Briefings in Bioinformatics, Volume 4

Volume 4, Number 1, March 2003

• Timothy Clark: Editorial: Identity and Interoperability in Bioinformatics. 4-6

• Damian Counsell: A Review of Bioinformatics Education in the UK. 7-21
• Thomas Werner: The State of the Art of Mammalian Promoter Recognition. 22-30
• Francisco Azuaje: Clustering-based Approaches to Discovering and Visualising Microarray Data Patterns. 31-42
• Stephane Cruveiller, Kamel Jabbari, Oliver Clay, Giorgio Bernardi: Compositional Features of Eukaryotic Genomes for Checking Predicted Genes. 43-52
• Paul T. J. Tan, Asif M. Khan, Vladimir Brusic: Bioinformatics for Venom and Toxin Sciences. 53-62
• George Savva, Jo L. Dicks, Ian N. Roberts: Current Approaches to Whole Genome Phylogenetic Analysis. 63-74

• Lisa J. Mullan: Tutorial section: Biological Sequence Databases. 75-77
• I. King Jordan: Abstracts. 78-86
• Daniel S. Gonzalez: News Section. 91-103

Volume 4, Number 2, June 2003

• Martin Bishop: Editorial. 104

• Patrick Chain, Stefan Kurtz, Enno Ohlebusch, Tom Slezak: An Applications-focused Review of Comparative Genomics Tools: Capabilities, Limitations and Future Challenges. 105-123
• Matthew Berriman, Kim Rutherford: Viewing and Annotating Sequence Data with Artemis. 124
• Tom Slezak, Tom Kuczmarski, Linda M. Ott, Clinton Torres, Dan Medeiros, Jason Smith, Brian Truitt, Nisha Mulakken, Marisa Lam, Elizabeth A. Vitalis, Adam Zemla, Carol Ecale Zhou, Shea Gardner: Comparative Genomics Tools Applied to Bioterrorism Defence. 133-149
• Ana P. C. Rodrigues, Roderick E. Hubbard: Making Decisions for Structural Genomics. 150-167
• Pietro Liò: Dimensionality and Dependence Problems in Statistical Genomics. 168-178

• Renata C. Geer, Eric W. Sayers: Tutorial Section: Entrez: Making Use of Its Power. 179-184

• I. King Jordan: Abstracts. 185-191

• Don Gilbert: Software Review: Protein Family Alignment Annotation. 192

Volume 4, Number 3, September 2003

• Igor B. Rogozin, Vladimir N. Babenko, Luciano Milanesi, Youri I. Pavlov: Computational analysis of mutation spectra. 210-227
• SunYong Kim, Seiya Imoto, Satoru Miyano: Inferring gene networks from time series microarray data using dynamic Bayesian networks. 228
• M. G. Sriram: Modelling protein functional domains in signal transduction using Maude. 236-245
• Yves Deville, David Gilbert, Jacques van Helden, Shoshana J. Wodak: An overview of data models for the analysis of biochemical pathways. 246-259
• David Ficenec, Mark Osborne, Joël R. Pradines, Daniel R. Richards, Ramon M. Felciano, Raymond J. Cho, Richard O. Chen, Ted Liefeld, James Owen, Alan Ruttenberg, Christian Reich, Joseph Horvath, Tim Clark: Computational knowledge integration in biopharmaceutical research. 260-278
• Lisa J. Mullan: Tutorial section: Hydropathy - A window on the evasion of water. 279-282
• I. King Jordan: Abstracts. 283-300
• Don Gilbert: Software review: Shopping in the genome market with EnsMart. 292-301
• Daniel S. Gonzalez: News section. 302

Volume 4, Number 4, December 2003

• Martin Bishop: Editorial: Omics research and bioinformatics - joined-up thinking or anarchy? 313-314
• Jessica M. Lindvall, K. Emelie M. Blomberg, C. I. Edvard Smith: In silico tools for signal transduction research. 315-324
• Mauno Vihinen: Signal transduction-related bioinformatics services. 325-331
• Rodrigo Lopez, Karyn Duggan, Nicola Harte, Asif Kibria: Public services from the European Bioinformatics Institute. 332-340
• Rita Casadio, Piero Fariselli, Pier Luigi Martelli: In silico prediction of the structure of membrane proteins: Is it feasible? 341-348
• Vered Chalifa-Caspi, Orit Shmueli, Hila Benjamin-Rodrig, Naomi Rosen, Michael Shmoish, Itai Yanai, Ron Ophir, Pavel Kats, Marilyn Safran, Doron Lancet: GeneAnnot: Interfacing GeneCards with high-throughput gene expression compendia. 349-360
• Roslin Russell: Tutorial section: Designing microarray oligonucleotide probes. 361-367
• I. King Jordan: Abstracts. 368-374
• Andrew D. Arenson: Software review: Federating data with Information Integrator. 375
• Book reviews. 382