Algorithms for Molecular Biology, Volume 4

Volume 4, 2009

• Raazesh Sainudiin, Thomas York:
  Auto-validating von Neumann rejection sampling from small phylogenetic tree spaces.
  
• Zhen Wang, Guohui Ding, Zhong-Hao Yu, Lei Liu, Yixue Li:
  CHSMiner: a GUI tool to identify chromosomal homologous segments.
  
• Pierre Peterlongo, Gustavo Akio Tominaga Sacomoto, Alair Pereira do Lago, Nadia Pisanti, Marie-France Sagot:
  Lossless filter for multiple repeats with bounded edit distance.
  
• Tor Ivry, Shahar Michal, Assaf Avihoo, Guillermo Sapiro, Danny Barash:
  An image processing approach to computing distances between RNA secondary structures dot plots.
  
• Sahely Bhadra, Chiranjib Bhattacharyya, Nagasuma Chandra, I. Saira Mian:
  A linear programming approach for estimating the structure of a sparse linear genetic network from transcript profiling data.
  
• William B. Langdon, Andrew P. Harrison:
  Evolving DNA motifs to predict GeneChip probe performance.
  
• Koji Kadota, Yuji Nakai, Kentaro Shimizu:
  Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity.
  
• Sara C. Madeira, Arlindo L. Oliveira:
  A polynomial time biclustering algorithm for finding approximate expression patterns in gene expression time series.
  
• Dae-Won Kim, Hong-Seog Park:
  Review of "Bioinformatics: A Computing Perspective" edited by Shuba Gopal, Anne Haake, Rhys Price Jones and Paul Tymann.
  
• Axel Mosig, Stefan Jäger, Chaofeng Wang, Sumit Kumar Nath, Ilker Ersoy, Kannappan Palaniappan, Su-Shing Chen:
  Tracking cells in Life Cell Imaging videos using topological alignments.
  
• Sheron Wen, Chenguang Wang, Arthur Berg, Yao Li, Myron M. Chang, Roger B. Filligim, Margaret R. Wallace, Roland Staud, Lee Kaplan, Rongling Wu:
  Modeling genetic imprinting effects of DNA sequences with multilocus polymorphism data.