Volume 3, 2008
- Gang Wu, Ming-Yang Kao, Guohui Lin, Jia-Huai You:
Reconstructing phylogenies from noisy quartets in polynomial time with a high success probability.
- Malik Yousef, Segun Jung, Louise C. Showe, Michael K. Showe:
Learning from positive examples when the negative class is undetermined- microRNA gene identification.
- Simon Moxon, Vincent Moulton, Jan T. Kim:
A scoring matrix approach to detecting miRNA target sites.
- Gundolf Schenk, Thomas Margraf, Andrew E. Torda:
Protein sequence and structure alignments within one framework.
- Kord Eickmeyer, Peter Huggins, Lior Pachter, Ruriko Yoshida:
On the optimality of the neighbor-joining algorithm.
- Amarendran R. Subramanian, Michael Kaufmann, Burkhard Morgenstern:
DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment.
- Andreas W. M. Dress, Christoph Flamm, Guido Fritzsch, Stefan Grünewald, Matthias Kruspe, Sonja J. Prohaska, Peter F. Stadler:
Noisy: Identification of problematic columns in multiple sequence alignments.
- Koji Kadota, Yuji Nakai, Kentaro Shimizu:
A weighted average difference method for detecting differentially expressed genes from microarray data.
- Peter Meinicke, Thomas Lingner, Alexander Kaever, Kirstin Feussner, Cornelia Göbel, Ivo Feussner, Petr Karlovsky, Burkhard Morgenstern:
Metabolite-based clustering and visualization of mass spectrometry data using one-dimensional self-organizing maps.
- Eivind Tøstesen:
A stitch in time: Efficient computation of genomic DNA melting bubbles.
- Hans Binder, Knut Krohn, Stephan Preibisch:
"Hook"-calibration of GeneChip-microarrays: Chip characteristics and expression measures.
- Hans Binder, Stephan Preibisch:
"Hook"-calibration of GeneChip-microarrays: Theory and algorithm.
- Alberto Apostolico, Olgert Denas:
Fast algorithms for computing sequence distances by exhaustive substring composition.
- Christian Rödelsperger, Christoph Dieterich:
Syntenator: Multiple gene order alignments with a gene-specific scoring function.
- Holger Wagner, Burkhard Morgenstern, Andreas W. M. Dress:
Stability of multiple alignments and phylogenetic trees: an analysis of ABC-transporter proteins family.
- Jishou Ruan, Hanzhe Chen, Lukasz A. Kurgan, Ke Chen, Chunsheng Kang, Peiyu Pu:
HuMiTar: A sequence-based method for prediction of human microRNA targets.
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