaoye Li	[20] [21]
33	Xueyong Li	[32]
34	Feng Liang	[1]
35	Aiping Lin	[23]
36	Nan Lin	[8] [19]
37	Ning Lin	[22]
38	Junfeng Liu	[21] [26]
39	Nianjun Liu	[17] [24]
40	Yin Liu	[7] [17]
41	Paul Lizardi	[16]
42	Bin Lu	[23]
43	Jingchu Luo	[32]
44	Ligeng Ma	[4]
45	Walter McMurray	[3]
46	Perry L. Miller	[25]
47	Gil Mor	[3]
48	Prakash M. Nadkarni	[13]
49	Peixiang Ni	[5]
50	Michael V. Osier	[9]
51	Deyun Pan	[4]
52	Herbert Pang	[23] [30]
53	Xiaoyu Ren	[5]
54	Joshua N. Sampson	[33]
55	Kathryn Stone	[3]
56	Kathy Stone	[22]
57	Fengzhu Sun	[18]
58	Ning Sun	[4]
59	Tiejun Tong	[28]
60	Jian Wang	[5]
61	Jun Wang	[5]
62	Jing Wang	[5]
63	David Ward	[3]
64	Shulin Wei	[5]
65	Kenneth Williams	[3] [22]
66	Kenneth R. Williams	[21]
67	Gane Ka-Shu Wong	[5]
68	Baolin Wu	[3] [6] [8] [16] [21] [22] [24]
69	Huanming Yang	[5]
70	Jun Yu	[5]
71	Weichuan Yu	[20] [21] [22] [26]
72	Jianguo Zhang	[5]
73	Kui Zhang	[2] [18]
74	Shuanglin Zhang	[2]
75	Yong Zhang	[5]
76	Wenming Zhao	[5]
77	Junli Zhou	[32]

Colors in the list of coauthors